Wall clock time and date at job start Mon Mar 30 2020 00:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00117 * 2 1 4 4 H 1.48498 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47060 * 300.00376 * 3 2 1 6 6 H 1.48496 * 109.46952 * 60.00353 * 3 2 1 7 7 C 1.37878 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00015 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00026 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47061 * 299.99876 * 9 7 2 11 11 C 1.52997 * 109.47130 * 60.00214 * 9 7 2 12 12 Cl 1.80304 * 109.46835 * 184.99892 * 11 9 7 13 13 O 1.42903 * 109.46816 * 179.97438 * 9 7 2 14 14 C 1.35671 * 116.99732 * 146.59818 * 13 9 7 15 15 C 1.38934 * 120.57904 * 356.70258 * 14 13 9 16 16 N 1.31636 * 120.79349 * 179.97438 * 15 14 13 17 17 C 1.31898 * 122.14639 * 0.02562 * 16 15 14 18 18 C 1.37970 * 121.07685 * 0.02562 * 17 16 15 19 19 C 1.39958 * 119.06466 * 359.97438 * 18 17 16 20 20 C 1.47845 * 120.96013 * 179.97438 * 19 18 17 21 21 N 1.34781 * 119.99594 * 0.02562 * 20 19 18 22 22 O 1.21547 * 119.99913 * 180.02562 * 20 19 18 23 23 H 0.96997 * 120.00257 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47054 * 304.99708 * 11 9 7 25 25 H 1.08993 * 109.47177 * 65.00238 * 11 9 7 26 26 H 1.08002 * 119.60691 * 359.97438 * 15 14 13 27 27 H 1.07997 * 119.46370 * 179.97438 * 17 16 15 28 28 H 1.08000 * 120.47017 * 179.97438 * 18 17 16 29 29 H 0.96997 * 120.00329 * 0.02562 * 21 20 19 30 30 H 0.96998 * 119.99306 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 6 0.3708 -2.5800 -1.2495 12 17 -0.6396 -4.0715 -1.1771 13 8 2.1795 -3.5853 -0.0017 14 6 1.8132 -4.7096 0.6635 15 6 0.6160 -4.7562 1.3670 16 7 0.2563 -5.8449 2.0135 17 6 1.0030 -6.9321 2.0273 18 6 2.2083 -6.9767 1.3574 19 6 2.6375 -5.8454 0.6540 20 6 3.9221 -5.8469 -0.0779 21 7 4.6983 -6.9487 -0.0744 22 8 4.2781 -4.8545 -0.6827 23 1 -0.4850 0.8400 0.0004 24 1 -0.2766 -1.7043 -1.2949 25 1 1.0022 -2.6116 -2.1374 26 1 -0.0272 -3.8887 1.3836 27 1 0.6658 -7.8012 2.5724 28 1 2.8122 -7.8719 1.3755 29 1 4.4140 -7.7408 0.4079 30 1 5.5409 -6.9497 -0.5549 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234008943.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:51 Heat of formation + Delta-G solvation = -49.331014 kcal Electronic energy + Delta-G solvation = -18629.138238 eV Core-core repulsion = 15450.767897 eV Total energy + Delta-G solvation = -3178.370341 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.44456 -38.53564 -37.64490 -34.94699 -33.68369 -33.54510 -31.77265 -30.19449 -29.05866 -25.38035 -24.64503 -23.29937 -21.14413 -20.56791 -18.32693 -17.23330 -16.82207 -16.69028 -15.52085 -15.14215 -15.01943 -14.68820 -14.29952 -13.99365 -13.47925 -13.36565 -12.98579 -12.72674 -12.18558 -11.98232 -11.57530 -11.24137 -11.02114 -10.89374 -10.35130 -9.98696 -9.84815 -9.52492 -9.51102 -9.41671 -9.37560 -8.98875 -8.67267 -7.70015 -6.45823 -4.52820 1.06332 1.59293 3.11481 3.21638 3.26796 3.28189 3.33385 3.62304 3.87611 4.21144 4.27418 4.84388 4.90751 4.96081 5.01872 5.14459 5.60063 5.81847 6.04015 6.06821 6.18014 6.26213 6.67644 6.85476 6.91931 7.06547 7.45223 7.53540 7.69636 8.13260 8.29173 8.51027 8.64285 9.14863 10.61643 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.007153 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.710918 B = 3913.494636 C = 4597.744653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.518 4.518 8 H 0.080 0.920 9 C 0.198 3.802 10 H 0.051 0.949 11 C -0.036 4.036 12 Cl -0.242 7.242 13 O -0.266 6.266 14 C 0.168 3.832 15 C 0.032 3.968 16 N -0.433 5.433 17 C 0.025 3.975 18 C -0.108 4.108 19 C -0.161 4.161 20 C 0.564 3.436 21 N -0.859 5.859 22 O -0.506 6.506 23 H 0.272 0.728 24 H 0.138 0.862 25 H 0.078 0.922 26 H 0.174 0.826 27 H 0.153 0.847 28 H 0.134 0.866 29 H 0.396 0.604 30 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 -12.074 1.735 12.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.556 4.556 8 H 0.099 0.901 9 C 0.143 3.857 10 H 0.069 0.931 11 C -0.099 4.099 12 Cl -0.216 7.216 13 O -0.175 6.175 14 C 0.114 3.886 15 C -0.130 4.130 16 N -0.144 5.144 17 C -0.129 4.129 18 C -0.129 4.129 19 C -0.172 4.172 20 C 0.349 3.651 21 N -0.425 5.425 22 O -0.379 6.379 23 H 0.082 0.918 24 H 0.155 0.845 25 H 0.097 0.903 26 H 0.190 0.810 27 H 0.170 0.830 28 H 0.151 0.849 29 H 0.225 0.775 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.783 -11.229 1.702 11.693 hybrid contribution 1.051 0.313 -0.411 1.171 sum 3.833 -10.916 1.291 11.641 Atomic orbital electron populations 1.69791 1.05984 1.28125 1.48739 1.24983 0.95208 0.99881 0.93850 0.86096 0.80122 0.81445 0.77959 1.19179 1.20462 1.20458 1.21050 0.94615 0.87463 1.52457 0.90144 1.20746 0.87525 0.83319 0.94118 0.93129 1.25825 0.95348 0.86707 1.01994 1.98648 1.75806 1.48245 1.98926 1.86409 1.45293 1.20413 1.65341 1.20274 0.91918 0.87702 0.88713 1.23348 0.95320 0.97950 0.96381 1.67361 1.32585 0.99192 1.15247 1.22345 0.92222 0.97034 1.01329 1.21985 0.97627 0.96841 0.96434 1.19594 0.97291 0.94094 1.06271 1.17997 0.83706 0.83012 0.80378 1.43706 1.25093 1.16130 1.57560 1.90920 1.72401 1.32507 1.42098 0.91754 0.84477 0.90319 0.80958 0.82961 0.84855 0.77537 0.76768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.00 11.29 55.43 0.63 -22.37 16 2 C 0.06 1.64 5.29 -17.82 -0.09 1.54 16 3 Si 0.92 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.52 -13.72 8.89 -34.44 -0.31 -14.02 16 8 H 0.08 2.21 7.81 -52.48 -0.41 1.80 16 9 C 0.20 4.84 2.19 -27.88 -0.06 4.78 16 10 H 0.05 1.27 5.41 -51.93 -0.28 0.99 16 11 C -0.04 -0.83 6.17 37.16 0.23 -0.61 16 12 Cl -0.24 -5.05 25.67 -51.86 -1.33 -6.38 16 13 O -0.27 -6.40 7.96 -39.90 -0.32 -6.71 16 14 C 0.17 3.49 6.00 -38.53 -0.23 3.26 16 15 C 0.03 0.63 8.27 -17.38 -0.14 0.49 16 16 N -0.43 -7.76 10.32 -13.17 -0.14 -7.89 16 17 C 0.02 0.35 11.16 -17.62 -0.20 0.15 16 18 C -0.11 -1.43 9.61 -39.04 -0.38 -1.81 16 19 C -0.16 -2.82 5.92 -104.53 -0.62 -3.44 16 20 C 0.56 9.72 8.06 -12.33 -0.10 9.62 16 21 N -0.86 -9.40 8.83 30.53 0.27 -9.13 16 22 O -0.51 -11.25 16.14 -15.86 -0.26 -11.50 16 23 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 24 H 0.14 3.34 5.95 -51.93 -0.31 3.03 16 25 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 26 H 0.17 3.64 5.14 -52.49 -0.27 3.37 16 27 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.13 1.11 6.53 -52.49 -0.34 0.77 16 29 H 0.40 2.92 6.97 -40.82 -0.28 2.64 16 30 H 0.40 3.75 8.93 -40.82 -0.36 3.38 16 LS Contribution 273.91 15.07 4.13 4.13 Total: -1.00 -30.55 273.91 -6.18 -36.73 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -2.24 Total: 8.03 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.90 Total: -0.04 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.76 Total: -39.39 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.57 Total: -18.22 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -5.05 SS G_CDS: -1.33 Total: -6.38 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.55 -6.18 -36.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234008943.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.604 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds