Wall clock time and date at job start Mon Mar 30 2020 01:09:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86794 * 120.00065 * 2 1
4 4 H 1.48496 * 109.47447 * 269.99988 * 3 2 1
5 5 H 1.48502 * 109.47211 * 30.00257 * 3 2 1
6 6 H 1.48499 * 109.47133 * 149.99735 * 3 2 1
7 7 C 1.37876 * 119.99730 * 179.97438 * 2 1 3
8 8 H 1.08007 * 119.99980 * 179.97438 * 7 2 1
9 9 C 1.50700 * 120.00629 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47520 * 179.97438 * 9 7 2
11 11 O 1.42903 * 109.46931 * 179.97438 * 10 9 7
12 12 C 1.42901 * 113.99903 * 180.02562 * 11 10 9
13 13 C 1.52997 * 109.47189 * 180.02562 * 12 11 10
14 14 H 1.08995 * 109.51015 * 305.10158 * 13 12 11
15 15 C 1.53197 * 109.51149 * 184.99709 * 13 12 11
16 16 O 1.43375 * 109.22064 * 177.49309 * 15 13 12
17 17 C 1.38186 * 114.42885 * 46.69924 * 16 15 13
18 18 C 1.33727 * 124.31844 * 163.26776 * 17 16 15
19 19 S 1.75634 * 110.17942 * 180.14438 * 18 17 16
20 20 C 1.75640 * 91.08224 * 359.95900 * 19 18 17
21 21 C 1.33723 * 110.17958 * 359.96782 * 20 19 18
22 22 O 1.38183 * 124.31897 * 180.14056 * 21 20 19
23 23 H 0.96993 * 120.00149 * 359.97438 * 1 2 3
24 24 H 1.08999 * 109.46980 * 59.99206 * 9 7 2
25 25 H 1.08999 * 109.47014 * 300.00217 * 9 7 2
26 26 H 1.09000 * 109.46923 * 60.00035 * 10 9 7
27 27 H 1.09003 * 109.47014 * 299.99995 * 10 9 7
28 28 H 1.08996 * 109.46961 * 60.00009 * 12 11 10
29 29 H 1.09008 * 109.46616 * 300.00252 * 12 11 10
30 30 H 1.09004 * 109.51021 * 57.57708 * 15 13 12
31 31 H 1.08993 * 109.51774 * 297.42067 * 15 13 12
32 32 H 1.07999 * 124.90486 * 0.16179 * 18 17 16
33 33 H 1.08005 * 124.91546 * 179.97438 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4466 2.6526 0.7001
6 1 3.5466 1.4401 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 6 2.2453 -3.6621 0.0005
11 8 1.5307 -4.8997 0.0011
12 6 2.3706 -6.0558 0.0018
13 6 1.5034 -7.3162 0.0017
14 1 0.8100 -7.2810 0.8420
15 6 2.3984 -8.5531 0.1282
16 8 1.5765 -9.7265 0.1865
17 6 0.5762 -9.7715 -0.7658
18 6 -0.0902 -10.8794 -1.1074
19 16 -1.2733 -10.5149 -2.3532
20 6 -0.7988 -8.8238 -2.3558
21 6 0.1773 -8.6172 -1.4655
22 8 0.7664 -7.3904 -1.2259
23 1 -0.4850 0.8400 0.0004
24 1 0.6246 -2.5571 -0.8896
25 1 0.6240 -2.5568 0.8903
26 1 2.8719 -3.6044 0.8905
27 1 2.8719 -3.6044 -0.8895
28 1 2.9998 -6.0472 0.8918
29 1 3.0000 -6.0481 -0.8883
30 1 2.9938 -8.4801 1.0383
31 1 3.0594 -8.6142 -0.7363
32 1 0.0750 -11.8569 -0.6788
33 1 -1.2328 -8.0609 -2.9853
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001205648897.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:09:03
Heat of formation + Delta-G solvation = -88.668398 kcal
Electronic energy + Delta-G solvation = -17859.283590 eV
Core-core repulsion = 14784.791502 eV
Total energy + Delta-G solvation = -3074.492089 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.076 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-41.08266 -37.71105 -36.94086 -35.86566 -33.27354 -31.41203 -29.69152 -29.37169
-25.85903 -24.30111 -23.84814 -22.39151 -20.87631 -19.44005 -19.07274 -17.14994
-16.75887 -16.49805 -15.94554 -15.56382 -15.21419 -14.83371 -14.65261 -14.53966
-14.35271 -13.61703 -13.33617 -12.90255 -12.58709 -12.23924 -12.05896 -11.48490
-11.22186 -11.13375 -11.00349 -10.84056 -10.68812 -10.50737 -10.34398 -9.53071
-9.22553 -9.02433 -8.69107 -8.38001 -8.09391 -6.04599 -4.08720 0.76606
1.32134 1.53428 2.32392 3.16581 3.29836 3.35558 3.37844 3.38771
3.72008 4.15531 4.41705 4.54348 4.67718 4.94493 5.10989 5.19754
5.24220 5.31368 5.36140 5.39710 5.53321 5.67244 5.98369 6.17827
6.21540 6.55361 6.83015 7.02032 7.47021 7.76156 7.76869 8.05743
8.32878 8.97769 9.55058 11.07049
Molecular weight = 270.08amu
Principal moments of inertia in cm(-1)
A = 0.038129 B = 0.003188 C = 0.002989
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 734.165172 B = 8779.730817 C = 9366.542580
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.059 3.941
3 Si 0.897 3.103
4 H -0.279 1.279
5 H -0.285 1.285
6 H -0.273 1.273
7 C -0.525 4.525
8 H 0.056 0.944
9 C 0.025 3.975
10 C 0.068 3.932
11 O -0.383 6.383
12 C 0.071 3.929
13 C 0.053 3.947
14 H 0.092 0.908
15 C 0.028 3.972
16 O -0.291 6.291
17 C 0.048 3.952
18 C -0.241 4.241
19 S 0.161 5.839
20 C -0.236 4.236
21 C 0.051 3.949
22 O -0.274 6.274
23 H 0.262 0.738
24 H 0.025 0.975
25 H 0.025 0.975
26 H 0.037 0.963
27 H 0.037 0.963
28 H 0.069 0.931
29 H 0.057 0.943
30 H 0.126 0.874
31 H 0.079 0.921
32 H 0.174 0.826
33 H 0.177 0.823
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.921 -22.575 -2.240 22.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.143 4.143
3 Si 0.725 3.275
4 H -0.206 1.206
5 H -0.211 1.211
6 H -0.198 1.198
7 C -0.563 4.563
8 H 0.075 0.925
9 C -0.012 4.012
10 C -0.007 4.007
11 O -0.302 6.302
12 C -0.007 4.007
13 C -0.004 4.004
14 H 0.110 0.890
15 C -0.048 4.048
16 O -0.207 6.207
17 C -0.009 4.009
18 C -0.377 4.377
19 S 0.421 5.579
20 C -0.372 4.372
21 C -0.005 4.005
22 O -0.189 6.189
23 H 0.072 0.928
24 H 0.044 0.956
25 H 0.043 0.957
26 H 0.055 0.945
27 H 0.056 0.944
28 H 0.087 0.913
29 H 0.075 0.925
30 H 0.144 0.856
31 H 0.097 0.903
32 H 0.191 0.809
33 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges 0.557 -23.256 -2.993 23.454
hybrid contribution 1.885 1.912 0.873 2.824
sum 2.442 -21.343 -2.121 21.587
Atomic orbital electron populations
1.69982 1.06085 1.26812 1.49995 1.25001 0.94889 0.99328 0.95088
0.86513 0.79723 0.83108 0.78164 1.20555 1.21102 1.19830 1.21039
0.92985 0.90518 1.51796 0.92532 1.19070 0.94239 0.89325 0.98573
1.22943 0.96512 0.82879 0.98360 1.88002 1.33355 1.13548 1.95298
1.22227 0.92136 0.85147 1.01161 1.23156 0.94586 0.95231 0.87446
0.88975 1.23529 0.92384 0.83559 1.05366 1.87026 1.42052 1.41538
1.50043 1.18590 0.94381 0.92782 0.95120 1.24547 1.05223 1.01447
1.06439 1.84061 1.37396 1.00258 1.36224 1.24625 1.03135 1.01291
1.08124 1.18648 0.96877 0.85625 0.99332 1.87227 1.65479 1.26869
1.39349 0.92807 0.95632 0.95703 0.94495 0.94434 0.91331 0.92494
0.85640 0.90310 0.80866 0.80521
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16
2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16
4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
7 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16
8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16
9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16
10 C 0.07 1.49 5.88 37.16 0.22 1.71 16
11 O -0.38 -7.79 10.31 -39.47 -0.41 -8.20 16
12 C 0.07 1.03 5.61 37.16 0.21 1.24 16
13 C 0.05 0.73 3.20 -26.63 -0.09 0.65 16
14 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16
15 C 0.03 0.29 6.41 37.26 0.24 0.53 16
16 O -0.29 -3.64 10.77 -34.66 -0.37 -4.01 16
17 C 0.05 0.62 6.56 -40.21 -0.26 0.35 16
18 C -0.24 -2.52 11.19 29.15 0.33 -2.20 16
19 S 0.16 1.50 23.31 -107.50 -2.51 -1.01 16
20 C -0.24 -2.87 11.19 29.15 0.33 -2.55 16
21 C 0.05 0.73 6.56 -40.22 -0.26 0.47 16
22 O -0.27 -4.45 10.38 -43.16 -0.45 -4.90 16
23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16
25 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16
26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16
27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
29 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16
30 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16
31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
32 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16
33 H 0.18 1.96 8.06 -52.48 -0.42 1.54 16
LS Contribution 300.86 15.07 4.53 4.53
Total: -1.00 -32.81 300.86 -7.53 -40.35
By element:
Atomic # 1 Polarization: 0.16 SS G_CDS: -4.19 Total: -4.03 kcal
Atomic # 6 Polarization: -13.11 SS G_CDS: 0.15 Total: -12.96 kcal
Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.32 kcal
Atomic # 8 Polarization: -15.89 SS G_CDS: -1.23 Total: -17.11 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal
Atomic # 16 Polarization: 1.50 SS G_CDS: -2.51 Total: -1.01 kcal
Total LS contribution 4.53 Total: 4.53 kcal
Total: -32.81 -7.53 -40.35 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001205648897.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.322 kcal
(2) G-P(sol) polarization free energy of solvation -32.814 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.136 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds