Wall clock time and date at job start Mon Mar 30 2020 01:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48506 * 109.47056 * 270.00056 * 3 2 1 5 5 H 1.48501 * 109.47403 * 29.99937 * 3 2 1 6 6 H 1.48493 * 109.47309 * 150.00196 * 3 2 1 7 7 C 1.37877 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00411 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 179.97438 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.38534 * 120.42510 * 104.72042 * 13 12 11 15 15 C 1.38810 * 118.43840 * 179.78353 * 14 13 12 16 16 Cl 1.73600 * 120.39589 * 180.24392 * 15 14 13 17 17 C 1.38257 * 119.19841 * 0.49403 * 15 14 13 18 18 N 1.31904 * 120.77573 * 359.74812 * 17 15 14 19 19 C 1.32055 * 121.70462 * 359.97438 * 18 17 15 20 20 F 1.35097 * 119.63490 * 179.97438 * 19 18 17 21 21 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 22 22 H 0.96995 * 119.99785 * 359.97438 * 1 2 3 23 23 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 24 24 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 25 25 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 26 26 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 27 27 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 28 28 H 1.07999 * 120.77774 * 0.02772 * 14 13 12 29 29 H 1.08001 * 119.60920 * 179.72655 * 17 15 14 30 30 H 1.09007 * 113.75652 * 270.36911 * 21 11 10 31 31 H 1.08993 * 113.76177 * 139.00817 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.1317 -0.9797 1.3914 11 7 5.0990 -2.0373 1.0109 12 6 5.3317 -2.9643 2.1266 13 6 6.1211 -2.2659 3.2037 14 6 5.4994 -1.8448 4.3679 15 6 6.2669 -1.2098 5.3346 16 17 5.5413 -0.6670 6.8154 17 6 7.6150 -1.0103 5.1018 18 7 8.1739 -1.4198 3.9794 19 6 7.4765 -2.0320 3.0399 20 9 8.0915 -2.4334 1.9060 21 6 4.1311 -2.6025 0.0450 22 1 -0.4849 0.8400 0.0004 23 1 3.9361 -0.5532 -0.7738 24 1 4.5830 0.0035 1.5245 25 1 3.4736 -1.2616 2.2133 26 1 4.3746 -3.2920 2.5323 27 1 5.8904 -3.8295 1.7696 28 1 4.4433 -2.0103 4.5214 29 1 8.2175 -0.5130 5.8476 30 1 3.4728 -3.3581 0.4740 31 1 4.5821 -2.9150 -0.8968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231992506.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:20 Heat of formation + Delta-G solvation = 3.790292 kcal Electronic energy + Delta-G solvation = -18128.112349 eV Core-core repulsion = 14964.418310 eV Total energy + Delta-G solvation = -3163.694039 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.11172 -41.51548 -40.37441 -37.73217 -35.25870 -34.33415 -32.50634 -30.64409 -27.74894 -26.89109 -25.01381 -24.72635 -22.68801 -20.42367 -19.19633 -19.10196 -18.68671 -17.45126 -17.36265 -16.75228 -16.38566 -15.88211 -15.46745 -15.01778 -14.87491 -14.74603 -14.47609 -14.27611 -14.12898 -13.44508 -13.13847 -12.95411 -12.91198 -12.39687 -12.15781 -11.85988 -11.78229 -11.57828 -11.18708 -10.94112 -10.85556 -10.68760 -9.88601 -9.69089 -8.29259 -6.33576 -0.44392 -0.19505 0.84517 1.36128 1.39739 1.50070 2.21754 2.36502 2.41235 3.03847 3.12523 3.30005 3.42950 3.52488 3.81518 4.09842 4.14249 4.32452 4.40725 4.53359 4.61540 4.67450 4.70851 4.77126 4.88401 5.01260 5.24499 5.37200 5.48403 5.64613 6.17281 6.29469 6.31968 6.72501 7.33359 8.86503 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.005994 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.041356 B = 4669.951351 C = 5520.726761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.019 3.981 3 Si 0.933 3.067 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.235 1.235 7 C -0.512 4.512 8 H 0.039 0.961 9 C -0.017 4.017 10 C 0.005 3.995 11 N -0.484 5.484 12 C 0.063 3.937 13 C -0.138 4.138 14 C -0.034 4.034 15 C -0.099 4.099 16 Cl -0.032 7.032 17 C 0.151 3.849 18 N -0.519 5.519 19 C 0.314 3.686 20 F -0.109 7.109 21 C 0.025 3.975 22 H 0.265 0.735 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.166 0.834 29 H 0.206 0.794 30 H 0.068 0.932 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.458 -3.152 12.855 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.158 1.158 7 C -0.550 4.550 8 H 0.057 0.943 9 C -0.036 4.036 10 C -0.124 4.124 11 N -0.206 5.206 12 C -0.066 4.066 13 C -0.142 4.142 14 C -0.061 4.061 15 C -0.128 4.128 16 Cl -0.004 7.004 17 C -0.007 4.007 18 N -0.233 5.233 19 C 0.161 3.839 20 F -0.088 7.088 21 C -0.103 4.103 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.183 0.817 29 H 0.223 0.777 30 H 0.086 0.914 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.825 -2.738 12.578 20.399 hybrid contribution -1.764 0.307 0.137 1.795 sum 14.061 -2.431 12.715 19.113 Atomic orbital electron populations 1.70047 1.08209 1.28049 1.52328 1.25802 0.95248 1.02859 0.93942 0.85970 0.80272 0.79037 0.78973 1.20050 1.21529 1.15839 1.21182 0.90621 0.93033 1.50151 0.94317 1.20765 0.93690 0.95210 0.93983 1.24290 0.92861 0.95626 0.99633 1.68690 1.33800 1.08332 1.09794 1.21533 0.99109 0.95700 0.90219 1.20545 0.92737 1.03307 0.97592 1.21640 1.01700 0.92559 0.90151 1.22041 0.95052 1.04069 0.91685 1.98405 1.82783 1.88168 1.31007 1.22982 0.90974 0.94106 0.92611 1.67218 1.40357 1.13140 1.02634 1.18139 0.87708 0.94774 0.83267 1.91621 1.83633 1.87176 1.46333 1.23805 0.92399 0.97125 0.96993 0.92563 0.93211 0.91777 0.91609 0.91420 0.88175 0.81663 0.77731 0.91426 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.25 13.96 21.45 0.30 -56.95 16 2 C 0.02 1.08 5.47 84.65 0.46 1.54 16 3 Si 0.93 42.76 27.08 68.60 1.86 44.62 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.24 -9.89 5.27 99.48 0.52 -9.37 16 7 C -0.51 -27.59 9.33 25.60 0.24 -27.35 16 8 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 9 C -0.02 -0.75 2.88 -10.89 -0.03 -0.78 16 10 C 0.00 0.19 6.13 86.34 0.53 0.72 16 11 N -0.48 -16.57 6.26 -911.59 -5.71 -22.28 16 12 C 0.06 1.73 4.66 85.56 0.40 2.13 16 13 C -0.14 -3.60 4.94 -19.73 -0.10 -3.70 16 14 C -0.03 -0.77 9.61 22.48 0.22 -0.55 16 15 C -0.10 -1.99 6.34 22.41 0.14 -1.84 16 16 Cl -0.03 -0.57 28.99 -2.72 -0.08 -0.65 16 17 C 0.15 2.99 10.98 84.69 0.93 3.92 16 18 N -0.52 -13.47 10.37 -196.84 -2.04 -15.51 16 19 C 0.31 8.82 8.36 84.73 0.71 9.53 16 20 F -0.11 -3.31 16.79 44.97 0.75 -2.55 16 21 C 0.02 0.91 7.53 86.41 0.65 1.56 16 22 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 23 H 0.05 2.24 7.20 -2.39 -0.02 2.22 16 24 H 0.06 2.52 6.82 -2.39 -0.02 2.51 16 25 H 0.07 2.53 7.74 -2.39 -0.02 2.52 16 26 H 0.07 1.77 7.55 -2.39 -0.02 1.75 16 27 H 0.10 2.51 8.09 -2.38 -0.02 2.49 16 28 H 0.17 3.33 8.05 -2.91 -0.02 3.31 16 29 H 0.21 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.07 2.42 7.74 -2.38 -0.02 2.40 16 31 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -62.64 284.93 0.21 -62.43 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 0.97 Total: 5.71 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 4.15 Total: -14.83 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -7.45 Total: -94.73 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.75 Total: -2.55 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.86 Total: 44.62 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -62.64 0.21 -62.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231992506.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.220 kcal (2) G-P(sol) polarization free energy of solvation -62.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds