Wall clock time and date at job start Mon Mar 30 2020 01:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48496 * 109.47447 * 269.99988 * 3 2 1 5 5 H 1.48502 * 109.47211 * 30.00257 * 3 2 1 6 6 H 1.48499 * 109.47133 * 149.99735 * 3 2 1 7 7 C 1.37876 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99980 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00629 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47520 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46931 * 179.97438 * 10 9 7 12 12 C 1.42901 * 113.99903 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47189 * 180.02562 * 12 11 10 14 14 H 1.08995 * 109.51015 * 305.10158 * 13 12 11 15 15 C 1.53197 * 109.51149 * 184.99709 * 13 12 11 16 16 O 1.43375 * 109.22064 * 177.49309 * 15 13 12 17 17 C 1.38186 * 114.42885 * 46.69924 * 16 15 13 18 18 C 1.33727 * 124.31844 * 163.26776 * 17 16 15 19 19 S 1.75634 * 110.17942 * 180.14438 * 18 17 16 20 20 C 1.75640 * 91.08224 * 359.95900 * 19 18 17 21 21 C 1.33723 * 110.17958 * 359.96782 * 20 19 18 22 22 O 1.38183 * 124.31897 * 180.14056 * 21 20 19 23 23 H 0.96993 * 120.00149 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46980 * 59.99206 * 9 7 2 25 25 H 1.08999 * 109.47014 * 300.00217 * 9 7 2 26 26 H 1.09000 * 109.46923 * 60.00035 * 10 9 7 27 27 H 1.09003 * 109.47014 * 299.99995 * 10 9 7 28 28 H 1.08996 * 109.46961 * 60.00009 * 12 11 10 29 29 H 1.09008 * 109.46616 * 300.00252 * 12 11 10 30 30 H 1.09004 * 109.51021 * 57.57708 * 15 13 12 31 31 H 1.08993 * 109.51774 * 297.42067 * 15 13 12 32 32 H 1.07999 * 124.90486 * 0.16179 * 18 17 16 33 33 H 1.08005 * 124.91546 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5307 -4.8997 0.0011 12 6 2.3706 -6.0558 0.0018 13 6 1.5034 -7.3162 0.0017 14 1 0.8100 -7.2810 0.8420 15 6 2.3984 -8.5531 0.1282 16 8 1.5765 -9.7265 0.1865 17 6 0.5762 -9.7715 -0.7658 18 6 -0.0902 -10.8794 -1.1074 19 16 -1.2733 -10.5149 -2.3532 20 6 -0.7988 -8.8238 -2.3558 21 6 0.1773 -8.6172 -1.4655 22 8 0.7664 -7.3904 -1.2259 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.8719 -3.6044 0.8905 27 1 2.8719 -3.6044 -0.8895 28 1 2.9998 -6.0472 0.8918 29 1 3.0000 -6.0481 -0.8883 30 1 2.9938 -8.4801 1.0383 31 1 3.0594 -8.6142 -0.7363 32 1 0.0750 -11.8569 -0.6788 33 1 -1.2328 -8.0609 -2.9853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205648897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:03 Heat of formation + Delta-G solvation = -88.668398 kcal Electronic energy + Delta-G solvation = -17859.283590 eV Core-core repulsion = 14784.791502 eV Total energy + Delta-G solvation = -3074.492089 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.08266 -37.71105 -36.94086 -35.86566 -33.27354 -31.41203 -29.69152 -29.37169 -25.85903 -24.30111 -23.84814 -22.39151 -20.87631 -19.44005 -19.07274 -17.14994 -16.75887 -16.49805 -15.94554 -15.56382 -15.21419 -14.83371 -14.65261 -14.53966 -14.35271 -13.61703 -13.33617 -12.90255 -12.58709 -12.23924 -12.05896 -11.48490 -11.22186 -11.13375 -11.00349 -10.84056 -10.68812 -10.50737 -10.34398 -9.53071 -9.22553 -9.02433 -8.69107 -8.38001 -8.09391 -6.04599 -4.08720 0.76606 1.32134 1.53428 2.32392 3.16581 3.29836 3.35558 3.37844 3.38771 3.72008 4.15531 4.41705 4.54348 4.67718 4.94493 5.10989 5.19754 5.24220 5.31368 5.36140 5.39710 5.53321 5.67244 5.98369 6.17827 6.21540 6.55361 6.83015 7.02032 7.47021 7.76156 7.76869 8.05743 8.32878 8.97769 9.55058 11.07049 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038129 B = 0.003188 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.165172 B = 8779.730817 C = 9366.542580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.068 3.932 11 O -0.383 6.383 12 C 0.071 3.929 13 C 0.053 3.947 14 H 0.092 0.908 15 C 0.028 3.972 16 O -0.291 6.291 17 C 0.048 3.952 18 C -0.241 4.241 19 S 0.161 5.839 20 C -0.236 4.236 21 C 0.051 3.949 22 O -0.274 6.274 23 H 0.262 0.738 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.174 0.826 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 -22.575 -2.240 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.007 4.007 11 O -0.302 6.302 12 C -0.007 4.007 13 C -0.004 4.004 14 H 0.110 0.890 15 C -0.048 4.048 16 O -0.207 6.207 17 C -0.009 4.009 18 C -0.377 4.377 19 S 0.421 5.579 20 C -0.372 4.372 21 C -0.005 4.005 22 O -0.189 6.189 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.144 0.856 31 H 0.097 0.903 32 H 0.191 0.809 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.557 -23.256 -2.993 23.454 hybrid contribution 1.885 1.912 0.873 2.824 sum 2.442 -21.343 -2.121 21.587 Atomic orbital electron populations 1.69982 1.06085 1.26812 1.49995 1.25001 0.94889 0.99328 0.95088 0.86513 0.79723 0.83108 0.78164 1.20555 1.21102 1.19830 1.21039 0.92985 0.90518 1.51796 0.92532 1.19070 0.94239 0.89325 0.98573 1.22943 0.96512 0.82879 0.98360 1.88002 1.33355 1.13548 1.95298 1.22227 0.92136 0.85147 1.01161 1.23156 0.94586 0.95231 0.87446 0.88975 1.23529 0.92384 0.83559 1.05366 1.87026 1.42052 1.41538 1.50043 1.18590 0.94381 0.92782 0.95120 1.24547 1.05223 1.01447 1.06439 1.84061 1.37396 1.00258 1.36224 1.24625 1.03135 1.01291 1.08124 1.18648 0.96877 0.85625 0.99332 1.87227 1.65479 1.26869 1.39349 0.92807 0.95632 0.95703 0.94495 0.94434 0.91331 0.92494 0.85640 0.90310 0.80866 0.80521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 10 C 0.07 1.49 5.88 37.16 0.22 1.71 16 11 O -0.38 -7.79 10.31 -39.47 -0.41 -8.20 16 12 C 0.07 1.03 5.61 37.16 0.21 1.24 16 13 C 0.05 0.73 3.20 -26.63 -0.09 0.65 16 14 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 15 C 0.03 0.29 6.41 37.26 0.24 0.53 16 16 O -0.29 -3.64 10.77 -34.66 -0.37 -4.01 16 17 C 0.05 0.62 6.56 -40.21 -0.26 0.35 16 18 C -0.24 -2.52 11.19 29.15 0.33 -2.20 16 19 S 0.16 1.50 23.31 -107.50 -2.51 -1.01 16 20 C -0.24 -2.87 11.19 29.15 0.33 -2.55 16 21 C 0.05 0.73 6.56 -40.22 -0.26 0.47 16 22 O -0.27 -4.45 10.38 -43.16 -0.45 -4.90 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.18 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -32.81 300.86 -7.53 -40.35 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -4.19 Total: -4.03 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 0.15 Total: -12.96 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -1.23 Total: -17.11 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.51 Total: -1.01 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.81 -7.53 -40.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.322 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds