Wall clock time and date at job start Mon Mar 30 2020 01:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99855 * 2 1 4 4 H 1.48504 * 109.47203 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47377 * 300.00304 * 3 2 1 6 6 H 1.48504 * 109.47000 * 60.00326 * 3 2 1 7 7 C 1.37874 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99953 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.53516 * 114.17377 * 180.02562 * 9 7 2 11 11 N 1.47480 * 87.93484 * 220.13740 * 10 9 7 12 12 C 1.46900 * 110.99985 * 138.69831 * 11 10 9 13 13 C 1.50707 * 109.47094 * 170.00113 * 12 11 10 14 14 C 1.38191 * 120.41104 * 259.72560 * 13 12 11 15 15 N 1.31867 * 120.82632 * 180.27144 * 14 13 12 16 16 C 1.31904 * 121.78141 * 0.02562 * 15 14 13 17 17 C 1.38350 * 120.73948 * 359.97438 * 16 15 14 18 18 F 1.35100 * 120.44364 * 180.02562 * 17 16 15 19 19 C 1.38725 * 120.41318 * 80.00006 * 13 12 11 20 20 Cl 1.73598 * 120.81222 * 359.74826 * 19 13 12 21 21 C 1.47483 * 87.83615 * 27.00748 * 11 10 9 22 22 H 0.97000 * 120.00263 * 359.97438 * 1 2 3 23 23 H 1.09003 * 113.25577 * 312.94991 * 9 7 2 24 24 H 1.08998 * 113.47778 * 105.36604 * 10 9 7 25 25 H 1.09006 * 113.52740 * 334.91017 * 10 9 7 26 26 H 1.08999 * 109.47123 * 50.00465 * 12 11 10 27 27 H 1.08996 * 109.47236 * 290.00069 * 12 11 10 28 28 H 1.07994 * 119.58582 * 0.25015 * 14 13 12 29 29 H 1.07991 * 119.62444 * 179.97438 * 16 15 14 30 30 H 1.09004 * 113.47631 * 87.75560 * 21 11 10 31 31 H 1.08997 * 113.47934 * 218.22322 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.1497 -3.7438 -0.0005 11 7 1.2050 -4.3603 -0.9506 12 6 1.9206 -5.0902 -2.0057 13 6 0.9383 -5.9039 -2.8084 14 6 0.7944 -7.2580 -2.5729 15 7 -0.0587 -7.9788 -3.2740 16 6 -0.8047 -7.4450 -4.2218 17 6 -0.7167 -6.0959 -4.5154 18 9 -1.4839 -5.5552 -5.4871 19 6 0.1715 -5.3040 -3.7966 20 17 0.3183 -3.6064 -4.1283 21 6 0.8517 -2.9994 -1.3959 22 1 -0.4850 0.8400 0.0004 23 1 0.4452 -2.5309 0.7328 24 1 2.1891 -4.2509 0.9635 25 1 3.1383 -3.5668 -0.4243 26 1 2.6575 -5.7535 -1.5529 27 1 2.4250 -4.3799 -2.6608 28 1 1.3883 -7.7318 -1.8054 29 1 -1.4918 -8.0681 -4.7748 30 1 1.4936 -2.6227 -2.1923 31 1 -0.2089 -2.8756 -1.6144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235490681.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:15 Heat of formation + Delta-G solvation = 23.540747 kcal Electronic energy + Delta-G solvation = -18133.052914 eV Core-core repulsion = 14970.215319 eV Total energy + Delta-G solvation = -3162.837595 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.11144 -40.39124 -38.84691 -36.70373 -33.60615 -32.38573 -31.38284 -28.88716 -25.97148 -24.92554 -23.85627 -23.42334 -21.43107 -18.77217 -17.69699 -17.64567 -17.04772 -16.61595 -16.07265 -15.06709 -14.67081 -14.41541 -14.13273 -13.95124 -13.67961 -13.47804 -12.97685 -12.84508 -12.17242 -11.99761 -11.73782 -11.35421 -11.04051 -10.80604 -10.66365 -10.36759 -10.03730 -9.76485 -9.52929 -9.23468 -8.95350 -8.93586 -8.44524 -8.11267 -6.08798 -4.13525 0.69942 0.77282 1.91586 3.25124 3.33821 3.36372 3.37789 3.72991 4.22573 4.36598 4.42335 4.54199 4.89953 4.99376 5.20976 5.24075 5.40564 5.54148 5.72001 5.83797 6.02139 6.25562 6.33491 6.40862 6.60842 6.63479 7.06145 7.12535 7.58905 7.68375 7.83909 7.96865 8.32571 8.89874 9.51741 11.00757 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.029658 B = 0.005357 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.860930 B = 5225.169920 C = 5836.234316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.039 3.961 10 C -0.004 4.004 11 N -0.479 5.479 12 C 0.053 3.947 13 C -0.073 4.073 14 C 0.111 3.889 15 N -0.456 5.456 16 C 0.075 3.925 17 C 0.055 3.945 18 F -0.121 7.121 19 C -0.030 4.030 20 Cl -0.013 7.013 21 C 0.007 3.993 22 H 0.261 0.739 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.171 0.829 29 H 0.173 0.827 30 H 0.059 0.941 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 -12.440 -8.151 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.020 3.980 10 C -0.132 4.132 11 N -0.202 5.202 12 C -0.076 4.076 13 C -0.076 4.076 14 C -0.047 4.047 15 N -0.163 5.163 16 C -0.083 4.083 17 C 0.032 3.968 18 F -0.099 7.099 19 C -0.066 4.066 20 Cl 0.016 6.984 21 C -0.121 4.121 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.188 0.812 29 H 0.190 0.810 30 H 0.077 0.923 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.395 -13.527 -7.831 15.636 hybrid contribution 0.922 2.584 -0.896 2.886 sum 1.317 -10.944 -8.728 14.060 Atomic orbital electron populations 1.69977 1.05988 1.26674 1.49548 1.25012 0.94799 0.99156 0.94590 0.86586 0.80198 0.83844 0.77691 1.19684 1.21017 1.20855 1.21042 0.92748 0.90168 1.51469 0.92342 1.20134 0.94284 0.90812 0.92790 1.24036 0.95739 0.97679 0.95742 1.68984 1.26963 1.14725 1.09479 1.21656 0.93552 0.97703 0.94711 1.20832 0.97326 0.95371 0.94108 1.22775 0.95181 0.89478 0.97225 1.67719 1.04892 1.38785 1.04927 1.22855 0.99019 0.90175 0.96272 1.18619 0.94196 0.93071 0.90907 1.91549 1.72778 1.86150 1.59428 1.21533 0.98496 0.88382 0.98160 1.98462 1.96501 1.09147 1.94260 1.24283 1.00529 0.86113 1.01199 0.92887 0.91800 0.91676 0.92547 0.89770 0.92002 0.81183 0.81029 0.92307 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.27 13.26 55.43 0.74 -24.54 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -13.69 8.83 -34.44 -0.30 -13.99 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.04 0.95 3.76 -91.24 -0.34 0.60 16 10 C 0.00 -0.07 7.25 -7.54 -0.05 -0.13 16 11 N -0.48 -9.09 6.32 -246.06 -1.55 -10.65 16 12 C 0.05 0.81 4.69 -4.97 -0.02 0.78 16 13 C -0.07 -1.05 5.48 -104.46 -0.57 -1.62 16 14 C 0.11 1.40 10.83 -17.55 -0.19 1.21 16 15 N -0.46 -5.83 10.36 -13.22 -0.14 -5.97 16 16 C 0.08 0.89 11.17 -17.48 -0.20 0.70 16 17 C 0.05 0.75 7.32 -39.25 -0.29 0.46 16 18 F -0.12 -1.66 16.94 2.25 0.04 -1.62 16 19 C -0.03 -0.45 6.37 -39.11 -0.25 -0.70 16 20 Cl -0.01 -0.22 23.62 -51.86 -1.22 -1.44 16 21 C 0.01 0.16 5.17 -7.54 -0.04 0.12 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.06 1.72 8.11 -51.93 -0.42 1.30 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 26 H 0.08 1.07 7.95 -51.93 -0.41 0.66 16 27 H 0.06 0.98 6.62 -51.93 -0.34 0.64 16 28 H 0.17 1.69 8.04 -52.49 -0.42 1.27 16 29 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.06 1.30 6.18 -51.93 -0.32 0.98 16 31 H 0.06 1.54 7.71 -51.93 -0.40 1.14 16 LS Contribution 282.49 15.07 4.26 4.26 Total: -1.00 -28.53 282.49 -8.38 -36.91 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -3.12 Total: -1.88 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.36 Total: -10.83 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: -0.96 Total: -41.15 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.22 Total: -1.44 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.53 -8.38 -36.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235490681.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.450 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds