Wall clock time and date at job start Mon Mar 30 2020 01:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99752 * 2 1 4 4 H 1.48499 * 109.47141 * 274.95620 * 3 2 1 5 5 H 1.48501 * 109.47365 * 34.95532 * 3 2 1 6 6 H 1.48498 * 109.46841 * 154.95775 * 3 2 1 7 7 C 1.37876 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99468 * 186.88751 * 7 2 1 9 9 C 1.50696 * 120.00034 * 6.89604 * 7 2 1 10 10 H 1.09001 * 109.46755 * 303.83009 * 9 7 2 11 11 C 1.52996 * 109.47611 * 63.83790 * 9 7 2 12 12 Cl 1.80297 * 109.47011 * 55.04966 * 11 9 7 13 13 O 1.42907 * 109.47132 * 183.83748 * 9 7 2 14 14 C 1.42895 * 114.00261 * 145.15857 * 13 9 7 15 15 O 1.42896 * 109.47031 * 74.46237 * 14 13 9 16 16 C 1.42903 * 114.00109 * 75.00158 * 15 14 13 17 17 C 1.50697 * 109.47483 * 180.02562 * 16 15 14 18 18 C 1.38242 * 119.99557 * 269.72403 * 17 16 15 19 19 C 1.38236 * 119.99204 * 179.76503 * 18 17 16 20 20 C 1.38226 * 120.00344 * 0.50896 * 19 18 17 21 21 C 1.38234 * 120.00148 * 359.74575 * 20 19 18 22 22 C 1.38232 * 119.99998 * 0.02562 * 21 20 19 23 23 H 0.97003 * 120.00427 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47490 * 175.05415 * 11 9 7 25 25 H 1.09008 * 109.46630 * 295.04829 * 11 9 7 26 26 H 1.09000 * 109.47525 * 194.46926 * 14 13 9 27 27 H 1.09000 * 109.47228 * 314.46629 * 14 13 9 28 28 H 1.09000 * 109.46784 * 300.00111 * 16 15 14 29 29 H 1.09003 * 109.46715 * 59.99963 * 16 15 14 30 30 H 1.07998 * 120.00309 * 0.02562 * 18 17 16 31 31 H 1.08003 * 119.99268 * 180.23365 * 19 18 17 32 32 H 1.08003 * 120.00233 * 179.72184 * 20 19 18 33 33 H 1.08002 * 119.99725 * 179.97438 * 21 20 19 34 34 H 1.07995 * 119.99945 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3918 2.1069 -1.3948 5 1 1.5028 2.6202 0.8021 6 1 3.5951 1.4122 0.5926 7 6 2.0045 -1.1940 0.0005 8 1 3.0787 -1.1973 0.1127 9 6 1.2592 -2.4945 -0.1556 10 1 0.4970 -2.5717 0.6199 11 6 0.5927 -2.5384 -1.5321 12 17 1.8348 -2.2651 -2.8101 13 8 2.1742 -3.5855 -0.0344 14 6 1.6214 -4.7399 0.6008 15 8 0.7372 -5.4040 -0.3043 16 6 1.4029 -6.1357 -1.3355 17 6 0.3799 -6.7913 -2.2270 18 6 -0.0710 -8.0663 -1.9402 19 6 -1.0130 -8.6657 -2.7552 20 6 -1.4963 -7.9944 -3.8627 21 6 -1.0415 -6.7216 -4.1524 22 6 -0.1030 -6.1202 -3.3348 23 1 -0.4851 0.8400 -0.0004 24 1 0.1278 -3.5130 -1.6797 25 1 -0.1681 -1.7600 -1.5923 26 1 2.4257 -5.4179 0.8861 27 1 1.0697 -4.4361 1.4904 28 1 2.0160 -5.4550 -1.9261 29 1 2.0375 -6.9000 -0.8869 30 1 0.3095 -8.5923 -1.0772 31 1 -1.3681 -9.6603 -2.5291 32 1 -2.2289 -8.4645 -4.5020 33 1 -1.4188 -6.1973 -5.0180 34 1 0.2526 -5.1260 -3.5613 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205267235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:03 Heat of formation + Delta-G solvation = -104.316384 kcal Electronic energy + Delta-G solvation = -18510.431784 eV Core-core repulsion = 15433.217442 eV Total energy + Delta-G solvation = -3077.214343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.36716 -39.42823 -37.39880 -36.21410 -34.86301 -32.78297 -31.77844 -31.02664 -27.50223 -27.16243 -25.59322 -23.46774 -22.82303 -22.12632 -18.70994 -18.23118 -17.86880 -17.23679 -16.91369 -16.47852 -16.03355 -15.80795 -15.34033 -14.81604 -14.59088 -14.33762 -14.05334 -13.81441 -13.73291 -13.35434 -13.26511 -12.83092 -12.75185 -12.24740 -12.03617 -11.94162 -11.67684 -11.46612 -11.31499 -11.03104 -10.71186 -10.58006 -10.34407 -9.80917 -9.72568 -8.22944 -6.29213 0.36879 0.51269 1.41249 1.44746 1.53277 1.85980 2.39710 2.65780 3.10416 3.17705 3.27714 3.93632 3.96731 4.16864 4.27975 4.33132 4.44241 4.47657 4.51558 4.53827 4.61929 4.69218 4.80496 4.94547 5.10138 5.16831 5.18299 5.56512 5.61809 5.67066 5.72276 5.98528 6.11778 6.17002 6.53196 6.87636 7.40067 8.86401 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030768 B = 0.005048 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.804777 B = 5545.228971 C = 5944.369892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.029 3.971 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.219 3.781 10 H 0.019 0.981 11 C -0.008 4.008 12 Cl -0.207 7.207 13 O -0.404 6.404 14 C 0.207 3.793 15 O -0.410 6.410 16 C 0.103 3.897 17 C -0.104 4.104 18 C -0.109 4.109 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.132 4.132 22 C -0.120 4.120 23 H 0.267 0.733 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.136 0.864 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 -15.565 -4.384 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.171 4.171 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.162 3.838 10 H 0.037 0.963 11 C -0.072 4.072 12 Cl -0.181 7.181 13 O -0.325 6.325 14 C 0.093 3.907 15 O -0.332 6.332 16 C 0.027 3.973 17 C -0.104 4.104 18 C -0.127 4.127 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.150 4.150 22 C -0.139 4.139 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.127 0.873 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.156 0.844 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.154 0.846 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.985 -15.399 -4.512 16.169 hybrid contribution 0.355 1.248 0.023 1.297 sum -1.631 -14.151 -4.489 14.936 Atomic orbital electron populations 1.69971 1.06949 1.28011 1.50928 1.25459 0.95549 1.01853 0.94223 0.85594 0.78961 0.79396 0.78123 1.20398 1.20403 1.19314 1.21140 0.94008 0.90302 1.50082 0.92810 1.19762 0.88453 0.84714 0.90847 0.96320 1.24743 0.91064 1.01191 0.90189 1.98593 1.63324 1.97757 1.58476 1.88003 1.40379 1.23832 1.80280 1.24161 0.92743 0.84884 0.88941 1.88044 1.36286 1.66531 1.42349 1.21340 0.92980 0.94217 0.88764 1.19796 0.99301 0.95481 0.95824 1.21313 0.97297 0.94208 0.99922 1.21500 0.96816 1.01149 0.94907 1.21540 0.99853 0.94484 0.97769 1.21406 0.97181 0.96337 1.00054 1.21234 0.97687 0.99465 0.95470 0.92378 0.90946 0.90103 0.87319 0.89503 0.93562 0.90616 0.84416 0.83102 0.83283 0.84610 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.14 11.96 21.45 0.26 -50.89 16 2 C 0.03 1.55 5.26 84.65 0.44 1.99 16 3 Si 0.95 43.69 29.54 68.60 2.03 45.71 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.52 -28.31 7.92 25.60 0.20 -28.10 16 8 H 0.05 3.04 7.82 -2.91 -0.02 3.01 16 9 C 0.22 10.95 2.28 29.85 0.07 11.02 16 10 H 0.02 1.03 7.50 -2.39 -0.02 1.01 16 11 C -0.01 -0.40 6.27 71.98 0.45 0.05 16 12 Cl -0.21 -9.45 28.13 -2.72 -0.08 -9.53 16 13 O -0.40 -18.06 9.86 -126.21 -1.24 -19.30 16 14 C 0.21 7.21 7.00 113.37 0.79 8.00 16 15 O -0.41 -14.48 9.20 -126.21 -1.16 -15.64 16 16 C 0.10 3.14 5.94 71.24 0.42 3.56 16 17 C -0.10 -2.98 5.51 -19.87 -0.11 -3.09 16 18 C -0.11 -2.54 9.70 22.27 0.22 -2.33 16 19 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 20 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 21 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 22 C -0.12 -3.55 9.70 22.27 0.22 -3.33 16 23 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 24 H 0.07 3.24 6.91 -2.39 -0.02 3.22 16 25 H 0.08 4.19 6.79 -2.38 -0.02 4.18 16 26 H 0.11 3.00 8.01 -2.39 -0.02 2.98 16 27 H 0.09 2.96 7.72 -2.39 -0.02 2.94 16 28 H 0.05 1.60 7.98 -2.39 -0.02 1.58 16 29 H 0.08 1.88 8.06 -2.39 -0.02 1.86 16 30 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 31 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 34 H 0.11 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -61.57 309.10 4.26 -57.31 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.08 Total: 11.84 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 3.38 Total: -19.51 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.26 Total: -50.89 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -2.41 Total: -34.94 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -9.45 SS G_CDS: -0.08 Total: -9.53 kcal Total: -61.57 4.26 -57.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205267235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.009 kcal (2) G-P(sol) polarization free energy of solvation -61.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds