Wall clock time and date at job start Mon Mar 30 2020 00:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00117 * 2 1 4 4 H 1.48498 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47060 * 300.00376 * 3 2 1 6 6 H 1.48496 * 109.46952 * 60.00353 * 3 2 1 7 7 C 1.37878 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00015 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00026 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47061 * 299.99876 * 9 7 2 11 11 C 1.52997 * 109.47130 * 60.00214 * 9 7 2 12 12 Cl 1.80304 * 109.46835 * 184.99892 * 11 9 7 13 13 O 1.42903 * 109.46816 * 179.97438 * 9 7 2 14 14 C 1.35671 * 116.99732 * 146.59818 * 13 9 7 15 15 C 1.38934 * 120.57904 * 356.70258 * 14 13 9 16 16 N 1.31636 * 120.79349 * 179.97438 * 15 14 13 17 17 C 1.31898 * 122.14639 * 0.02562 * 16 15 14 18 18 C 1.37970 * 121.07685 * 0.02562 * 17 16 15 19 19 C 1.39958 * 119.06466 * 359.97438 * 18 17 16 20 20 C 1.47845 * 120.96013 * 179.97438 * 19 18 17 21 21 N 1.34781 * 119.99594 * 0.02562 * 20 19 18 22 22 O 1.21547 * 119.99913 * 180.02562 * 20 19 18 23 23 H 0.96997 * 120.00257 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47054 * 304.99708 * 11 9 7 25 25 H 1.08993 * 109.47177 * 65.00238 * 11 9 7 26 26 H 1.08002 * 119.60691 * 359.97438 * 15 14 13 27 27 H 1.07997 * 119.46370 * 179.97438 * 17 16 15 28 28 H 1.08000 * 120.47017 * 179.97438 * 18 17 16 29 29 H 0.96997 * 120.00329 * 0.02562 * 21 20 19 30 30 H 0.96998 * 119.99306 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 6 0.3708 -2.5800 -1.2495 12 17 -0.6396 -4.0715 -1.1771 13 8 2.1795 -3.5853 -0.0017 14 6 1.8132 -4.7096 0.6635 15 6 0.6160 -4.7562 1.3670 16 7 0.2563 -5.8449 2.0135 17 6 1.0030 -6.9321 2.0273 18 6 2.2083 -6.9767 1.3574 19 6 2.6375 -5.8454 0.6540 20 6 3.9221 -5.8469 -0.0779 21 7 4.6983 -6.9487 -0.0744 22 8 4.2781 -4.8545 -0.6827 23 1 -0.4850 0.8400 0.0004 24 1 -0.2766 -1.7043 -1.2949 25 1 1.0022 -2.6116 -2.1374 26 1 -0.0272 -3.8887 1.3836 27 1 0.6658 -7.8012 2.5724 28 1 2.8122 -7.8719 1.3755 29 1 4.4140 -7.7408 0.4079 30 1 5.5409 -6.9497 -0.5549 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234008943.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:51 Heat of formation + Delta-G solvation = -72.127571 kcal Electronic energy + Delta-G solvation = -18630.126771 eV Core-core repulsion = 15450.767897 eV Total energy + Delta-G solvation = -3179.358874 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.83651 -39.94138 -39.17675 -36.70432 -35.45334 -34.94825 -33.08654 -31.74183 -30.70843 -27.34098 -25.98939 -24.79810 -22.69650 -21.96850 -19.65333 -18.92030 -18.33843 -18.09916 -17.05031 -16.64524 -16.42881 -16.34748 -15.62149 -15.43361 -15.16477 -14.81515 -14.49788 -14.31988 -13.88718 -13.60407 -13.13452 -13.01896 -12.84121 -12.62377 -12.15412 -11.65139 -11.37810 -11.29307 -11.15470 -10.78176 -10.70683 -10.58399 -10.29639 -9.19559 -8.41281 -6.56675 -0.25278 0.26107 1.34769 1.40712 1.51258 1.54584 1.94733 2.21630 2.46479 2.55358 2.90211 2.93706 3.51429 3.78090 3.83693 3.94270 4.21725 4.27843 4.40282 4.56085 4.74672 4.83731 5.00587 5.17930 5.50293 5.61862 5.77277 5.91958 6.35960 6.47280 6.70449 6.97776 7.15284 7.37384 8.66016 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.007153 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.710918 B = 3913.494636 C = 4597.744653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.030 3.970 3 Si 0.977 3.023 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.205 3.795 10 H 0.036 0.964 11 C -0.025 4.025 12 Cl -0.221 7.221 13 O -0.293 6.293 14 C 0.125 3.875 15 C 0.013 3.987 16 N -0.450 5.450 17 C 0.036 3.964 18 C -0.080 4.080 19 C -0.168 4.168 20 C 0.560 3.440 21 N -0.822 5.822 22 O -0.568 6.568 23 H 0.278 0.722 24 H 0.123 0.877 25 H 0.071 0.929 26 H 0.147 0.853 27 H 0.203 0.797 28 H 0.197 0.803 29 H 0.418 0.582 30 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 -14.830 2.553 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.172 4.172 3 Si 0.801 3.199 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.150 3.850 10 H 0.053 0.947 11 C -0.088 4.088 12 Cl -0.195 7.195 13 O -0.203 6.203 14 C 0.073 3.927 15 C -0.146 4.146 16 N -0.161 5.161 17 C -0.120 4.120 18 C -0.100 4.100 19 C -0.180 4.180 20 C 0.345 3.655 21 N -0.389 5.389 22 O -0.446 6.446 23 H 0.088 0.912 24 H 0.141 0.859 25 H 0.090 0.910 26 H 0.164 0.836 27 H 0.220 0.780 28 H 0.214 0.786 29 H 0.251 0.749 30 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.438 -14.044 2.538 14.680 hybrid contribution 0.856 0.838 -0.564 1.324 sum 4.294 -13.206 1.974 14.026 Atomic orbital electron populations 1.69861 1.06883 1.29124 1.48455 1.25694 0.96006 1.02482 0.93000 0.85205 0.78462 0.77738 0.78543 1.19803 1.19325 1.19463 1.21192 0.93901 0.89362 1.54058 0.92234 1.20433 0.87434 0.83372 0.93791 0.94655 1.25434 0.95057 0.87076 1.01184 1.98634 1.75071 1.46889 1.98947 1.86345 1.45464 1.21405 1.67111 1.20628 0.93602 0.87977 0.90457 1.22884 0.95228 0.98316 0.98180 1.67368 1.33774 0.99687 1.15270 1.23285 0.91754 0.96896 1.00018 1.22619 0.97377 0.96971 0.92986 1.19997 0.97127 0.94339 1.06510 1.18119 0.84028 0.83547 0.79791 1.43361 1.24393 1.14946 1.56247 1.90903 1.73727 1.35156 1.44859 0.91229 0.85908 0.90999 0.83579 0.77992 0.78649 0.74877 0.75344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.25 11.29 21.45 0.24 -48.01 16 2 C 0.03 1.57 5.29 84.66 0.45 2.02 16 3 Si 0.98 42.18 29.54 68.60 2.03 44.21 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.55 -30.67 8.89 25.60 0.23 -30.44 16 8 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.20 10.68 2.19 29.85 0.07 10.75 16 10 H 0.04 1.93 5.41 -2.39 -0.01 1.92 16 11 C -0.02 -1.20 6.17 71.98 0.44 -0.75 16 12 Cl -0.22 -9.49 25.67 -2.72 -0.07 -9.56 16 13 O -0.29 -14.92 7.96 -69.62 -0.55 -15.48 16 14 C 0.13 5.33 6.00 22.95 0.14 5.47 16 15 C 0.01 0.53 8.27 84.89 0.70 1.23 16 16 N -0.45 -15.46 10.32 -195.59 -2.02 -17.48 16 17 C 0.04 0.87 11.16 84.62 0.94 1.81 16 18 C -0.08 -1.72 9.61 22.62 0.22 -1.51 16 19 C -0.17 -5.61 5.92 -19.81 -0.12 -5.73 16 20 C 0.56 18.54 8.06 86.79 0.70 19.24 16 21 N -0.82 -14.99 8.83 -175.60 -1.55 -16.54 16 22 O -0.57 -25.84 16.14 16.40 0.26 -25.57 16 23 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 24 H 0.12 6.29 5.95 -2.39 -0.01 6.27 16 25 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 26 H 0.15 6.61 5.14 -2.91 -0.01 6.60 16 27 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 28 H 0.20 1.70 6.53 -2.91 -0.02 1.68 16 29 H 0.42 3.78 6.97 -92.71 -0.65 3.13 16 30 H 0.41 6.36 8.93 -92.71 -0.83 5.54 16 Total: -1.00 -72.36 273.91 1.86 -70.50 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -0.25 Total: 15.85 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 3.77 Total: 2.09 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -3.33 Total: -82.03 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.29 Total: -41.05 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 17 Polarization: -9.49 SS G_CDS: -0.07 Total: -9.56 kcal Total: -72.36 1.86 -70.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234008943.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.628 kcal (2) G-P(sol) polarization free energy of solvation -72.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds