Wall clock time and date at job start Mon Mar 30 2020 01:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48501 * 109.46971 * 269.99500 * 3 2 1 5 5 H 1.48501 * 109.47027 * 29.99793 * 3 2 1 6 6 H 1.48504 * 109.46793 * 149.99477 * 3 2 1 7 7 C 1.37877 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99981 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00435 * 0.02562 * 7 2 1 10 10 C 1.53509 * 114.17318 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.92936 * 220.13619 * 10 9 7 12 12 C 1.46899 * 111.00017 * 138.70362 * 11 10 9 13 13 C 1.50703 * 109.47107 * 169.99785 * 12 11 10 14 14 N 1.31902 * 119.62751 * 89.99846 * 13 12 11 15 15 C 1.31933 * 121.72870 * 179.97438 * 14 13 12 16 16 Cl 1.73604 * 119.60484 * 180.02562 * 15 14 13 17 17 C 1.38397 * 120.78802 * 359.97438 * 15 14 13 18 18 C 1.38539 * 119.17806 * 0.02562 * 17 15 14 19 19 C 1.38375 * 119.62798 * 269.72668 * 13 12 11 20 20 F 1.35111 * 120.42544 * 0.02562 * 19 13 12 21 21 C 1.47477 * 87.83990 * 27.00857 * 11 10 9 22 22 H 0.96998 * 120.00145 * 0.02562 * 1 2 3 23 23 H 1.09005 * 113.25216 * 312.94597 * 9 7 2 24 24 H 1.09000 * 113.47746 * 105.36950 * 10 9 7 25 25 H 1.08996 * 113.52744 * 334.90577 * 10 9 7 26 26 H 1.09002 * 109.47043 * 289.99765 * 12 11 10 27 27 H 1.09001 * 109.47354 * 49.99826 * 12 11 10 28 28 H 1.08000 * 120.40756 * 180.02562 * 17 15 14 29 29 H 1.07995 * 120.79199 * 179.97438 * 18 17 15 30 30 H 1.09000 * 113.47846 * 87.75378 * 21 11 10 31 31 H 1.08998 * 113.47506 * 218.22798 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.1497 -3.7438 0.0005 11 7 1.2049 -4.3602 -0.9495 12 6 1.9204 -5.0902 -2.0046 13 6 0.9380 -5.9038 -2.8072 14 7 0.3632 -5.3711 -3.8681 15 6 -0.5021 -6.0458 -4.6006 16 17 -1.2254 -5.2906 -5.9865 17 6 -0.8394 -7.3487 -4.2781 18 6 -0.2565 -7.9429 -3.1706 19 6 0.6535 -7.2033 -2.4260 20 9 1.2498 -7.7442 -1.3410 21 6 0.8516 -2.9993 -1.3948 22 1 -0.4850 0.8400 -0.0004 23 1 0.4447 -2.5306 0.7333 24 1 2.1890 -4.2510 0.9645 25 1 3.1381 -3.5668 -0.4233 26 1 2.4248 -4.3800 -2.6598 27 1 2.6573 -5.7536 -1.5518 28 1 -1.5482 -7.8955 -4.8823 29 1 -0.5010 -8.9580 -2.8949 30 1 1.4934 -2.6227 -2.1912 31 1 -0.2091 -2.8756 -1.6132 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232155796.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:13 Heat of formation + Delta-G solvation = 0.504188 kcal Electronic energy + Delta-G solvation = -17877.539106 eV Core-core repulsion = 14713.702570 eV Total energy + Delta-G solvation = -3163.836535 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.07246 -41.48522 -40.44431 -37.72751 -34.98315 -34.04642 -32.86284 -30.38752 -27.76105 -26.59129 -25.18396 -24.60462 -22.89263 -20.52521 -18.94149 -18.80694 -18.46752 -17.80270 -17.16058 -16.64536 -16.32097 -15.79541 -15.56185 -15.13105 -15.08251 -14.76385 -14.31339 -13.92085 -13.73317 -13.37187 -13.08234 -12.84865 -12.64595 -12.44923 -12.36285 -12.12207 -11.77041 -11.31079 -11.04898 -10.90470 -10.80576 -10.51484 -9.89098 -9.76637 -8.15632 -6.27315 -0.39950 -0.10626 0.67088 1.43234 1.43352 1.54376 2.24685 2.42851 2.85293 3.04914 3.13646 3.42720 3.48684 3.65442 3.91307 4.11997 4.20999 4.32389 4.49405 4.53741 4.63857 4.67552 4.74493 4.80820 4.92727 5.19769 5.31424 5.38894 5.61084 5.82874 6.23137 6.29635 6.49414 6.82388 7.41533 8.94499 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.021676 B = 0.004903 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.416110 B = 5709.519684 C = 6703.769797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.021 3.979 10 C 0.014 3.986 11 N -0.479 5.479 12 C 0.064 3.936 13 C 0.120 3.880 14 N -0.480 5.480 15 C 0.147 3.853 16 Cl -0.025 7.025 17 C -0.115 4.115 18 C -0.081 4.081 19 C 0.058 3.942 20 F -0.123 7.123 21 C 0.029 3.971 22 H 0.262 0.738 23 H 0.030 0.970 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.195 0.805 29 H 0.200 0.800 30 H 0.050 0.950 31 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.383 -17.741 -9.533 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.081 0.919 9 C 0.002 3.998 10 C -0.114 4.114 11 N -0.201 5.201 12 C -0.064 4.064 13 C -0.019 4.019 14 N -0.192 5.192 15 C -0.018 4.018 16 Cl 0.004 6.996 17 C -0.136 4.136 18 C -0.107 4.107 19 C 0.036 3.964 20 F -0.102 7.102 21 C -0.100 4.100 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.125 0.875 28 H 0.212 0.788 29 H 0.217 0.783 30 H 0.068 0.932 31 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.864 -17.220 -9.636 19.751 hybrid contribution 0.607 0.962 -0.138 1.146 sum -0.257 -16.258 -9.774 18.971 Atomic orbital electron populations 1.70108 1.07680 1.27606 1.50869 1.25866 0.95586 1.02873 0.94256 0.85538 0.78861 0.78905 0.78262 1.20199 1.20947 1.18603 1.21369 0.93123 0.91232 1.50994 0.91877 1.20059 0.94581 0.92347 0.92798 1.23856 0.95454 0.95321 0.96768 1.68798 1.27805 1.13205 1.10336 1.21557 0.93617 0.97876 0.93395 1.21056 0.97380 0.91435 0.92053 1.66772 1.08684 1.38097 1.05633 1.22060 0.95783 0.91645 0.92325 1.98408 1.79908 1.83376 1.37951 1.22136 1.01088 0.92511 0.97823 1.22065 0.93028 1.02648 0.92969 1.18656 0.97523 0.92968 0.87239 1.91531 1.81773 1.85324 1.51526 1.23753 0.98459 0.87921 0.99879 0.92881 0.95174 0.90075 0.91268 0.92195 0.87515 0.78799 0.78253 0.93203 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.42 13.26 21.45 0.28 -55.13 16 2 C 0.01 0.76 5.46 84.65 0.46 1.22 16 3 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.53 -29.25 8.83 25.60 0.23 -29.02 16 8 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 9 C 0.02 1.11 3.76 -11.20 -0.04 1.07 16 10 C 0.01 0.60 7.25 83.58 0.61 1.20 16 11 N -0.48 -19.83 6.32 -932.45 -5.89 -25.72 16 12 C 0.06 2.21 4.93 85.56 0.42 2.64 16 13 C 0.12 3.82 6.37 42.58 0.27 4.09 16 14 N -0.48 -15.90 10.25 -174.68 -1.79 -17.69 16 15 C 0.15 3.80 7.27 84.72 0.62 4.42 16 16 Cl -0.02 -0.60 29.11 -2.72 -0.08 -0.68 16 17 C -0.12 -2.00 9.88 22.38 0.22 -1.78 16 18 C -0.08 -1.39 10.16 22.50 0.23 -1.16 16 19 C 0.06 1.49 7.27 22.46 0.16 1.66 16 20 F -0.12 -3.21 16.48 44.97 0.74 -2.47 16 21 C 0.03 1.43 7.28 83.58 0.61 2.04 16 22 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 23 H 0.03 1.75 8.11 -2.38 -0.02 1.73 16 24 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 25 H 0.07 2.71 7.87 -2.39 -0.02 2.69 16 26 H 0.06 2.15 7.30 -2.39 -0.02 2.14 16 27 H 0.11 3.17 7.56 -2.39 -0.02 3.15 16 28 H 0.19 1.71 8.06 -2.91 -0.02 1.68 16 29 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 30 H 0.05 2.48 7.38 -2.39 -0.02 2.46 16 31 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -66.26 291.48 0.23 -66.03 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: 1.15 Total: 3.52 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 3.78 Total: -13.63 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -7.40 Total: -98.54 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.74 Total: -2.47 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -66.26 0.23 -66.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232155796.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.536 kcal (2) G-P(sol) polarization free energy of solvation -66.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds