Wall clock time and date at job start Mon Mar 30 2020 01:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47036 * 179.97438 * 10 9 7 12 12 C 1.42901 * 113.99948 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47084 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.51003 * 55.00488 * 13 12 11 15 15 C 1.53202 * 109.51254 * 175.10254 * 13 12 11 16 16 O 1.43359 * 109.22563 * 182.46079 * 15 13 12 17 17 C 1.38180 * 114.47107 * 313.41689 * 16 15 13 18 18 C 1.33727 * 124.31190 * 196.74267 * 17 16 15 19 19 S 1.75647 * 110.17632 * 179.70975 * 18 17 16 20 20 C 1.75642 * 91.07885 * 0.04116 * 19 18 17 21 21 C 1.33718 * 110.18208 * 0.03025 * 20 19 18 22 22 O 1.38184 * 124.31704 * 179.84105 * 21 20 19 23 23 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 25 25 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 26 26 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 27 27 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 28 28 H 1.08995 * 109.47354 * 300.00131 * 12 11 10 29 29 H 1.09008 * 109.47118 * 60.00066 * 12 11 10 30 30 H 1.09005 * 109.51415 * 302.45286 * 15 13 12 31 31 H 1.09001 * 109.51653 * 62.60458 * 15 13 12 32 32 H 1.08004 * 124.91125 * 359.68984 * 18 17 16 33 33 H 1.08003 * 124.90831 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5310 -4.8996 0.0011 12 6 2.3709 -6.0557 0.0006 13 6 1.5037 -7.3162 0.0020 14 1 0.8110 -7.2824 -0.8389 15 6 2.3989 -8.5533 -0.1219 16 8 1.5773 -9.7267 -0.1779 17 6 0.5751 -9.7697 0.7724 18 6 -0.0913 -10.8771 1.1156 19 16 -1.2745 -10.5107 2.3610 20 6 -0.8001 -8.8196 2.3608 21 6 0.1761 -8.6144 1.4703 22 8 0.7649 -7.3879 1.2285 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6242 -2.5567 0.8904 25 1 0.6248 -2.5571 -0.8896 26 1 2.8720 -3.6043 -0.8895 27 1 2.8721 -3.6042 0.8905 28 1 2.9996 -6.0476 -0.8898 29 1 3.0009 -6.0475 0.8902 30 1 2.9954 -8.4815 -1.0314 31 1 3.0589 -8.6132 0.7435 32 1 0.0739 -11.8553 0.6886 33 1 -1.2341 -8.0559 2.9891 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205648899.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:05 Heat of formation + Delta-G solvation = -92.794390 kcal Electronic energy + Delta-G solvation = -17894.136880 eV Core-core repulsion = 14819.465875 eV Total energy + Delta-G solvation = -3074.671005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.13051 -37.80384 -37.00081 -35.92736 -33.61080 -31.44307 -29.56774 -29.33601 -25.79894 -23.96770 -23.88169 -22.45761 -21.25620 -19.49064 -19.12337 -17.19500 -16.97054 -16.55041 -16.11683 -15.72432 -15.38630 -14.89263 -14.74408 -14.42718 -13.89727 -13.66986 -13.39853 -12.98212 -12.72959 -12.60555 -11.76299 -11.52550 -11.45796 -11.25223 -10.99701 -10.86128 -10.80100 -10.45438 -10.13907 -9.80127 -9.12565 -8.73411 -8.67937 -8.35533 -8.13412 -6.40820 -4.10933 0.72636 1.28245 1.49421 2.28128 3.11951 3.32779 3.41751 3.44277 3.62878 3.65578 4.10674 4.46164 4.53308 4.62650 4.87878 5.04322 5.15682 5.18417 5.29780 5.35288 5.37817 5.48251 5.60635 5.94034 6.05807 6.09304 6.50863 6.66119 6.97066 7.20316 7.46970 7.72201 8.14473 8.40080 8.82264 9.62266 11.00622 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038226 B = 0.003200 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.314406 B = 8748.136795 C = 9332.993535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.017 3.983 3 Si 1.072 2.928 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.607 4.607 8 H 0.050 0.950 9 C 0.012 3.988 10 C 0.075 3.925 11 O -0.385 6.385 12 C 0.071 3.929 13 C 0.053 3.947 14 H 0.092 0.908 15 C 0.028 3.972 16 O -0.291 6.291 17 C 0.048 3.952 18 C -0.240 4.240 19 S 0.163 5.837 20 C -0.236 4.236 21 C 0.051 3.949 22 O -0.275 6.275 23 H 0.271 0.729 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.174 0.826 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.351 -22.935 2.266 23.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.187 4.187 3 Si 0.900 3.100 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.645 4.645 8 H 0.068 0.932 9 C -0.025 4.025 10 C 0.000 4.000 11 O -0.304 6.304 12 C -0.006 4.006 13 C -0.004 4.004 14 H 0.110 0.890 15 C -0.048 4.048 16 O -0.206 6.206 17 C -0.009 4.009 18 C -0.376 4.376 19 S 0.422 5.578 20 C -0.372 4.372 21 C -0.005 4.005 22 O -0.190 6.190 23 H 0.081 0.919 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.097 0.903 32 H 0.192 0.808 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.944 -22.088 3.026 22.315 hybrid contribution 1.701 -0.761 -0.885 2.063 sum 2.645 -22.849 2.141 23.101 Atomic orbital electron populations 1.70757 1.06885 1.30876 1.45884 1.25887 0.96539 1.02724 0.93597 0.83499 0.74843 0.75113 0.76524 1.20637 1.21385 1.21365 1.21872 0.94254 0.91525 1.56853 0.93169 1.19201 0.94902 0.91103 0.97270 1.22772 0.96142 0.82469 0.98626 1.87983 1.33496 1.13611 1.95332 1.22233 0.92131 0.85014 1.01248 1.23151 0.94567 0.95224 0.87475 0.89007 1.23522 0.92367 0.83511 1.05399 1.87018 1.41930 1.41397 1.50287 1.18584 0.94372 0.92773 0.95170 1.24558 1.05197 1.01458 1.06388 1.84073 1.37350 1.00126 1.36209 1.24626 1.03134 1.01351 1.08084 1.18645 0.96916 0.85595 0.99378 1.87221 1.65430 1.26905 1.39451 0.91851 0.96509 0.96615 0.94281 0.94234 0.91256 0.92417 0.85607 0.90293 0.80824 0.80544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.37 13.65 55.43 0.76 -27.61 16 2 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 3 Si 1.07 25.31 29.90 -169.99 -5.08 20.23 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.61 -17.60 9.11 -34.44 -0.31 -17.91 16 8 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.01 0.33 4.65 -27.88 -0.13 0.20 16 10 C 0.08 1.66 5.88 37.16 0.22 1.87 16 11 O -0.38 -7.83 10.31 -39.63 -0.41 -8.24 16 12 C 0.07 1.04 5.61 37.16 0.21 1.25 16 13 C 0.05 0.73 3.20 -26.63 -0.09 0.64 16 14 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 15 C 0.03 0.30 6.42 37.26 0.24 0.54 16 16 O -0.29 -3.61 10.77 -34.63 -0.37 -3.99 16 17 C 0.05 0.61 6.56 -40.22 -0.26 0.35 16 18 C -0.24 -2.49 11.19 29.15 0.33 -2.17 16 19 S 0.16 1.50 23.32 -107.50 -2.51 -1.01 16 20 C -0.24 -2.85 11.19 29.15 0.33 -2.53 16 21 C 0.05 0.72 6.56 -40.22 -0.26 0.45 16 22 O -0.27 -4.44 10.38 -43.27 -0.45 -4.89 16 23 H 0.27 8.50 7.22 -40.82 -0.29 8.21 16 24 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 25 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.17 1.40 8.06 -52.48 -0.42 0.97 16 33 H 0.18 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 299.55 15.07 4.51 4.51 Total: -1.00 -33.60 299.55 -7.52 -41.12 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -4.13 Total: -3.23 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 0.16 Total: -16.90 kcal Atomic # 7 Polarization: -28.37 SS G_CDS: 0.76 Total: -27.61 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -1.23 Total: -17.12 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.51 Total: -1.01 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.60 -7.52 -41.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648899.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.679 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds