Wall clock time and date at job start Mon Mar 30 2020 01:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47036 * 179.97438 * 10 9 7 12 12 C 1.42901 * 113.99948 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47084 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.51003 * 55.00488 * 13 12 11 15 15 C 1.53202 * 109.51254 * 175.10254 * 13 12 11 16 16 O 1.43359 * 109.22563 * 182.46079 * 15 13 12 17 17 C 1.38180 * 114.47107 * 313.41689 * 16 15 13 18 18 C 1.33727 * 124.31190 * 196.74267 * 17 16 15 19 19 S 1.75647 * 110.17632 * 179.70975 * 18 17 16 20 20 C 1.75642 * 91.07885 * 0.04116 * 19 18 17 21 21 C 1.33718 * 110.18208 * 0.03025 * 20 19 18 22 22 O 1.38184 * 124.31704 * 179.84105 * 21 20 19 23 23 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 25 25 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 26 26 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 27 27 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 28 28 H 1.08995 * 109.47354 * 300.00131 * 12 11 10 29 29 H 1.09008 * 109.47118 * 60.00066 * 12 11 10 30 30 H 1.09005 * 109.51415 * 302.45286 * 15 13 12 31 31 H 1.09001 * 109.51653 * 62.60458 * 15 13 12 32 32 H 1.08004 * 124.91125 * 359.68984 * 18 17 16 33 33 H 1.08003 * 124.90831 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5310 -4.8996 0.0011 12 6 2.3709 -6.0557 0.0006 13 6 1.5037 -7.3162 0.0020 14 1 0.8110 -7.2824 -0.8389 15 6 2.3989 -8.5533 -0.1219 16 8 1.5773 -9.7267 -0.1779 17 6 0.5751 -9.7697 0.7724 18 6 -0.0913 -10.8771 1.1156 19 16 -1.2745 -10.5107 2.3610 20 6 -0.8001 -8.8196 2.3608 21 6 0.1761 -8.6144 1.4703 22 8 0.7649 -7.3879 1.2285 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6242 -2.5567 0.8904 25 1 0.6248 -2.5571 -0.8896 26 1 2.8720 -3.6043 -0.8895 27 1 2.8721 -3.6042 0.8905 28 1 2.9996 -6.0476 -0.8898 29 1 3.0009 -6.0475 0.8902 30 1 2.9954 -8.4815 -1.0314 31 1 3.0589 -8.6132 0.7435 32 1 0.0739 -11.8553 0.6886 33 1 -1.2341 -8.0559 2.9891 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205648899.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:04 Heat of formation + Delta-G solvation = -115.893285 kcal Electronic energy + Delta-G solvation = -17895.138524 eV Core-core repulsion = 14819.465875 eV Total energy + Delta-G solvation = -3075.672648 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.06235 -39.21296 -38.03296 -36.94190 -35.74134 -32.75292 -31.27248 -30.32843 -27.05109 -25.88109 -24.78243 -23.59846 -23.17087 -20.43249 -20.08258 -19.03400 -18.08637 -17.60277 -17.48258 -16.88890 -16.72068 -15.91495 -15.84832 -15.66382 -15.47182 -15.26776 -14.49885 -14.42645 -14.05872 -13.79313 -13.56655 -13.01433 -12.80274 -12.38847 -12.24491 -12.09668 -12.01531 -11.92029 -11.85069 -11.66646 -10.86691 -10.72559 -10.54849 -9.62360 -8.96736 -8.76673 -6.48515 -0.15487 0.47116 0.64286 1.34273 1.53071 1.62533 1.81805 2.19893 2.35499 2.49648 2.61569 3.10799 3.16027 3.53412 3.68401 3.74544 4.13446 4.21787 4.21987 4.29312 4.34845 4.40743 4.45632 4.58194 4.61025 4.72520 5.04736 5.06675 5.28151 5.60721 5.81871 6.01154 6.08875 6.22457 6.45266 7.36383 8.64558 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038226 B = 0.003200 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.314406 B = 8748.136795 C = 9332.993535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.040 4.040 3 Si 1.125 2.875 4 H -0.284 1.284 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.621 4.621 8 H 0.063 0.937 9 C 0.010 3.990 10 C 0.092 3.908 11 O -0.414 6.414 12 C 0.065 3.935 13 C 0.051 3.949 14 H 0.078 0.922 15 C 0.035 3.965 16 O -0.299 6.299 17 C 0.020 3.980 18 C -0.235 4.235 19 S 0.231 5.769 20 C -0.256 4.256 21 C 0.020 3.980 22 O -0.310 6.310 23 H 0.254 0.746 24 H -0.014 1.014 25 H -0.009 1.009 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.160 0.840 31 H 0.088 0.912 32 H 0.200 0.800 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 -24.211 2.147 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.237 4.237 3 Si 0.945 3.055 4 H -0.209 1.209 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.659 4.659 8 H 0.081 0.919 9 C -0.027 4.027 10 C 0.016 3.984 11 O -0.334 6.334 12 C -0.011 4.011 13 C -0.007 4.007 14 H 0.096 0.904 15 C -0.041 4.041 16 O -0.215 6.215 17 C -0.036 4.036 18 C -0.371 4.371 19 S 0.492 5.508 20 C -0.392 4.392 21 C -0.036 4.036 22 O -0.227 6.227 23 H 0.063 0.937 24 H 0.005 0.995 25 H 0.009 0.991 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.178 0.822 31 H 0.106 0.894 32 H 0.217 0.783 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.633 -23.420 2.913 23.747 hybrid contribution 1.069 -0.520 -0.791 1.428 sum 3.703 -23.940 2.122 24.318 Atomic orbital electron populations 1.70905 1.08184 1.29861 1.48202 1.27668 0.96525 1.07234 0.92263 0.82856 0.74031 0.70287 0.78351 1.20938 1.18835 1.19031 1.22305 0.95080 0.92390 1.56121 0.91901 1.19127 0.95424 0.93551 0.94624 1.22363 0.94389 0.81847 0.99800 1.87919 1.35340 1.14523 1.95632 1.22583 0.92124 0.83017 1.03371 1.23222 0.94745 0.96308 0.86376 0.90415 1.23654 0.91526 0.81362 1.07544 1.86985 1.42153 1.41902 1.50463 1.18723 0.95665 0.92967 0.96245 1.25039 1.04261 1.01940 1.05825 1.83824 1.35518 0.96940 1.34523 1.24994 1.02883 1.03696 1.07650 1.18994 0.98174 0.85505 1.00899 1.87140 1.66385 1.28623 1.40509 0.93702 0.99534 0.99077 0.92490 0.93431 0.87762 0.91405 0.82214 0.89389 0.78326 0.80493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.90 13.65 21.45 0.29 -59.61 16 2 C -0.04 -2.34 5.46 84.65 0.46 -1.88 16 3 Si 1.13 50.05 29.90 68.60 2.05 52.10 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.62 -36.22 9.11 25.60 0.23 -35.99 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.01 0.55 4.65 29.85 0.14 0.69 16 10 C 0.09 4.02 5.88 71.98 0.42 4.44 16 11 O -0.41 -17.03 10.31 -144.77 -1.49 -18.52 16 12 C 0.07 1.84 5.61 71.98 0.40 2.24 16 13 C 0.05 1.38 3.20 30.66 0.10 1.48 16 14 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 15 C 0.03 0.68 6.42 72.05 0.46 1.14 16 16 O -0.30 -7.05 10.77 -112.74 -1.21 -8.27 16 17 C 0.02 0.50 6.56 21.86 0.14 0.64 16 18 C -0.23 -4.40 11.19 66.79 0.75 -3.65 16 19 S 0.23 3.81 23.32 -56.49 -1.32 2.50 16 20 C -0.26 -6.19 11.19 66.79 0.75 -5.44 16 21 C 0.02 0.58 6.56 21.86 0.14 0.73 16 22 O -0.31 -10.36 10.38 -104.55 -1.09 -11.45 16 23 H 0.25 16.71 7.22 -92.71 -0.67 16.04 16 24 H -0.01 -0.84 8.01 -2.39 -0.02 -0.85 16 25 H -0.01 -0.55 8.01 -2.39 -0.02 -0.56 16 26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 28 H 0.10 2.18 8.14 -2.39 -0.02 2.17 16 29 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.16 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.18 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -74.96 299.55 2.45 -72.52 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.21 Total: 6.34 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 4.00 Total: -35.60 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.29 Total: -59.61 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -3.79 Total: -38.24 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.32 Total: 2.50 kcal Total: -74.96 2.45 -72.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648899.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.377 kcal (2) G-P(sol) polarization free energy of solvation -74.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds