Wall clock time and date at job start Mon Mar 30 2020 01:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48496 * 109.47447 * 269.99988 * 3 2 1 5 5 H 1.48502 * 109.47211 * 30.00257 * 3 2 1 6 6 H 1.48499 * 109.47133 * 149.99735 * 3 2 1 7 7 C 1.37876 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99980 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00629 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47520 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46931 * 179.97438 * 10 9 7 12 12 C 1.42901 * 113.99903 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47189 * 180.02562 * 12 11 10 14 14 H 1.08995 * 109.51015 * 305.10158 * 13 12 11 15 15 C 1.53197 * 109.51149 * 184.99709 * 13 12 11 16 16 O 1.43375 * 109.22064 * 177.49309 * 15 13 12 17 17 C 1.38186 * 114.42885 * 46.69924 * 16 15 13 18 18 C 1.33727 * 124.31844 * 163.26776 * 17 16 15 19 19 S 1.75634 * 110.17942 * 180.14438 * 18 17 16 20 20 C 1.75640 * 91.08224 * 359.95900 * 19 18 17 21 21 C 1.33723 * 110.17958 * 359.96782 * 20 19 18 22 22 O 1.38183 * 124.31897 * 180.14056 * 21 20 19 23 23 H 0.96993 * 120.00149 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46980 * 59.99206 * 9 7 2 25 25 H 1.08999 * 109.47014 * 300.00217 * 9 7 2 26 26 H 1.09000 * 109.46923 * 60.00035 * 10 9 7 27 27 H 1.09003 * 109.47014 * 299.99995 * 10 9 7 28 28 H 1.08996 * 109.46961 * 60.00009 * 12 11 10 29 29 H 1.09008 * 109.46616 * 300.00252 * 12 11 10 30 30 H 1.09004 * 109.51021 * 57.57708 * 15 13 12 31 31 H 1.08993 * 109.51774 * 297.42067 * 15 13 12 32 32 H 1.07999 * 124.90486 * 0.16179 * 18 17 16 33 33 H 1.08005 * 124.91546 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5307 -4.8997 0.0011 12 6 2.3706 -6.0558 0.0018 13 6 1.5034 -7.3162 0.0017 14 1 0.8100 -7.2810 0.8420 15 6 2.3984 -8.5531 0.1282 16 8 1.5765 -9.7265 0.1865 17 6 0.5762 -9.7715 -0.7658 18 6 -0.0902 -10.8794 -1.1074 19 16 -1.2733 -10.5149 -2.3532 20 6 -0.7988 -8.8238 -2.3558 21 6 0.1773 -8.6172 -1.4655 22 8 0.7664 -7.3904 -1.2259 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.8719 -3.6044 0.8905 27 1 2.8719 -3.6044 -0.8895 28 1 2.9998 -6.0472 0.8918 29 1 3.0000 -6.0481 -0.8883 30 1 2.9938 -8.4801 1.0383 31 1 3.0594 -8.6142 -0.7363 32 1 0.0750 -11.8569 -0.6788 33 1 -1.2328 -8.0609 -2.9853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205648897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:03 Heat of formation + Delta-G solvation = -111.131353 kcal Electronic energy + Delta-G solvation = -17860.257657 eV Core-core repulsion = 14784.791502 eV Total energy + Delta-G solvation = -3075.466155 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.02013 -39.10033 -37.98178 -36.88071 -35.37018 -32.78458 -31.42429 -30.29690 -27.23116 -26.02461 -24.74728 -23.48798 -22.81382 -20.38982 -20.03564 -18.72923 -18.03519 -17.50270 -17.30260 -16.80588 -16.60161 -16.46545 -15.84699 -15.75154 -15.42519 -14.96193 -14.32491 -14.26748 -14.01993 -13.80386 -13.45208 -12.90071 -12.73115 -12.44411 -12.36387 -12.18915 -12.04665 -11.87680 -11.80662 -11.44083 -11.37444 -10.69950 -10.47596 -9.59023 -8.93531 -8.24649 -6.38467 -0.12325 0.50266 0.67443 1.37750 1.40820 1.43500 1.54610 2.24246 2.34629 2.46028 2.63500 3.09269 3.20782 3.58506 3.74476 3.82109 4.19105 4.29437 4.31391 4.42738 4.43489 4.46292 4.50367 4.63909 4.65060 4.90648 5.08258 5.34421 5.54868 5.64262 5.71279 6.04849 6.08822 6.35207 6.77882 7.31702 8.88655 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038129 B = 0.003188 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.165172 B = 8779.730817 C = 9366.542580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.977 3.023 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.026 3.974 10 C 0.085 3.915 11 O -0.414 6.414 12 C 0.065 3.935 13 C 0.050 3.950 14 H 0.078 0.922 15 C 0.035 3.965 16 O -0.300 6.300 17 C 0.021 3.979 18 C -0.236 4.236 19 S 0.229 5.771 20 C -0.256 4.256 21 C 0.021 3.979 22 O -0.310 6.310 23 H 0.266 0.734 24 H -0.011 1.011 25 H -0.007 1.007 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.160 0.840 31 H 0.088 0.912 32 H 0.199 0.801 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 -23.675 -2.121 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.800 3.200 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.011 4.011 10 C 0.010 3.990 11 O -0.334 6.334 12 C -0.011 4.011 13 C -0.007 4.007 14 H 0.096 0.904 15 C -0.041 4.041 16 O -0.215 6.215 17 C -0.036 4.036 18 C -0.371 4.371 19 S 0.490 5.510 20 C -0.392 4.392 21 C -0.035 4.035 22 O -0.226 6.226 23 H 0.074 0.926 24 H 0.007 0.993 25 H 0.012 0.988 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.178 0.822 31 H 0.106 0.894 32 H 0.216 0.784 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.212 -24.393 -2.881 24.662 hybrid contribution 1.250 2.116 0.780 2.579 sum 3.461 -22.276 -2.101 22.641 Atomic orbital electron populations 1.70138 1.08164 1.28117 1.50917 1.26095 0.95823 1.03844 0.94273 0.85270 0.78609 0.77466 0.78615 1.19638 1.20722 1.18113 1.21480 0.93841 0.91273 1.51715 0.91069 1.18948 0.94733 0.92171 0.95297 1.22522 0.94724 0.82078 0.99706 1.87936 1.35297 1.14548 1.95616 1.22570 0.92110 0.83128 1.03304 1.23231 0.94765 0.96365 0.86326 0.90431 1.23659 0.91538 0.81397 1.07520 1.86993 1.42273 1.42052 1.50217 1.18728 0.95677 0.92973 0.96186 1.25027 1.04290 1.01926 1.05882 1.83809 1.35570 0.97068 1.34549 1.24992 1.02890 1.03638 1.07697 1.18999 0.98129 0.85542 1.00848 1.87147 1.66436 1.28583 1.40419 0.92555 0.99295 0.98819 0.92526 0.93427 0.87812 0.91450 0.82242 0.89386 0.78368 0.80479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.23 13.29 21.45 0.28 -57.94 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.98 44.08 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.55 -31.42 9.11 25.60 0.23 -31.18 16 8 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.03 1.45 5.34 29.85 0.16 1.61 16 10 C 0.09 3.72 5.88 71.98 0.42 4.14 16 11 O -0.41 -17.13 10.31 -144.92 -1.49 -18.62 16 12 C 0.07 1.85 5.61 71.98 0.40 2.25 16 13 C 0.05 1.38 3.20 30.66 0.10 1.48 16 14 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 15 C 0.03 0.68 6.41 72.05 0.46 1.14 16 16 O -0.30 -7.13 10.77 -112.81 -1.21 -8.34 16 17 C 0.02 0.52 6.56 21.86 0.14 0.66 16 18 C -0.24 -4.47 11.19 66.79 0.75 -3.72 16 19 S 0.23 3.84 23.31 -56.49 -1.32 2.52 16 20 C -0.26 -6.26 11.19 66.79 0.75 -5.51 16 21 C 0.02 0.61 6.56 21.86 0.14 0.75 16 22 O -0.31 -10.43 10.38 -104.63 -1.09 -11.51 16 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 24 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.16 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.20 2.63 8.06 -2.91 -0.02 2.60 16 33 H 0.18 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -73.47 300.86 2.33 -71.14 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 1.11 Total: 4.71 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 4.02 Total: -28.06 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.28 Total: -57.94 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -3.80 Total: -38.48 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.32 Total: 2.52 kcal Total: -73.47 2.33 -71.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.989 kcal (2) G-P(sol) polarization free energy of solvation -73.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds