Wall clock time and date at job start Mon Mar 30 2020 01:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99699 * 2 1 4 4 H 1.48501 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47185 * 299.99816 * 3 2 1 6 6 H 1.48498 * 109.47359 * 59.99949 * 3 2 1 7 7 C 1.37866 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00249 * 0.02562 * 7 2 1 10 10 C 1.53513 * 114.17248 * 180.02562 * 9 7 2 11 11 N 1.47482 * 87.93009 * 220.13322 * 10 9 7 12 12 C 1.46905 * 110.99496 * 138.69967 * 11 10 9 13 13 C 1.50702 * 109.46459 * 170.00068 * 12 11 10 14 14 C 1.38506 * 120.43973 * 270.01765 * 13 12 11 15 15 F 1.35104 * 119.64398 * 359.96678 * 14 13 12 16 16 N 1.32050 * 120.71423 * 179.97438 * 14 13 12 17 17 C 1.31959 * 121.72204 * 0.02562 * 16 14 13 18 18 C 1.38048 * 120.81421 * 0.02562 * 17 16 14 19 19 C 1.38647 * 120.43990 * 90.00407 * 13 12 11 20 20 Cl 1.73601 * 120.78714 * 359.97438 * 19 13 12 21 21 C 1.47481 * 87.83491 * 27.00881 * 11 10 9 22 22 H 0.96992 * 119.99966 * 0.02562 * 1 2 3 23 23 H 1.09001 * 113.25098 * 312.94656 * 9 7 2 24 24 H 1.09003 * 113.47928 * 105.36774 * 10 9 7 25 25 H 1.09002 * 113.47477 * 334.90151 * 10 9 7 26 26 H 1.08996 * 109.46908 * 50.00538 * 12 11 10 27 27 H 1.08991 * 109.47384 * 290.00079 * 12 11 10 28 28 H 1.08004 * 119.59699 * 180.02562 * 17 16 14 29 29 H 1.07992 * 120.39910 * 180.27581 * 18 17 16 30 30 H 1.09006 * 113.47587 * 87.75471 * 21 11 10 31 31 H 1.08998 * 113.47570 * 218.22138 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1498 -3.7437 0.0018 11 7 1.2057 -4.3606 -0.9487 12 6 1.9222 -5.0910 -2.0029 13 6 0.9404 -5.9050 -2.8058 14 6 0.6385 -7.2051 -2.4356 15 9 1.2301 -7.7446 -1.3474 16 7 -0.2213 -7.9231 -3.1349 17 6 -0.8222 -7.4376 -4.2047 18 6 -0.5701 -6.1502 -4.6344 19 6 0.3273 -5.3624 -3.9247 20 17 0.6731 -3.7371 -4.4270 21 6 0.8528 -2.9999 -1.3948 22 1 -0.4850 0.8400 -0.0004 23 1 0.4448 -2.5305 0.7333 24 1 2.1884 -4.2505 0.9661 25 1 3.1383 -3.5659 -0.4216 26 1 2.6587 -5.7541 -1.5492 27 1 2.4270 -4.3811 -2.6579 28 1 -1.5199 -8.0551 -4.7510 29 1 -1.0690 -5.7581 -5.5082 30 1 1.4953 -2.6236 -2.1909 31 1 -0.2077 -2.8763 -1.6141 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232615352.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:28 Heat of formation + Delta-G solvation = 25.785297 kcal Electronic energy + Delta-G solvation = -18205.765558 eV Core-core repulsion = 15043.025294 eV Total energy + Delta-G solvation = -3162.740264 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.98914 -40.31746 -38.85004 -36.76538 -33.62142 -32.42261 -31.61630 -28.80980 -25.93799 -24.85193 -23.70007 -23.50003 -21.45941 -18.71237 -18.21760 -17.62075 -16.75841 -16.16538 -15.82650 -14.92335 -14.91778 -14.38854 -14.12904 -14.08006 -13.57400 -13.46549 -13.12053 -12.76290 -12.13243 -11.96816 -11.68968 -11.28317 -11.02704 -10.91324 -10.63036 -10.37474 -10.05248 -9.81833 -9.55729 -9.35896 -8.97935 -8.87884 -8.44930 -8.07505 -6.07742 -4.12350 0.72861 0.78060 1.85215 3.25726 3.32068 3.34426 3.37691 3.48400 4.35040 4.38296 4.51464 4.56502 4.99171 5.11170 5.18816 5.23549 5.48556 5.57607 5.73726 5.81868 6.05994 6.28325 6.36511 6.43885 6.64665 6.65915 7.09547 7.12351 7.43448 7.70238 7.86107 7.99419 8.34251 8.91144 9.52848 11.01886 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.028098 B = 0.005445 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.281247 B = 5141.324442 C = 5754.968881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.040 3.960 10 C -0.003 4.003 11 N -0.479 5.479 12 C 0.054 3.946 13 C -0.126 4.126 14 C 0.334 3.666 15 F -0.101 7.101 16 N -0.513 5.513 17 C 0.139 3.861 18 C -0.178 4.178 19 C 0.034 3.966 20 Cl -0.025 7.025 21 C 0.008 3.992 22 H 0.261 0.739 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.174 0.826 29 H 0.152 0.848 30 H 0.059 0.941 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 -11.554 -10.390 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.021 3.979 10 C -0.132 4.132 11 N -0.201 5.201 12 C -0.075 4.075 13 C -0.130 4.130 14 C 0.180 3.820 15 F -0.080 7.080 16 N -0.228 5.228 17 C -0.018 4.018 18 C -0.199 4.199 19 C -0.002 4.002 20 Cl 0.005 6.995 21 C -0.121 4.121 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.191 0.809 29 H 0.170 0.830 30 H 0.077 0.923 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.689 -12.638 -9.897 16.067 hybrid contribution 1.296 2.208 -0.580 2.625 sum 0.607 -10.430 -10.477 14.796 Atomic orbital electron populations 1.69979 1.05985 1.26641 1.49649 1.25009 0.94800 0.99138 0.94599 0.86582 0.80210 0.83827 0.77670 1.19690 1.21013 1.20874 1.21049 0.92766 0.90154 1.51365 0.92332 1.20115 0.94297 0.90795 0.92676 1.24031 0.95744 0.97584 0.95794 1.68974 1.27105 1.14592 1.09456 1.21586 0.93502 0.97593 0.94816 1.20493 1.01834 0.94182 0.96536 1.17713 0.91621 0.87780 0.84909 1.91639 1.80394 1.86208 1.49755 1.67035 1.09001 1.38542 1.08236 1.22438 0.95901 0.92676 0.90767 1.22107 0.99829 0.95341 1.02599 1.21095 0.96272 0.88268 0.94532 1.98443 1.93559 1.17601 1.89924 1.24194 1.00342 0.86170 1.01372 0.92910 0.91777 0.91676 0.92550 0.89980 0.91707 0.80866 0.83022 0.92283 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 13.26 55.43 0.74 -24.58 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.52 -13.80 8.83 -34.44 -0.30 -14.11 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.04 1.00 3.76 -91.24 -0.34 0.66 16 10 C 0.00 -0.07 7.25 -7.54 -0.05 -0.12 16 11 N -0.48 -9.65 6.32 -246.09 -1.55 -11.20 16 12 C 0.05 0.91 4.49 -4.97 -0.02 0.89 16 13 C -0.13 -1.96 5.49 -104.37 -0.57 -2.54 16 14 C 0.33 5.21 8.36 -17.36 -0.15 5.07 16 15 F -0.10 -1.64 16.51 2.25 0.04 -1.61 16 16 N -0.51 -7.29 10.37 -13.61 -0.14 -7.43 16 17 C 0.14 1.48 11.18 -17.57 -0.20 1.29 16 18 C -0.18 -1.94 9.93 -39.40 -0.39 -2.33 16 19 C 0.03 0.47 6.36 -39.18 -0.25 0.22 16 20 Cl -0.02 -0.36 25.21 -51.86 -1.31 -1.67 16 21 C 0.01 0.18 6.03 -7.55 -0.05 0.13 16 22 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.06 1.76 8.11 -51.93 -0.42 1.34 16 24 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.06 1.13 7.87 -51.93 -0.41 0.72 16 26 H 0.08 1.29 7.59 -51.93 -0.39 0.90 16 27 H 0.06 1.08 6.18 -51.93 -0.32 0.76 16 28 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 29 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.06 1.31 6.36 -51.93 -0.33 0.98 16 31 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 284.30 15.07 4.28 4.28 Total: -1.00 -29.27 284.30 -8.50 -37.77 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -3.11 Total: -2.28 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.42 Total: -9.10 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -0.96 Total: -43.21 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.31 Total: -1.67 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.27 -8.50 -37.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232615352.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.553 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds