Wall clock time and date at job start Mon Mar 30 2020 00:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 H 1.09009 * 109.46602 * 60.00278 * 5 3 2 7 7 O 1.42891 * 109.47292 * 179.97438 * 5 3 2 8 8 C 1.34924 * 117.00658 * 270.00352 * 7 5 3 9 9 H 1.08003 * 119.99744 * 0.02562 * 8 7 5 10 10 C 1.38633 * 120.00580 * 180.02562 * 8 7 5 11 11 N 1.31581 * 119.99727 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00272 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47112 * 90.00025 * 12 10 8 14 14 H 1.48498 * 109.47553 * 209.99810 * 12 10 8 15 15 H 1.48502 * 109.47022 * 330.00085 * 12 10 8 16 16 C 1.50692 * 109.47099 * 300.00642 * 5 3 2 17 17 C 1.38260 * 119.99615 * 99.99670 * 16 5 3 18 18 C 1.38224 * 120.02656 * 179.97438 * 17 16 5 19 19 C 1.38236 * 120.01273 * 359.97438 * 18 17 16 20 20 C 1.38329 * 119.98852 * 359.97438 * 19 18 17 21 21 Cl 1.73598 * 120.01270 * 180.02562 * 20 19 18 22 22 C 1.38196 * 119.99337 * 279.71574 * 16 5 3 23 23 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 24 24 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 26 26 H 0.97008 * 119.99748 * 180.02562 * 11 10 8 27 27 H 1.08000 * 119.98603 * 359.97438 * 17 16 5 28 28 H 1.08005 * 119.99137 * 179.97438 * 18 17 16 29 29 H 1.08007 * 120.00079 * 180.02562 * 19 18 17 30 30 H 1.08011 * 120.00362 * 0.02564 * 22 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9564 0.7807 -0.8893 7 8 3.9714 2.6453 -0.0001 8 6 4.1456 3.2320 -1.2026 9 1 3.9787 2.6676 -2.1081 10 6 4.5386 4.5595 -1.2758 11 7 4.7413 5.2473 -0.1726 12 14 4.7803 5.3716 -2.9406 13 1 3.5019 5.9842 -3.3828 14 1 5.8219 6.4244 -2.8313 15 1 5.2093 4.3518 -3.9311 16 6 4.1047 0.5920 1.2313 17 6 4.5993 -0.6963 1.1463 18 6 5.0938 -1.3232 2.2747 19 6 5.0945 -0.6620 3.4887 20 6 4.6007 0.6273 3.5741 21 17 4.6020 1.4584 5.0982 22 6 4.1093 1.2556 2.4434 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 5.0160 6.1763 -0.2238 27 1 4.5993 -1.2131 0.1980 28 1 5.4796 -2.3297 2.2077 29 1 5.4813 -1.1519 4.3701 30 1 3.7267 2.2636 2.5088 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224381826.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:26 Heat of formation + Delta-G solvation = -117.187568 kcal Electronic energy + Delta-G solvation = -18307.131513 eV Core-core repulsion = 15093.525939 eV Total energy + Delta-G solvation = -3213.605573 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.67314 -40.20703 -38.50801 -37.43387 -37.15655 -34.28182 -32.79890 -31.71309 -29.41442 -27.73139 -26.40645 -23.65004 -23.33254 -21.76990 -19.89808 -18.88560 -18.18998 -17.93511 -17.37774 -16.96978 -16.43051 -16.16079 -15.60287 -15.18232 -14.92273 -14.55909 -14.37705 -14.24626 -13.62175 -13.35816 -13.19563 -12.96634 -12.57739 -12.51391 -12.44797 -12.35480 -12.09158 -11.81055 -11.78785 -11.50861 -11.33799 -10.30100 -9.89544 -9.66180 -8.22876 -5.94741 0.13483 0.28261 1.13096 1.18803 1.36736 1.44256 1.52968 1.71146 2.28444 2.66002 3.13590 3.45591 3.64717 3.93608 4.03536 4.20787 4.23103 4.29081 4.31987 4.43000 4.50084 4.65347 4.73384 4.92717 5.12594 5.26758 5.30406 5.35454 5.52902 5.85555 6.11922 6.76881 7.18728 7.81991 9.00187 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.006905 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.857987 B = 4054.157893 C = 5018.835433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.437 3.563 4 O -0.528 6.528 5 C 0.139 3.861 6 H 0.111 0.889 7 O -0.283 6.283 8 C -0.384 4.384 9 H 0.080 0.920 10 C -0.034 4.034 11 N -0.931 5.931 12 Si 1.005 2.995 13 H -0.277 1.277 14 H -0.276 1.276 15 H -0.250 1.250 16 C -0.082 4.082 17 C -0.089 4.089 18 C -0.094 4.094 19 C -0.101 4.101 20 C -0.049 4.049 21 Cl -0.078 7.078 22 C -0.103 4.103 23 H 0.051 0.949 24 H 0.143 0.857 25 H 0.056 0.944 26 H 0.262 0.738 27 H 0.161 0.839 28 H 0.183 0.817 29 H 0.165 0.835 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 -17.373 3.528 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.280 3.720 4 O -0.416 6.416 5 C 0.077 3.923 6 H 0.129 0.871 7 O -0.197 6.197 8 C -0.462 4.462 9 H 0.098 0.902 10 C -0.228 4.228 11 N -0.574 5.574 12 Si 0.826 3.174 13 H -0.203 1.203 14 H -0.201 1.201 15 H -0.173 1.173 16 C -0.083 4.083 17 C -0.106 4.106 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.075 4.075 21 Cl -0.049 7.049 22 C -0.122 4.122 23 H 0.070 0.930 24 H 0.161 0.839 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.179 0.821 28 H 0.200 0.800 29 H 0.182 0.818 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.149 -16.744 3.895 17.230 hybrid contribution -0.573 1.415 -0.539 1.619 sum -1.722 -15.329 3.356 15.786 Atomic orbital electron populations 1.23538 0.75546 1.05820 1.01872 1.86521 1.24515 1.32255 1.83879 1.25512 0.93521 0.81512 0.71430 1.90635 1.67319 1.38083 1.45551 1.20446 0.85321 0.87894 0.98591 0.87129 1.85805 1.83457 1.20156 1.30270 1.21393 1.45887 0.95761 0.83194 0.90218 1.26232 0.97916 0.95976 1.02725 1.70209 1.48500 1.09518 1.29213 0.84779 0.77962 0.78351 0.76270 1.20319 1.20069 1.17329 1.19415 1.01357 0.95724 0.91781 1.21418 0.95731 0.91977 1.01514 1.21532 0.97962 1.01562 0.90130 1.21470 0.98353 0.91432 1.00679 1.20997 1.04946 0.95176 0.86399 1.98343 1.97391 1.79149 1.29997 1.20809 0.99822 0.99284 0.92290 0.93030 0.83859 0.92555 0.92954 0.82142 0.79967 0.81788 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.56 113.37 1.20 1.86 16 2 O -0.35 -12.06 10.48 -51.40 -0.54 -12.60 16 3 C 0.44 19.30 7.27 71.24 0.52 19.81 16 4 O -0.53 -28.09 16.20 28.39 0.46 -27.63 16 5 C 0.14 6.14 2.87 29.10 0.08 6.23 16 6 H 0.11 4.31 7.66 -2.38 -0.02 4.29 16 7 O -0.28 -16.50 8.29 -62.85 -0.52 -17.02 16 8 C -0.38 -22.72 9.71 67.91 0.66 -22.06 16 9 H 0.08 4.32 7.64 -2.91 -0.02 4.29 16 10 C -0.03 -2.04 5.49 84.82 0.47 -1.57 16 11 N -0.93 -60.43 13.67 21.61 0.30 -60.13 16 12 Si 1.00 45.67 29.55 68.60 2.03 47.70 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 15 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 16 C -0.08 -3.07 4.90 -19.87 -0.10 -3.17 16 17 C -0.09 -2.31 9.67 22.27 0.22 -2.09 16 18 C -0.09 -1.89 10.05 22.27 0.22 -1.66 16 19 C -0.10 -2.35 9.83 22.29 0.22 -2.14 16 20 C -0.05 -1.57 6.32 22.32 0.14 -1.43 16 21 Cl -0.08 -2.40 28.96 -2.72 -0.08 -2.48 16 22 C -0.10 -4.17 9.14 22.29 0.20 -3.96 16 23 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 24 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.06 1.50 8.13 -2.38 -0.02 1.48 16 26 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 27 H 0.16 3.16 8.04 -2.91 -0.02 3.14 16 28 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 30 H 0.10 4.69 7.77 -2.91 -0.02 4.67 16 Total: -1.00 -80.47 294.23 6.63 -73.84 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.16 Total: 8.51 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 3.83 Total: -10.20 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.30 Total: -60.13 kcal Atomic # 8 Polarization: -56.65 SS G_CDS: -0.60 Total: -57.25 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 17 Polarization: -2.40 SS G_CDS: -0.08 Total: -2.48 kcal Total: -80.47 6.63 -73.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381826.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.346 kcal (2) G-P(sol) polarization free energy of solvation -80.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds