Wall clock time and date at job start Mon Mar 30 2020 01:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99699 * 2 1 4 4 H 1.48501 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47185 * 299.99816 * 3 2 1 6 6 H 1.48498 * 109.47359 * 59.99949 * 3 2 1 7 7 C 1.37866 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00249 * 0.02562 * 7 2 1 10 10 C 1.53513 * 114.17248 * 180.02562 * 9 7 2 11 11 N 1.47482 * 87.93009 * 220.13322 * 10 9 7 12 12 C 1.46905 * 110.99496 * 138.69967 * 11 10 9 13 13 C 1.50702 * 109.46459 * 170.00068 * 12 11 10 14 14 C 1.38506 * 120.43973 * 270.01765 * 13 12 11 15 15 F 1.35104 * 119.64398 * 359.96678 * 14 13 12 16 16 N 1.32050 * 120.71423 * 179.97438 * 14 13 12 17 17 C 1.31959 * 121.72204 * 0.02562 * 16 14 13 18 18 C 1.38048 * 120.81421 * 0.02562 * 17 16 14 19 19 C 1.38647 * 120.43990 * 90.00407 * 13 12 11 20 20 Cl 1.73601 * 120.78714 * 359.97438 * 19 13 12 21 21 C 1.47481 * 87.83491 * 27.00881 * 11 10 9 22 22 H 0.96992 * 119.99966 * 0.02562 * 1 2 3 23 23 H 1.09001 * 113.25098 * 312.94656 * 9 7 2 24 24 H 1.09003 * 113.47928 * 105.36774 * 10 9 7 25 25 H 1.09002 * 113.47477 * 334.90151 * 10 9 7 26 26 H 1.08996 * 109.46908 * 50.00538 * 12 11 10 27 27 H 1.08991 * 109.47384 * 290.00079 * 12 11 10 28 28 H 1.08004 * 119.59699 * 180.02562 * 17 16 14 29 29 H 1.07992 * 120.39910 * 180.27581 * 18 17 16 30 30 H 1.09006 * 113.47587 * 87.75471 * 21 11 10 31 31 H 1.08998 * 113.47570 * 218.22138 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1498 -3.7437 0.0018 11 7 1.2057 -4.3606 -0.9487 12 6 1.9222 -5.0910 -2.0029 13 6 0.9404 -5.9050 -2.8058 14 6 0.6385 -7.2051 -2.4356 15 9 1.2301 -7.7446 -1.3474 16 7 -0.2213 -7.9231 -3.1349 17 6 -0.8222 -7.4376 -4.2047 18 6 -0.5701 -6.1502 -4.6344 19 6 0.3273 -5.3624 -3.9247 20 17 0.6731 -3.7371 -4.4270 21 6 0.8528 -2.9999 -1.3948 22 1 -0.4850 0.8400 -0.0004 23 1 0.4448 -2.5305 0.7333 24 1 2.1884 -4.2505 0.9661 25 1 3.1383 -3.5659 -0.4216 26 1 2.6587 -5.7541 -1.5492 27 1 2.4270 -4.3811 -2.6579 28 1 -1.5199 -8.0551 -4.7510 29 1 -1.0690 -5.7581 -5.5082 30 1 1.4953 -2.6236 -2.1909 31 1 -0.2077 -2.8763 -1.6141 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232615352.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:28 Heat of formation + Delta-G solvation = 5.953788 kcal Electronic energy + Delta-G solvation = -18206.625517 eV Core-core repulsion = 15043.025294 eV Total energy + Delta-G solvation = -3163.600223 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.16073 -41.44843 -40.45270 -37.86696 -35.14336 -34.12638 -32.68677 -30.36256 -27.62246 -26.59805 -25.09027 -24.69443 -22.83830 -20.53901 -19.29856 -18.75966 -18.63928 -17.36506 -17.01023 -16.68043 -16.29258 -15.91330 -15.76013 -15.22774 -14.78395 -14.62275 -14.52873 -14.02753 -13.87567 -13.32212 -13.18660 -13.03064 -12.88278 -12.38746 -12.16036 -12.06196 -11.75617 -11.28780 -10.97239 -10.87186 -10.62537 -10.44775 -10.06770 -9.73177 -8.15133 -6.26302 -0.29068 -0.26191 0.77564 1.41161 1.43554 1.54720 2.30699 2.42417 2.45627 3.14175 3.22762 3.43282 3.48287 3.58660 4.10015 4.11089 4.24529 4.36719 4.45488 4.53817 4.65049 4.66984 4.78417 4.82942 4.93131 5.23316 5.36401 5.41894 5.62717 5.84110 6.25478 6.31669 6.45115 6.83188 7.42317 8.94993 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.028098 B = 0.005445 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.281247 B = 5141.324442 C = 5754.968881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.018 3.982 10 C 0.011 3.989 11 N -0.482 5.482 12 C 0.058 3.942 13 C -0.147 4.147 14 C 0.316 3.684 15 F -0.113 7.113 16 N -0.529 5.529 17 C 0.152 3.848 18 C -0.162 4.162 19 C 0.022 3.978 20 Cl -0.036 7.036 21 C 0.030 3.970 22 H 0.262 0.738 23 H 0.028 0.972 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.223 0.777 29 H 0.189 0.811 30 H 0.060 0.940 31 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.194 -12.239 -12.043 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.001 4.001 10 C -0.118 4.118 11 N -0.204 5.204 12 C -0.071 4.071 13 C -0.152 4.152 14 C 0.163 3.837 15 F -0.092 7.092 16 N -0.244 5.244 17 C -0.004 4.004 18 C -0.182 4.182 19 C -0.013 4.013 20 Cl -0.007 7.007 21 C -0.100 4.100 22 H 0.071 0.929 23 H 0.046 0.954 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.239 0.761 29 H 0.206 0.794 30 H 0.078 0.922 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.554 -13.339 -11.544 17.649 hybrid contribution 1.183 2.318 -0.134 2.606 sum 0.629 -11.021 -11.678 16.070 Atomic orbital electron populations 1.70105 1.07537 1.27482 1.50931 1.25800 0.95550 1.02606 0.94337 0.85546 0.79260 0.79512 0.77603 1.18708 1.20637 1.20667 1.21368 0.93024 0.91221 1.50886 0.92089 1.20069 0.94497 0.92115 0.93397 1.23865 0.95582 0.95576 0.96732 1.68886 1.27707 1.13412 1.10403 1.21525 0.93975 0.97522 0.94091 1.20354 1.02882 0.94352 0.97584 1.17822 0.92573 0.88043 0.85270 1.91598 1.80788 1.86356 1.50462 1.67133 1.09103 1.38849 1.09315 1.23320 0.94896 0.92929 0.89302 1.22560 0.98029 0.94860 1.02753 1.21330 0.97114 0.88106 0.94760 1.98440 1.93750 1.18601 1.89892 1.23832 0.98900 0.87475 0.99747 0.92882 0.95400 0.90728 0.91411 0.88981 0.91568 0.76083 0.79416 0.92166 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.82 13.26 21.44 0.28 -53.54 16 2 C 0.02 0.90 5.46 84.65 0.46 1.36 16 3 Si 0.96 42.82 29.54 68.60 2.03 44.84 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.53 -28.51 8.83 25.60 0.23 -28.29 16 8 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 9 C 0.02 0.93 3.76 -11.20 -0.04 0.89 16 10 C 0.01 0.45 7.25 83.57 0.61 1.06 16 11 N -0.48 -19.47 6.32 -932.49 -5.89 -25.36 16 12 C 0.06 1.91 4.49 85.56 0.38 2.30 16 13 C -0.15 -4.46 5.49 -19.70 -0.11 -4.57 16 14 C 0.32 9.57 8.36 84.72 0.71 10.28 16 15 F -0.11 -3.65 16.51 44.97 0.74 -2.91 16 16 N -0.53 -13.84 10.37 -196.97 -2.04 -15.89 16 17 C 0.15 2.67 11.18 84.63 0.95 3.62 16 18 C -0.16 -2.96 9.93 22.38 0.22 -2.74 16 19 C 0.02 0.58 6.36 22.53 0.14 0.73 16 20 Cl -0.04 -1.02 25.21 -2.72 -0.07 -1.09 16 21 C 0.03 1.35 6.03 83.57 0.50 1.85 16 22 H 0.26 14.48 8.31 -92.71 -0.77 13.70 16 23 H 0.03 1.60 8.11 -2.39 -0.02 1.58 16 24 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 25 H 0.07 2.66 7.87 -2.39 -0.02 2.64 16 26 H 0.09 2.84 7.59 -2.39 -0.02 2.82 16 27 H 0.07 2.18 6.18 -2.39 -0.01 2.16 16 28 H 0.22 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.06 2.70 6.36 -2.38 -0.02 2.69 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -64.28 284.30 0.26 -64.02 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 1.16 Total: 3.44 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 4.05 Total: -13.52 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -7.65 Total: -94.78 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.74 Total: -2.91 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.07 Total: -1.09 kcal Total: -64.28 0.26 -64.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232615352.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.972 kcal (2) G-P(sol) polarization free energy of solvation -64.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds