Wall clock time and date at job start Mon Mar 30 2020 01:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48506 * 109.47056 * 270.00056 * 3 2 1 5 5 H 1.48501 * 109.47403 * 29.99937 * 3 2 1 6 6 H 1.48493 * 109.47309 * 150.00196 * 3 2 1 7 7 C 1.37877 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00411 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 179.97438 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.38534 * 120.42510 * 104.72042 * 13 12 11 15 15 C 1.38810 * 118.43840 * 179.78353 * 14 13 12 16 16 Cl 1.73600 * 120.39589 * 180.24392 * 15 14 13 17 17 C 1.38257 * 119.19841 * 0.49403 * 15 14 13 18 18 N 1.31904 * 120.77573 * 359.74812 * 17 15 14 19 19 C 1.32055 * 121.70462 * 359.97438 * 18 17 15 20 20 F 1.35097 * 119.63490 * 179.97438 * 19 18 17 21 21 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 22 22 H 0.96995 * 119.99785 * 359.97438 * 1 2 3 23 23 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 24 24 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 25 25 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 26 26 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 27 27 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 28 28 H 1.07999 * 120.77774 * 0.02772 * 14 13 12 29 29 H 1.08001 * 119.60920 * 179.72655 * 17 15 14 30 30 H 1.09007 * 113.75652 * 270.36911 * 21 11 10 31 31 H 1.08993 * 113.76177 * 139.00817 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.1317 -0.9797 1.3914 11 7 5.0990 -2.0373 1.0109 12 6 5.3317 -2.9643 2.1266 13 6 6.1211 -2.2659 3.2037 14 6 5.4994 -1.8448 4.3679 15 6 6.2669 -1.2098 5.3346 16 17 5.5413 -0.6670 6.8154 17 6 7.6150 -1.0103 5.1018 18 7 8.1739 -1.4198 3.9794 19 6 7.4765 -2.0320 3.0399 20 9 8.0915 -2.4334 1.9060 21 6 4.1311 -2.6025 0.0450 22 1 -0.4849 0.8400 0.0004 23 1 3.9361 -0.5532 -0.7738 24 1 4.5830 0.0035 1.5245 25 1 3.4736 -1.2616 2.2133 26 1 4.3746 -3.2920 2.5323 27 1 5.8904 -3.8295 1.7696 28 1 4.4433 -2.0103 4.5214 29 1 8.2175 -0.5130 5.8476 30 1 3.4728 -3.3581 0.4740 31 1 4.5821 -2.9150 -0.8968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231992506.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:20 Heat of formation + Delta-G solvation = 23.678564 kcal Electronic energy + Delta-G solvation = -18127.249929 eV Core-core repulsion = 14964.418310 eV Total energy + Delta-G solvation = -3162.831619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.99507 -40.45639 -38.91743 -36.86410 -33.93845 -32.50134 -31.42078 -29.18556 -26.19342 -25.32326 -23.92823 -23.38812 -21.36621 -18.75202 -18.16094 -17.65865 -17.13392 -16.42659 -16.19074 -15.20154 -14.89730 -14.57978 -13.98408 -13.89024 -13.68443 -13.46962 -13.18228 -12.88705 -12.60654 -12.01161 -11.91439 -11.67048 -11.43149 -11.09278 -10.50005 -10.26916 -10.11232 -10.06091 -9.85595 -9.54946 -9.23028 -8.86813 -8.63463 -8.19215 -6.16389 -4.17336 0.54389 0.78041 1.73468 3.20737 3.25273 3.34304 3.37792 3.40910 4.22127 4.36675 4.39442 4.44249 4.61849 4.89567 5.11654 5.17130 5.46576 5.54969 5.62120 5.67648 5.85948 6.00760 6.20379 6.26352 6.32790 6.40221 6.64036 6.84455 7.27794 7.29027 7.61551 7.67584 8.41497 8.86154 9.46437 10.95988 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.005994 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.041356 B = 4669.951351 C = 5520.726761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.075 3.925 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.256 1.256 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.008 4.008 11 N -0.485 5.485 12 C 0.061 3.939 13 C -0.128 4.128 14 C -0.034 4.034 15 C -0.103 4.103 16 Cl -0.048 7.048 17 C 0.143 3.857 18 N -0.503 5.503 19 C 0.331 3.669 20 F -0.097 7.097 21 C 0.015 3.985 22 H 0.265 0.735 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.156 0.844 29 H 0.174 0.826 30 H 0.065 0.935 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.719 -3.647 11.463 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.180 1.180 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.020 4.020 10 C -0.137 4.137 11 N -0.207 5.207 12 C -0.067 4.067 13 C -0.132 4.132 14 C -0.060 4.060 15 C -0.132 4.132 16 Cl -0.019 7.019 17 C -0.015 4.015 18 N -0.217 5.217 19 C 0.177 3.823 20 F -0.076 7.076 21 C -0.113 4.113 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.173 0.827 29 H 0.191 0.809 30 H 0.084 0.916 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.060 -3.213 11.184 18.251 hybrid contribution -1.209 0.534 0.485 1.407 sum 12.852 -2.680 11.669 17.564 Atomic orbital electron populations 1.69908 1.06388 1.27152 1.50028 1.24995 0.94622 0.99190 0.93958 0.86949 0.80826 0.83506 0.78812 1.20250 1.21464 1.17995 1.20950 0.88263 0.94530 1.51527 0.90753 1.20728 0.96452 0.92388 0.92411 1.24553 0.92733 0.94873 1.01504 1.68760 1.35138 1.08127 1.08716 1.21523 0.98320 0.95959 0.90944 1.20667 0.93070 1.02324 0.97162 1.21473 1.01107 0.92999 0.90430 1.21993 0.94981 1.04830 0.91437 1.98391 1.82997 1.88447 1.32078 1.22431 0.90642 0.95348 0.93038 1.67174 1.39879 1.12671 1.01967 1.17983 0.87319 0.93836 0.83120 1.91658 1.83397 1.86878 1.45631 1.23905 0.92437 0.99131 0.95831 0.92555 0.92860 0.91470 0.91566 0.92228 0.89485 0.82656 0.80913 0.91631 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 20.83 27.08 -169.99 -4.60 16.23 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.26 -5.80 5.27 56.52 0.30 -5.50 16 7 C -0.51 -13.72 9.33 -34.44 -0.32 -14.05 16 8 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 9 C 0.00 -0.01 2.88 -90.84 -0.26 -0.27 16 10 C -0.01 -0.16 6.13 -2.57 -0.02 -0.18 16 11 N -0.48 -8.77 6.26 -239.48 -1.50 -10.27 16 12 C 0.06 0.91 4.66 -4.97 -0.02 0.88 16 13 C -0.13 -1.80 4.94 -104.41 -0.52 -2.32 16 14 C -0.03 -0.42 9.61 -39.26 -0.38 -0.79 16 15 C -0.10 -1.18 6.34 -39.36 -0.25 -1.43 16 16 Cl -0.05 -0.49 28.99 -51.86 -1.50 -1.99 16 17 C 0.14 1.63 10.98 -17.51 -0.19 1.43 16 18 N -0.50 -7.05 10.37 -13.57 -0.14 -7.19 16 19 C 0.33 4.93 8.36 -17.35 -0.15 4.78 16 20 F -0.10 -1.53 16.79 2.25 0.04 -1.49 16 21 C 0.02 0.29 7.53 -2.76 -0.02 0.26 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.05 1.23 7.20 -51.93 -0.37 0.86 16 24 H 0.07 1.41 6.82 -51.93 -0.35 1.05 16 25 H 0.07 1.33 7.74 -51.93 -0.40 0.93 16 26 H 0.06 0.84 7.55 -51.93 -0.39 0.45 16 27 H 0.09 1.18 8.09 -51.92 -0.42 0.76 16 28 H 0.16 1.76 8.05 -52.49 -0.42 1.33 16 29 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.07 1.21 7.74 -51.92 -0.40 0.81 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 284.93 15.07 4.29 4.29 Total: -1.00 -29.17 284.93 -8.13 -37.30 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -3.27 Total: -1.41 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.22 Total: -9.69 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.87 Total: -43.24 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.60 Total: 16.23 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.17 -8.13 -37.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231992506.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.978 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds