Wall clock time and date at job start Mon Mar 30 2020 01:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47045 * 299.99992 * 3 2 1 6 6 H 1.48501 * 109.46950 * 59.99783 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 12 12 Cl 1.80305 * 109.47048 * 184.99810 * 11 9 7 13 13 O 1.42898 * 109.46964 * 179.97438 * 9 7 2 14 14 C 1.42902 * 113.99874 * 150.00106 * 13 9 7 15 15 C 1.53001 * 109.47312 * 179.97438 * 14 13 9 16 16 C 1.50693 * 109.47206 * 179.97438 * 15 14 13 17 17 C 1.38268 * 119.94424 * 269.72510 * 16 15 14 18 18 C 1.38146 * 120.05434 * 179.72508 * 17 16 15 19 19 C 1.38735 * 119.94480 * 0.57397 * 18 17 16 20 20 O 1.35896 * 120.05531 * 179.68604 * 19 18 17 21 21 C 1.38731 * 119.88913 * 359.69738 * 19 18 17 22 22 C 1.38145 * 119.94218 * 0.02562 * 21 19 18 23 23 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47630 * 305.00104 * 11 9 7 25 25 H 1.09004 * 109.47346 * 65.00234 * 11 9 7 26 26 H 1.09002 * 109.47082 * 300.00110 * 14 13 9 27 27 H 1.08997 * 109.47374 * 59.99540 * 14 13 9 28 28 H 1.09004 * 109.46662 * 299.99956 * 15 14 13 29 29 H 1.08997 * 109.47257 * 59.99492 * 15 14 13 30 30 H 1.07993 * 119.96891 * 359.97438 * 17 16 15 31 31 H 1.07995 * 120.02998 * 180.25211 * 18 17 16 32 32 H 0.96703 * 113.99952 * 270.01172 * 20 19 18 33 33 H 1.07997 * 120.03023 * 179.97438 * 21 19 18 34 34 H 1.08002 * 119.97290 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 0.3719 -2.5804 -1.2489 12 17 -0.6386 -4.0719 -1.1768 13 8 2.1797 -3.5852 0.0005 14 6 1.6981 -4.7617 0.6533 15 6 2.7685 -5.8533 0.5923 16 6 2.2608 -7.0937 1.2812 17 6 2.4894 -7.2751 2.6328 18 6 2.0201 -8.4086 3.2677 19 6 1.3293 -9.3711 2.5457 20 8 0.8722 -10.4901 3.1668 21 6 1.1062 -9.1894 1.1886 22 6 1.5726 -8.0514 0.5594 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2756 -1.7048 -1.2953 25 1 1.0038 -2.6123 -2.1365 26 1 1.4712 -4.5325 1.6945 27 1 0.7948 -5.1108 0.1530 28 1 2.9949 -6.0823 -0.4490 29 1 3.6720 -5.5044 1.0923 30 1 3.0317 -6.5281 3.1932 31 1 2.1952 -8.5480 4.3242 32 1 1.5010 -11.2248 3.1665 33 1 0.5691 -9.9373 0.6243 34 1 1.3988 -7.9092 -0.4970 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206725112.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:41 Heat of formation + Delta-G solvation = -108.611235 kcal Electronic energy + Delta-G solvation = -17867.825109 eV Core-core repulsion = 14790.424528 eV Total energy + Delta-G solvation = -3077.400581 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.73179 -39.08650 -37.86539 -36.50193 -35.32296 -33.52955 -31.94306 -30.98628 -28.52742 -27.21352 -24.32865 -23.75825 -22.83394 -21.97161 -19.33710 -18.66468 -17.76350 -17.04573 -16.68337 -16.53439 -16.21246 -15.96439 -15.46523 -14.78861 -14.47947 -14.43139 -14.15947 -13.92632 -13.64555 -13.15046 -12.98861 -12.93175 -12.72590 -12.45708 -12.34479 -12.21840 -12.09054 -11.56061 -11.37156 -11.23312 -11.19445 -10.58444 -9.96139 -9.83600 -9.43029 -8.31404 -6.46469 0.23711 0.39490 1.40403 1.44550 1.57564 1.63424 2.34443 2.62873 2.99650 3.18646 3.34379 3.87916 4.01820 4.10699 4.21424 4.36907 4.45074 4.50600 4.56095 4.59004 4.67699 4.87848 4.96355 4.97952 5.12077 5.18673 5.34289 5.36921 5.44891 5.60172 5.69514 5.90127 5.97058 6.48256 6.82259 6.87647 7.26860 8.75473 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029513 B = 0.004066 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.502506 B = 6884.971847 C = 7430.513489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.021 3.979 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.220 3.780 10 H 0.002 0.998 11 C -0.022 4.022 12 Cl -0.228 7.228 13 O -0.400 6.400 14 C 0.053 3.947 15 C -0.068 4.068 16 C -0.095 4.095 17 C -0.106 4.106 18 C -0.149 4.149 19 C 0.094 3.906 20 O -0.509 6.509 21 C -0.150 4.150 22 C -0.104 4.104 23 H 0.273 0.727 24 H 0.109 0.891 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.410 0.590 33 H 0.143 0.857 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.864 -15.590 2.664 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.180 4.180 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.083 0.917 9 C 0.162 3.838 10 H 0.020 0.980 11 C -0.085 4.085 12 Cl -0.202 7.202 13 O -0.320 6.320 14 C -0.024 4.024 15 C -0.105 4.105 16 C -0.095 4.095 17 C -0.124 4.124 18 C -0.168 4.168 19 C 0.050 3.950 20 O -0.322 6.322 21 C -0.168 4.168 22 C -0.122 4.122 23 H 0.082 0.918 24 H 0.127 0.873 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.153 0.847 31 H 0.162 0.838 32 H 0.269 0.731 33 H 0.161 0.839 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.317 -15.243 2.678 15.828 hybrid contribution 0.181 0.572 0.041 0.601 sum 3.498 -14.672 2.719 15.326 Atomic orbital electron populations 1.69917 1.07168 1.28625 1.49476 1.25782 0.95913 1.02789 0.93471 0.85218 0.78765 0.77903 0.78094 1.19131 1.19772 1.20156 1.21361 0.94050 0.89841 1.52699 0.91721 1.19745 0.87340 0.84997 0.91670 0.97992 1.25508 0.94943 0.86003 1.02082 1.98594 1.75326 1.47297 1.98963 1.87780 1.43549 1.22474 1.78245 1.22794 0.98007 0.86082 0.95497 1.20383 0.97822 0.90778 1.01550 1.19839 0.99462 0.95707 0.94534 1.21176 0.99671 0.97655 0.93862 1.21596 0.98967 0.94912 1.01291 1.18587 0.96577 0.89247 0.90572 1.84774 1.45942 1.23256 1.78266 1.21592 1.01688 0.99340 0.94194 1.21154 0.97021 0.93299 1.00753 0.91753 0.87265 0.90606 0.95617 0.92054 0.90008 0.90221 0.84659 0.83789 0.73100 0.83888 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.41 11.29 21.45 0.24 -49.16 16 2 C 0.02 1.09 5.29 84.65 0.45 1.54 16 3 Si 0.98 41.40 29.54 68.60 2.03 43.42 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -29.47 8.89 25.60 0.23 -29.25 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 9 C 0.22 11.25 2.38 29.85 0.07 11.32 16 10 H 0.00 0.13 7.79 -2.39 -0.02 0.11 16 11 C -0.02 -1.06 6.17 71.98 0.44 -0.62 16 12 Cl -0.23 -9.41 26.09 -2.72 -0.07 -9.48 16 13 O -0.40 -18.77 9.95 -148.98 -1.48 -20.26 16 14 C 0.05 2.05 5.52 71.98 0.40 2.45 16 15 C -0.07 -2.08 5.71 29.85 0.17 -1.91 16 16 C -0.10 -2.57 5.13 -19.85 -0.10 -2.67 16 17 C -0.11 -2.59 9.69 22.25 0.22 -2.38 16 18 C -0.15 -3.29 9.99 22.37 0.22 -3.07 16 19 C 0.09 2.07 6.70 22.51 0.15 2.22 16 20 O -0.51 -9.31 13.50 -92.38 -1.25 -10.56 16 21 C -0.15 -3.33 9.99 22.37 0.22 -3.11 16 22 C -0.10 -2.58 9.69 22.26 0.22 -2.37 16 23 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 24 H 0.11 5.61 5.95 -2.39 -0.01 5.59 16 25 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 26 H 0.03 1.03 8.09 -2.39 -0.02 1.01 16 27 H 0.06 2.40 5.09 -2.39 -0.01 2.39 16 28 H 0.08 2.39 8.09 -2.38 -0.02 2.37 16 29 H 0.08 2.34 8.08 -2.39 -0.02 2.32 16 30 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.41 3.11 9.06 -74.06 -0.67 2.44 16 33 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 34 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -60.64 305.50 2.59 -58.05 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.44 Total: 15.82 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 2.69 Total: -27.83 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.24 Total: -49.16 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -2.73 Total: -30.82 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 17 Polarization: -9.41 SS G_CDS: -0.07 Total: -9.48 kcal Total: -60.64 2.59 -58.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206725112.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.565 kcal (2) G-P(sol) polarization free energy of solvation -60.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds