Wall clock time and date at job start Mon Mar 30 2020 01:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48501 * 109.46971 * 269.99500 * 3 2 1 5 5 H 1.48501 * 109.47027 * 29.99793 * 3 2 1 6 6 H 1.48504 * 109.46793 * 149.99477 * 3 2 1 7 7 C 1.37877 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99981 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00435 * 0.02562 * 7 2 1 10 10 C 1.53509 * 114.17318 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.92936 * 220.13619 * 10 9 7 12 12 C 1.46899 * 111.00017 * 138.70362 * 11 10 9 13 13 C 1.50703 * 109.47107 * 169.99785 * 12 11 10 14 14 N 1.31902 * 119.62751 * 89.99846 * 13 12 11 15 15 C 1.31933 * 121.72870 * 179.97438 * 14 13 12 16 16 Cl 1.73604 * 119.60484 * 180.02562 * 15 14 13 17 17 C 1.38397 * 120.78802 * 359.97438 * 15 14 13 18 18 C 1.38539 * 119.17806 * 0.02562 * 17 15 14 19 19 C 1.38375 * 119.62798 * 269.72668 * 13 12 11 20 20 F 1.35111 * 120.42544 * 0.02562 * 19 13 12 21 21 C 1.47477 * 87.83990 * 27.00857 * 11 10 9 22 22 H 0.96998 * 120.00145 * 0.02562 * 1 2 3 23 23 H 1.09005 * 113.25216 * 312.94597 * 9 7 2 24 24 H 1.09000 * 113.47746 * 105.36950 * 10 9 7 25 25 H 1.08996 * 113.52744 * 334.90577 * 10 9 7 26 26 H 1.09002 * 109.47043 * 289.99765 * 12 11 10 27 27 H 1.09001 * 109.47354 * 49.99826 * 12 11 10 28 28 H 1.08000 * 120.40756 * 180.02562 * 17 15 14 29 29 H 1.07995 * 120.79199 * 179.97438 * 18 17 15 30 30 H 1.09000 * 113.47846 * 87.75378 * 21 11 10 31 31 H 1.08998 * 113.47506 * 218.22798 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.1497 -3.7438 0.0005 11 7 1.2049 -4.3602 -0.9495 12 6 1.9204 -5.0902 -2.0046 13 6 0.9380 -5.9038 -2.8072 14 7 0.3632 -5.3711 -3.8681 15 6 -0.5021 -6.0458 -4.6006 16 17 -1.2254 -5.2906 -5.9865 17 6 -0.8394 -7.3487 -4.2781 18 6 -0.2565 -7.9429 -3.1706 19 6 0.6535 -7.2033 -2.4260 20 9 1.2498 -7.7442 -1.3410 21 6 0.8516 -2.9993 -1.3948 22 1 -0.4850 0.8400 -0.0004 23 1 0.4447 -2.5306 0.7333 24 1 2.1890 -4.2510 0.9645 25 1 3.1381 -3.5668 -0.4233 26 1 2.4248 -4.3800 -2.6598 27 1 2.6573 -5.7536 -1.5518 28 1 -1.5482 -7.8955 -4.8823 29 1 -0.5010 -8.9580 -2.8949 30 1 1.4934 -2.6227 -2.1912 31 1 -0.2091 -2.8756 -1.6132 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232155796.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:13 Heat of formation + Delta-G solvation = 20.609063 kcal Electronic energy + Delta-G solvation = -17876.667293 eV Core-core repulsion = 14713.702570 eV Total energy + Delta-G solvation = -3162.964723 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.02273 -40.35571 -38.78673 -36.74050 -33.40478 -32.55218 -31.59500 -28.89256 -26.04412 -24.78293 -23.78180 -23.43412 -21.50727 -18.64003 -17.89647 -17.54453 -16.99519 -16.47790 -15.95249 -14.86596 -14.66830 -14.27290 -14.19562 -14.03713 -13.83401 -13.61163 -13.10467 -12.46210 -12.00558 -11.71773 -11.57223 -11.40442 -11.20655 -10.96794 -10.64049 -10.31757 -10.18852 -9.97326 -9.62446 -9.31442 -8.95747 -8.75723 -8.42137 -8.07344 -6.03926 -4.08678 0.61678 0.83731 1.65473 3.29235 3.30545 3.37508 3.40177 3.85567 4.15409 4.39419 4.42488 4.57327 4.93219 5.04173 5.23739 5.28145 5.35945 5.51492 5.71500 5.82680 6.08489 6.27493 6.33080 6.48897 6.66450 6.68963 7.11870 7.18764 7.55069 7.72762 7.88777 8.01990 8.37497 8.94329 9.56393 11.05763 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.021676 B = 0.004903 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.416110 B = 5709.519684 C = 6703.769797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.041 3.959 10 C -0.002 4.002 11 N -0.481 5.481 12 C 0.062 3.938 13 C 0.151 3.849 14 N -0.442 5.442 15 C 0.166 3.834 16 Cl -0.027 7.027 17 C -0.137 4.137 18 C -0.099 4.099 19 C 0.066 3.934 20 F -0.119 7.119 21 C 0.013 3.987 22 H 0.262 0.738 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.156 0.844 30 H 0.058 0.942 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 -15.891 -8.904 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.022 3.978 10 C -0.130 4.130 11 N -0.204 5.204 12 C -0.067 4.067 13 C 0.011 3.989 14 N -0.153 5.153 15 C 0.001 3.999 16 Cl 0.002 6.998 17 C -0.158 4.158 18 C -0.126 4.126 19 C 0.044 3.956 20 F -0.098 7.098 21 C -0.116 4.116 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.170 0.830 29 H 0.174 0.826 30 H 0.076 0.924 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.278 -15.354 -9.011 17.849 hybrid contribution 0.786 0.489 -0.276 0.966 sum -0.492 -14.864 -9.287 17.534 Atomic orbital electron populations 1.69971 1.06020 1.26773 1.49503 1.25018 0.94807 0.99183 0.94557 0.86612 0.79911 0.83430 0.78158 1.20621 1.21161 1.19805 1.21007 0.92730 0.90158 1.51564 0.92358 1.20112 0.94248 0.90792 0.92669 1.24031 0.95759 0.97577 0.95675 1.68913 1.27079 1.14931 1.09447 1.21601 0.92942 0.97925 0.94244 1.21305 0.96113 0.90254 0.91253 1.66940 1.07215 1.36417 1.04684 1.21671 0.95696 0.90317 0.92200 1.98411 1.80128 1.83098 1.38205 1.21665 1.01900 0.94027 0.98186 1.21580 0.95304 1.01317 0.94379 1.18519 0.96778 0.93408 0.86930 1.91541 1.81538 1.85457 1.51248 1.24118 1.00497 0.85783 1.01211 0.92848 0.91789 0.91680 0.92467 0.91234 0.89527 0.82965 0.82621 0.92359 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.26 55.43 0.74 -25.06 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.05 8.83 -34.44 -0.30 -14.36 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.04 1.03 3.76 -91.24 -0.34 0.69 16 10 C 0.00 -0.04 7.25 -7.54 -0.05 -0.10 16 11 N -0.48 -9.87 6.32 -246.08 -1.55 -11.43 16 12 C 0.06 1.07 4.93 -4.98 -0.02 1.05 16 13 C 0.15 2.45 6.37 -82.51 -0.53 1.92 16 14 N -0.44 -7.35 10.25 -6.57 -0.07 -7.42 16 15 C 0.17 2.27 7.27 -17.45 -0.13 2.15 16 16 Cl -0.03 -0.34 29.11 -51.86 -1.51 -1.85 16 17 C -0.14 -1.43 9.88 -39.41 -0.39 -1.82 16 18 C -0.10 -1.05 10.16 -39.22 -0.40 -1.45 16 19 C 0.07 0.91 7.27 -39.28 -0.29 0.63 16 20 F -0.12 -1.69 16.48 2.25 0.04 -1.65 16 21 C 0.01 0.30 7.28 -7.54 -0.05 0.24 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.06 1.15 7.87 -51.93 -0.41 0.74 16 26 H 0.07 1.23 7.30 -51.93 -0.38 0.85 16 27 H 0.09 1.33 7.56 -51.93 -0.39 0.94 16 28 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.06 1.39 7.38 -51.93 -0.38 1.01 16 31 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 291.48 15.07 4.39 4.39 Total: -1.00 -29.58 291.48 -8.81 -38.39 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -3.22 Total: -2.23 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.60 Total: -9.28 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.89 Total: -43.90 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.51 Total: -1.85 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.58 -8.81 -38.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232155796.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.999 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds