Wall clock time and date at job start Mon Mar 30 2020 01:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99855 * 2 1 4 4 H 1.48504 * 109.47203 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47377 * 300.00304 * 3 2 1 6 6 H 1.48504 * 109.47000 * 60.00326 * 3 2 1 7 7 C 1.37874 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99953 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.53516 * 114.17377 * 180.02562 * 9 7 2 11 11 N 1.47480 * 87.93484 * 220.13740 * 10 9 7 12 12 C 1.46900 * 110.99985 * 138.69831 * 11 10 9 13 13 C 1.50707 * 109.47094 * 170.00113 * 12 11 10 14 14 C 1.38191 * 120.41104 * 259.72560 * 13 12 11 15 15 N 1.31867 * 120.82632 * 180.27144 * 14 13 12 16 16 C 1.31904 * 121.78141 * 0.02562 * 15 14 13 17 17 C 1.38350 * 120.73948 * 359.97438 * 16 15 14 18 18 F 1.35100 * 120.44364 * 180.02562 * 17 16 15 19 19 C 1.38725 * 120.41318 * 80.00006 * 13 12 11 20 20 Cl 1.73598 * 120.81222 * 359.74826 * 19 13 12 21 21 C 1.47483 * 87.83615 * 27.00748 * 11 10 9 22 22 H 0.97000 * 120.00263 * 359.97438 * 1 2 3 23 23 H 1.09003 * 113.25577 * 312.94991 * 9 7 2 24 24 H 1.08998 * 113.47778 * 105.36604 * 10 9 7 25 25 H 1.09006 * 113.52740 * 334.91017 * 10 9 7 26 26 H 1.08999 * 109.47123 * 50.00465 * 12 11 10 27 27 H 1.08996 * 109.47236 * 290.00069 * 12 11 10 28 28 H 1.07994 * 119.58582 * 0.25015 * 14 13 12 29 29 H 1.07991 * 119.62444 * 179.97438 * 16 15 14 30 30 H 1.09004 * 113.47631 * 87.75560 * 21 11 10 31 31 H 1.08997 * 113.47934 * 218.22322 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.1497 -3.7438 -0.0005 11 7 1.2050 -4.3603 -0.9506 12 6 1.9206 -5.0902 -2.0057 13 6 0.9383 -5.9039 -2.8084 14 6 0.7944 -7.2580 -2.5729 15 7 -0.0587 -7.9788 -3.2740 16 6 -0.8047 -7.4450 -4.2218 17 6 -0.7167 -6.0959 -4.5154 18 9 -1.4839 -5.5552 -5.4871 19 6 0.1715 -5.3040 -3.7966 20 17 0.3183 -3.6064 -4.1283 21 6 0.8517 -2.9994 -1.3959 22 1 -0.4850 0.8400 0.0004 23 1 0.4452 -2.5309 0.7328 24 1 2.1891 -4.2509 0.9635 25 1 3.1383 -3.5668 -0.4243 26 1 2.6575 -5.7535 -1.5529 27 1 2.4250 -4.3799 -2.6608 28 1 1.3883 -7.7318 -1.8054 29 1 -1.4918 -8.0681 -4.7748 30 1 1.4936 -2.6227 -2.1923 31 1 -0.2089 -2.8756 -1.6144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235490681.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:15 Heat of formation + Delta-G solvation = 4.516592 kcal Electronic energy + Delta-G solvation = -18133.877864 eV Core-core repulsion = 14970.215319 eV Total energy + Delta-G solvation = -3163.662544 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.16707 -41.51710 -40.37526 -37.91319 -35.10674 -34.07715 -32.45786 -30.39270 -27.62640 -26.59093 -25.14670 -24.70191 -22.75137 -20.52944 -18.93976 -18.72217 -18.40751 -18.04497 -17.19778 -16.73000 -16.37756 -15.82421 -15.49813 -15.27926 -14.76354 -14.63122 -14.35031 -14.02306 -13.86307 -13.38137 -13.24859 -13.07043 -12.89791 -12.41004 -12.16944 -12.00422 -11.65821 -11.26910 -10.93745 -10.80129 -10.59349 -10.33297 -10.07964 -9.69184 -8.15107 -6.25742 -0.34501 -0.27878 0.75473 1.40210 1.42622 1.53493 2.34942 2.42393 2.69716 3.14658 3.23654 3.36595 3.49855 3.54297 3.84301 4.13690 4.30347 4.35419 4.41518 4.58228 4.66935 4.69651 4.79488 4.89086 5.00260 5.28536 5.35456 5.46826 5.63918 5.86103 6.28701 6.34922 6.59713 6.84626 7.42832 8.94825 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.029658 B = 0.005357 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.860930 B = 5225.169920 C = 5836.234316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.013 3.987 10 C 0.014 3.986 11 N -0.478 5.478 12 C 0.054 3.946 13 C -0.089 4.089 14 C 0.123 3.877 15 N -0.462 5.462 16 C 0.092 3.908 17 C 0.042 3.958 18 F -0.124 7.124 19 C -0.045 4.045 20 Cl -0.038 7.038 21 C 0.027 3.973 22 H 0.261 0.739 23 H 0.027 0.973 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.119 0.881 27 H 0.056 0.944 28 H 0.201 0.799 29 H 0.207 0.793 30 H 0.055 0.945 31 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 -14.188 -8.394 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.563 4.563 8 H 0.080 0.920 9 C -0.006 4.006 10 C -0.114 4.114 11 N -0.200 5.200 12 C -0.074 4.074 13 C -0.092 4.092 14 C -0.034 4.034 15 N -0.169 5.169 16 C -0.067 4.067 17 C 0.020 3.980 18 F -0.103 7.103 19 C -0.081 4.081 20 Cl -0.009 7.009 21 C -0.102 4.102 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.137 0.863 27 H 0.074 0.926 28 H 0.218 0.782 29 H 0.224 0.776 30 H 0.074 0.926 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.640 -15.293 -8.074 17.371 hybrid contribution 0.507 3.001 -0.837 3.157 sum 2.147 -12.292 -8.911 15.333 Atomic orbital electron populations 1.70109 1.07578 1.27366 1.51173 1.25809 0.95517 1.02651 0.94515 0.85576 0.79401 0.79657 0.77478 1.18477 1.21022 1.20632 1.21408 0.93077 0.91324 1.50503 0.91966 1.20116 0.94716 0.92381 0.93422 1.23842 0.95397 0.95203 0.96939 1.68864 1.27622 1.13043 1.10437 1.21688 0.94092 0.97835 0.93798 1.20823 0.97805 0.96156 0.94404 1.23223 0.94599 0.88568 0.97029 1.67856 1.05179 1.38659 1.05244 1.23406 0.98335 0.89528 0.95392 1.18796 0.94331 0.93724 0.91147 1.91539 1.72849 1.86332 1.59570 1.21807 0.99637 0.87369 0.99261 1.98451 1.96671 1.11297 1.94446 1.23905 0.98716 0.88116 0.99494 0.93019 0.95492 0.90030 0.91286 0.86329 0.92629 0.78236 0.77629 0.92639 0.94413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.31 13.26 21.45 0.28 -54.02 16 2 C 0.01 0.78 5.46 84.65 0.46 1.24 16 3 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.52 -28.07 8.83 25.60 0.23 -27.85 16 8 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.01 0.63 3.76 -11.19 -0.04 0.59 16 10 C 0.01 0.55 7.25 83.58 0.61 1.16 16 11 N -0.48 -17.60 6.32 -932.41 -5.89 -23.49 16 12 C 0.05 1.55 4.69 85.56 0.40 1.95 16 13 C -0.09 -2.37 5.48 -19.76 -0.11 -2.48 16 14 C 0.12 2.69 10.83 84.68 0.92 3.61 16 15 N -0.46 -10.30 10.36 -195.73 -2.03 -12.32 16 16 C 0.09 1.91 11.17 84.71 0.95 2.86 16 17 C 0.04 1.10 7.32 22.48 0.16 1.26 16 18 F -0.12 -3.32 16.94 44.97 0.76 -2.56 16 19 C -0.04 -1.32 6.37 22.57 0.14 -1.18 16 20 Cl -0.04 -1.28 23.62 -2.72 -0.06 -1.34 16 21 C 0.03 1.21 5.17 83.58 0.43 1.64 16 22 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 23 H 0.03 1.51 8.11 -2.39 -0.02 1.50 16 24 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 25 H 0.07 2.46 7.87 -2.38 -0.02 2.44 16 26 H 0.12 2.56 7.95 -2.39 -0.02 2.54 16 27 H 0.06 1.68 6.62 -2.39 -0.02 1.66 16 28 H 0.20 3.08 8.04 -2.91 -0.02 3.05 16 29 H 0.21 2.76 8.06 -2.92 -0.02 2.73 16 30 H 0.06 2.50 6.18 -2.38 -0.01 2.48 16 31 H 0.04 1.86 7.71 -2.39 -0.02 1.84 16 Total: -1.00 -62.46 282.49 0.39 -62.07 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.16 Total: 3.89 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 4.15 Total: -17.19 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -7.63 Total: -89.83 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.76 Total: -2.56 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.06 Total: -1.34 kcal Total: -62.46 0.39 -62.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235490681.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.585 kcal (2) G-P(sol) polarization free energy of solvation -62.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds