Wall clock time and date at job start Mon Mar 30 2020 00:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00583 * 2 1 4 4 O 1.20836 * 119.99625 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00633 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.47082 * 305.00485 * 5 3 2 7 7 O 1.42895 * 109.47402 * 184.99783 * 5 3 2 8 8 C 1.34933 * 116.99834 * 90.00226 * 7 5 3 9 9 H 1.08001 * 119.99686 * 359.97438 * 8 7 5 10 10 C 1.38628 * 120.00134 * 179.97438 * 8 7 5 11 11 N 1.31578 * 120.00355 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99793 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47128 * 90.00563 * 12 10 8 14 14 H 1.48502 * 109.46885 * 210.00000 * 12 10 8 15 15 H 1.48500 * 109.47331 * 329.99826 * 12 10 8 16 16 C 1.50707 * 109.46572 * 64.99942 * 5 3 2 17 17 C 1.38237 * 120.00392 * 95.23700 * 16 5 3 18 18 C 1.38219 * 120.01452 * 180.25422 * 17 16 5 19 19 C 1.38267 * 120.02305 * 359.74114 * 18 17 16 20 20 C 1.38195 * 120.01443 * 0.02562 * 19 18 17 21 21 C 1.38325 * 120.00626 * 274.99773 * 16 5 3 22 22 Cl 1.73599 * 120.01741 * 0.03066 * 21 16 5 23 23 H 1.08996 * 109.47432 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47129 * 300.00119 * 1 2 3 25 25 H 1.09002 * 109.47037 * 59.99560 * 1 2 3 26 26 H 0.96998 * 120.00801 * 179.97438 * 11 10 8 27 27 H 1.08000 * 119.99782 * 359.97136 * 17 16 5 28 28 H 1.08001 * 119.99260 * 179.72556 * 18 17 16 29 29 H 1.08003 * 119.99358 * 180.02562 * 19 18 17 30 30 H 1.08001 * 120.00765 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9597 0.7053 0.8426 7 8 3.9718 2.6400 0.1178 8 6 4.1507 3.1209 1.3658 9 1 3.9872 2.4803 2.2199 10 6 4.5443 4.4370 1.5518 11 7 4.7430 5.2176 0.5113 12 14 4.7925 5.1024 3.2795 13 1 6.2007 4.8832 3.6968 14 1 4.4916 6.5565 3.2979 15 1 3.8826 4.3968 4.2173 16 6 4.0999 0.7011 -1.2869 17 6 4.3903 1.5376 -2.3484 18 6 4.8746 1.0111 -3.5311 19 6 5.0740 -0.3518 -3.6513 20 6 4.7886 -1.1885 -2.5891 21 6 4.3037 -0.6619 -1.4048 22 17 3.9443 -1.7124 -0.0703 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 5.0180 6.1386 0.6413 27 1 4.2344 2.6022 -2.2553 28 1 5.0972 1.6645 -4.3618 29 1 5.4528 -0.7626 -4.5755 30 1 4.9439 -2.2531 -2.6832 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224381843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:27 Heat of formation + Delta-G solvation = -114.205181 kcal Electronic energy + Delta-G solvation = -18604.952651 eV Core-core repulsion = 15391.476404 eV Total energy + Delta-G solvation = -3213.476247 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.68125 -40.21215 -38.48236 -37.35386 -37.18971 -34.32880 -32.82209 -31.68119 -29.39641 -27.72227 -26.44116 -23.59027 -23.34229 -21.76025 -19.92774 -18.90238 -18.22643 -17.95096 -17.37904 -17.05283 -16.37509 -16.11427 -15.55941 -15.07664 -14.92064 -14.69413 -14.35244 -14.19724 -13.67303 -13.35288 -13.23656 -12.94639 -12.61707 -12.45982 -12.39981 -12.31667 -12.14259 -11.77576 -11.70653 -11.44661 -11.39527 -10.32294 -9.86773 -9.63998 -8.25470 -5.97125 0.11147 0.29907 1.11817 1.21818 1.35238 1.42486 1.51393 1.71503 2.27110 2.68387 3.10565 3.36316 3.61961 3.92182 4.11109 4.13090 4.25615 4.30445 4.31165 4.44896 4.53760 4.64184 4.66223 5.00207 5.10307 5.26043 5.29659 5.44743 5.51999 5.88582 6.10840 6.75926 7.16105 7.77989 8.97538 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.007374 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.248149 B = 3796.331420 C = 4403.740601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.348 6.348 3 C 0.441 3.559 4 O -0.527 6.527 5 C 0.140 3.860 6 H 0.094 0.906 7 O -0.278 6.278 8 C -0.389 4.389 9 H 0.073 0.927 10 C -0.029 4.029 11 N -0.927 5.927 12 Si 1.004 2.996 13 H -0.261 1.261 14 H -0.276 1.276 15 H -0.264 1.264 16 C -0.098 4.098 17 C -0.097 4.097 18 C -0.117 4.117 19 C -0.089 4.089 20 C -0.110 4.110 21 C -0.025 4.025 22 Cl -0.059 7.059 23 H 0.140 0.860 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.264 0.736 27 H 0.105 0.895 28 H 0.153 0.847 29 H 0.178 0.822 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 -15.872 -6.179 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C 0.284 3.716 4 O -0.415 6.415 5 C 0.079 3.921 6 H 0.111 0.889 7 O -0.192 6.192 8 C -0.468 4.468 9 H 0.090 0.910 10 C -0.224 4.224 11 N -0.569 5.569 12 Si 0.825 3.175 13 H -0.186 1.186 14 H -0.201 1.201 15 H -0.188 1.188 16 C -0.099 4.099 17 C -0.115 4.115 18 C -0.135 4.135 19 C -0.107 4.107 20 C -0.128 4.128 21 C -0.052 4.052 22 Cl -0.030 7.030 23 H 0.158 0.842 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.123 0.877 28 H 0.171 0.829 29 H 0.195 0.805 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.451 -15.398 -6.257 16.684 hybrid contribution -0.490 0.846 1.267 1.601 sum -1.941 -14.552 -4.990 15.506 Atomic orbital electron populations 1.23531 0.75697 1.05648 1.01940 1.86604 1.24335 1.31871 1.83675 1.25285 0.93200 0.81638 0.71479 1.90615 1.67204 1.37989 1.45673 1.20255 0.85818 0.88409 0.97647 0.88851 1.85745 1.83601 1.21138 1.28705 1.21336 1.46501 0.96669 0.82250 0.90967 1.26172 0.97686 0.95059 1.03435 1.70168 1.48162 1.07100 1.31511 0.84804 0.79198 0.77628 0.75873 1.18641 1.20117 1.18792 1.19299 1.03210 0.92852 0.94581 1.21082 0.97666 0.99605 0.93162 1.21557 0.98251 0.96986 0.96738 1.21620 0.97357 0.92116 0.99596 1.21393 0.98845 1.02302 0.90257 1.20845 1.03476 0.89073 0.91829 1.98348 1.93302 1.64964 1.46362 0.84187 0.92725 0.92610 0.92739 0.87688 0.82901 0.80465 0.81390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.89 16 2 O -0.35 -12.75 9.30 -51.40 -0.48 -13.23 16 3 C 0.44 20.53 7.23 71.23 0.52 21.04 16 4 O -0.53 -28.69 16.26 28.35 0.46 -28.23 16 5 C 0.14 6.67 2.40 29.10 0.07 6.74 16 6 H 0.09 4.30 6.78 -2.39 -0.02 4.28 16 7 O -0.28 -16.57 7.80 -62.99 -0.49 -17.06 16 8 C -0.39 -23.65 9.77 67.91 0.66 -22.99 16 9 H 0.07 4.13 7.64 -2.91 -0.02 4.11 16 10 C -0.03 -1.72 5.49 84.82 0.47 -1.25 16 11 N -0.93 -59.41 13.67 21.61 0.30 -59.12 16 12 Si 1.00 46.11 29.55 68.60 2.03 48.14 16 13 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 15 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 16 C -0.10 -3.95 5.04 -19.84 -0.10 -4.05 16 17 C -0.10 -3.80 9.35 22.26 0.21 -3.59 16 18 C -0.12 -3.25 10.05 22.27 0.22 -3.03 16 19 C -0.09 -1.87 10.05 22.27 0.22 -1.65 16 20 C -0.11 -2.55 9.83 22.29 0.22 -2.33 16 21 C -0.03 -0.81 6.31 22.32 0.14 -0.66 16 22 Cl -0.06 -1.72 26.16 -2.72 -0.07 -1.79 16 23 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 24 H 0.05 1.56 8.13 -2.38 -0.02 1.54 16 25 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 26 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 27 H 0.10 4.99 7.35 -2.91 -0.02 4.97 16 28 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 29 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 30 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -78.91 288.81 6.73 -72.18 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.16 Total: 8.99 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 3.83 Total: -9.87 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.30 Total: -59.12 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -0.51 Total: -58.52 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.79 kcal Total: -78.91 6.73 -72.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.023 kcal (2) G-P(sol) polarization free energy of solvation -78.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds