Wall clock time and date at job start Mon Mar 30 2020 01:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99752 * 2 1 4 4 H 1.48499 * 109.47141 * 274.95620 * 3 2 1 5 5 H 1.48501 * 109.47365 * 34.95532 * 3 2 1 6 6 H 1.48498 * 109.46841 * 154.95775 * 3 2 1 7 7 C 1.37876 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99468 * 186.88751 * 7 2 1 9 9 C 1.50696 * 120.00034 * 6.89604 * 7 2 1 10 10 H 1.09001 * 109.46755 * 303.83009 * 9 7 2 11 11 C 1.52996 * 109.47611 * 63.83790 * 9 7 2 12 12 Cl 1.80297 * 109.47011 * 55.04966 * 11 9 7 13 13 O 1.42907 * 109.47132 * 183.83748 * 9 7 2 14 14 C 1.42895 * 114.00261 * 145.15857 * 13 9 7 15 15 O 1.42896 * 109.47031 * 74.46237 * 14 13 9 16 16 C 1.42903 * 114.00109 * 75.00158 * 15 14 13 17 17 C 1.50697 * 109.47483 * 180.02562 * 16 15 14 18 18 C 1.38242 * 119.99557 * 269.72403 * 17 16 15 19 19 C 1.38236 * 119.99204 * 179.76503 * 18 17 16 20 20 C 1.38226 * 120.00344 * 0.50896 * 19 18 17 21 21 C 1.38234 * 120.00148 * 359.74575 * 20 19 18 22 22 C 1.38232 * 119.99998 * 0.02562 * 21 20 19 23 23 H 0.97003 * 120.00427 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47490 * 175.05415 * 11 9 7 25 25 H 1.09008 * 109.46630 * 295.04829 * 11 9 7 26 26 H 1.09000 * 109.47525 * 194.46926 * 14 13 9 27 27 H 1.09000 * 109.47228 * 314.46629 * 14 13 9 28 28 H 1.09000 * 109.46784 * 300.00111 * 16 15 14 29 29 H 1.09003 * 109.46715 * 59.99963 * 16 15 14 30 30 H 1.07998 * 120.00309 * 0.02562 * 18 17 16 31 31 H 1.08003 * 119.99268 * 180.23365 * 19 18 17 32 32 H 1.08003 * 120.00233 * 179.72184 * 20 19 18 33 33 H 1.08002 * 119.99725 * 179.97438 * 21 20 19 34 34 H 1.07995 * 119.99945 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3918 2.1069 -1.3948 5 1 1.5028 2.6202 0.8021 6 1 3.5951 1.4122 0.5926 7 6 2.0045 -1.1940 0.0005 8 1 3.0787 -1.1973 0.1127 9 6 1.2592 -2.4945 -0.1556 10 1 0.4970 -2.5717 0.6199 11 6 0.5927 -2.5384 -1.5321 12 17 1.8348 -2.2651 -2.8101 13 8 2.1742 -3.5855 -0.0344 14 6 1.6214 -4.7399 0.6008 15 8 0.7372 -5.4040 -0.3043 16 6 1.4029 -6.1357 -1.3355 17 6 0.3799 -6.7913 -2.2270 18 6 -0.0710 -8.0663 -1.9402 19 6 -1.0130 -8.6657 -2.7552 20 6 -1.4963 -7.9944 -3.8627 21 6 -1.0415 -6.7216 -4.1524 22 6 -0.1030 -6.1202 -3.3348 23 1 -0.4851 0.8400 -0.0004 24 1 0.1278 -3.5130 -1.6797 25 1 -0.1681 -1.7600 -1.5923 26 1 2.4257 -5.4179 0.8861 27 1 1.0697 -4.4361 1.4904 28 1 2.0160 -5.4550 -1.9261 29 1 2.0375 -6.9000 -0.8869 30 1 0.3095 -8.5923 -1.0772 31 1 -1.3681 -9.6603 -2.5291 32 1 -2.2289 -8.4645 -4.5020 33 1 -1.4188 -6.1973 -5.0180 34 1 0.2526 -5.1260 -3.5613 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205267235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:04 Heat of formation + Delta-G solvation = -89.249702 kcal Electronic energy + Delta-G solvation = -18509.778444 eV Core-core repulsion = 15433.217442 eV Total energy + Delta-G solvation = -3076.561002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.28606 -37.99651 -35.80694 -34.38828 -32.87562 -31.69841 -30.83143 -29.11549 -26.29506 -25.14147 -24.17075 -22.50517 -21.31610 -20.72803 -16.99584 -16.68642 -16.61595 -15.78983 -15.50257 -15.02091 -14.71825 -14.42664 -13.69438 -13.34597 -13.25049 -12.99867 -12.62647 -12.55554 -12.17083 -11.98054 -11.46095 -11.02340 -10.95956 -10.85245 -10.80340 -10.45217 -10.13669 -9.75164 -9.60881 -9.24338 -8.94262 -8.85071 -8.75764 -8.56237 -8.40977 -6.16357 -4.16295 1.35078 1.47258 3.30538 3.37262 3.40784 3.71284 3.75858 4.34407 4.36735 4.84756 4.91598 4.98926 5.08968 5.20170 5.22600 5.39880 5.55783 5.68581 5.83159 5.83858 5.92017 6.06100 6.14057 6.35962 6.49522 6.54014 6.56815 6.73921 6.88177 7.05529 7.13780 7.40943 7.80702 8.07441 8.36910 8.93137 9.49167 10.93666 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030768 B = 0.005048 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.804777 B = 5545.228971 C = 5944.369892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.066 3.934 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.502 4.502 8 H 0.068 0.932 9 C 0.211 3.789 10 H 0.040 0.960 11 C -0.022 4.022 12 Cl -0.215 7.215 13 O -0.390 6.390 14 C 0.212 3.788 15 O -0.398 6.398 16 C 0.102 3.898 17 C -0.082 4.082 18 C -0.103 4.103 19 C -0.128 4.128 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.095 4.095 23 H 0.265 0.735 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -14.082 -4.159 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.136 4.136 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.155 3.845 10 H 0.058 0.942 11 C -0.085 4.085 12 Cl -0.189 7.189 13 O -0.310 6.310 14 C 0.097 3.903 15 O -0.320 6.320 16 C 0.026 3.974 17 C -0.082 4.082 18 C -0.122 4.122 19 C -0.146 4.146 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.113 4.113 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.760 -13.900 -4.288 14.652 hybrid contribution 0.301 0.906 -0.021 0.955 sum -1.459 -12.994 -4.309 13.767 Atomic orbital electron populations 1.69891 1.05976 1.27266 1.50599 1.24823 0.94864 0.99251 0.94622 0.86398 0.79834 0.82609 0.78185 1.20407 1.21309 1.19684 1.20975 0.94554 0.88793 1.49626 0.91425 1.20062 0.88954 0.84440 0.91056 0.94206 1.25012 0.91571 1.01515 0.90410 1.98599 1.63603 1.97748 1.58944 1.88050 1.40325 1.23116 1.79519 1.23879 0.91429 0.85723 0.89242 1.88066 1.35684 1.66366 1.41835 1.21258 0.92550 0.94321 0.89272 1.19750 0.98467 0.94327 0.95633 1.21056 0.97078 0.94966 0.99059 1.21084 0.97919 0.99969 0.95652 1.21139 0.99986 0.95229 0.97558 1.21165 0.97677 0.95433 0.99873 1.21230 0.96100 0.99789 0.94180 0.92576 0.92037 0.87948 0.90822 0.89752 0.91314 0.93108 0.86167 0.86264 0.86337 0.86030 0.85478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 11.96 55.43 0.66 -24.14 16 2 C 0.07 1.77 5.26 -17.82 -0.09 1.68 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.50 -13.57 7.92 -34.44 -0.27 -13.84 16 8 H 0.07 1.89 7.82 -52.49 -0.41 1.48 16 9 C 0.21 5.18 2.28 -27.89 -0.06 5.12 16 10 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 11 C -0.02 -0.51 6.27 37.16 0.23 -0.27 16 12 Cl -0.21 -4.85 28.13 -51.86 -1.46 -6.31 16 13 O -0.39 -8.66 9.86 -59.04 -0.58 -9.24 16 14 C 0.21 3.76 7.00 101.05 0.71 4.46 16 15 O -0.40 -7.08 9.20 -59.04 -0.54 -7.62 16 16 C 0.10 1.58 5.94 36.00 0.21 1.80 16 17 C -0.08 -1.20 5.51 -104.62 -0.58 -1.77 16 18 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 19 C -0.13 -1.45 10.05 -39.59 -0.40 -1.84 16 20 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 21 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 22 C -0.09 -1.39 9.70 -39.59 -0.38 -1.77 16 23 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 24 H 0.06 1.34 6.91 -51.93 -0.36 0.98 16 25 H 0.10 2.59 6.79 -51.92 -0.35 2.24 16 26 H 0.07 1.09 8.01 -51.93 -0.42 0.67 16 27 H 0.08 1.45 7.72 -51.93 -0.40 1.05 16 28 H 0.07 1.17 7.98 -51.93 -0.41 0.75 16 29 H 0.05 0.67 8.06 -51.93 -0.42 0.25 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -28.91 309.10 -8.51 -37.41 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.41 Total: 0.69 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.81 Total: -11.84 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.66 Total: -24.14 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -1.13 Total: -16.86 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 17 Polarization: -4.85 SS G_CDS: -1.46 Total: -6.31 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.91 -8.51 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205267235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.837 kcal (2) G-P(sol) polarization free energy of solvation -28.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds