Wall clock time and date at job start Mon Mar 30 2020 01:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30656 * 1 3 3 Si 1.86799 * 120.00107 * 2 1 4 4 H 1.48503 * 109.47027 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47045 * 120.00014 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00010 * 3 2 1 7 7 C 1.40230 * 119.99449 * 179.72116 * 2 1 3 8 8 H 1.08001 * 119.99119 * 159.63629 * 7 2 1 9 9 C 1.40786 * 120.00426 * 339.64178 * 7 2 1 10 10 N 1.33991 * 120.28735 * 337.77498 * 9 7 2 11 11 C 1.31564 * 119.90374 * 180.02562 * 10 9 7 12 12 C 1.39273 * 120.50000 * 359.97438 * 11 10 9 13 13 N 1.31948 * 120.58640 * 359.97438 * 12 11 10 14 14 C 1.32885 * 120.08359 * 359.74578 * 13 12 11 15 15 C 1.47755 * 120.25528 * 180.27491 * 14 13 12 16 16 C 1.39796 * 120.00123 * 136.38454 * 15 14 13 17 17 C 1.37606 * 119.99513 * 179.74280 * 16 15 14 18 18 C 1.39787 * 120.00123 * 0.54005 * 17 16 15 19 19 C 1.47664 * 119.99676 * 179.74389 * 18 17 16 20 20 O 1.21484 * 119.99809 * 179.97438 * 19 18 17 21 21 O 1.34730 * 120.00076 * 359.96955 * 19 18 17 22 22 C 1.39785 * 120.00388 * 359.71713 * 18 17 16 23 23 C 1.37603 * 120.00237 * 0.02562 * 22 18 17 24 24 H 0.96994 * 120.00044 * 173.93455 * 1 2 3 25 25 H 1.07998 * 119.75413 * 180.02562 * 11 10 9 26 26 H 1.07995 * 119.70829 * 180.02562 * 12 11 10 27 27 H 1.08003 * 120.00571 * 359.97438 * 16 15 14 28 28 H 1.08008 * 119.99869 * 180.25410 * 17 16 15 29 29 H 0.96700 * 116.99738 * 180.02562 * 21 19 18 30 30 H 1.08000 * 119.99675 * 180.02562 * 22 18 17 31 31 H 1.07997 * 119.99807 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 1.2756 2.7464 0.0006 5 1 3.0943 1.6963 1.2125 6 1 3.0943 1.6963 -1.2125 7 6 2.0076 -1.2145 0.0059 8 1 3.0370 -1.2452 -0.3194 9 6 1.3696 -2.3936 0.4358 10 7 0.2966 -2.3282 1.2357 11 6 -0.2934 -3.4349 1.6333 12 6 0.1882 -4.6774 1.2287 13 7 1.2428 -4.7645 0.4404 14 6 1.8533 -3.6615 0.0204 15 6 3.0308 -3.7544 -0.8674 16 6 3.1453 -2.9005 -1.9683 17 6 4.2445 -2.9836 -2.7919 18 6 5.2412 -3.9293 -2.5342 19 6 6.4179 -4.0221 -3.4214 20 8 7.2843 -4.8437 -3.1971 21 8 6.5307 -3.1958 -4.4795 22 6 5.1241 -4.7867 -1.4364 23 6 4.0276 -4.7002 -0.6097 24 1 -0.4850 -0.8353 -0.0888 25 1 -1.1583 -3.3794 2.2777 26 1 -0.3062 -5.5777 1.5624 27 1 2.3729 -2.1732 -2.1704 28 1 4.3350 -2.3212 -3.6402 29 1 7.3185 -3.2945 -5.0315 30 1 5.8944 -5.5170 -1.2372 31 1 3.9374 -5.3624 0.2387 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236054284.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:11 Heat of formation + Delta-G solvation = -41.304263 kcal Electronic energy + Delta-G solvation = -19357.594702 eV Core-core repulsion = 16182.005276 eV Total energy + Delta-G solvation = -3175.589426 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.19248 -39.49976 -37.94175 -35.96318 -34.61862 -32.88525 -31.51658 -30.64435 -29.16524 -26.25182 -24.79336 -22.70613 -22.10041 -21.72679 -20.47922 -18.47544 -17.93811 -17.26553 -16.25330 -16.08176 -15.46422 -14.98221 -14.48206 -14.27687 -14.09923 -13.68309 -13.31966 -13.13106 -12.86165 -12.51843 -12.26755 -11.99062 -11.46580 -11.39301 -11.19532 -10.69369 -10.56632 -10.44946 -10.22311 -10.12664 -9.97351 -9.39543 -8.74264 -8.57949 -7.99290 -7.84151 -7.27548 -4.96610 0.90672 1.84283 2.15714 2.56234 2.93014 3.02742 3.10499 3.18169 3.22719 3.80282 4.19847 4.38579 5.08314 5.16658 5.25728 5.33133 5.44827 5.62624 5.77963 5.87126 5.97483 6.09460 6.23269 6.40557 6.43882 6.51946 6.68044 6.70412 6.82190 7.12212 7.25781 7.30431 7.40820 7.55037 8.01452 8.15565 8.25491 8.83651 9.32336 9.76784 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.006686 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.876192 B = 4186.643966 C = 5630.672539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.034 3.966 3 Si 1.066 2.934 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.449 4.449 8 H 0.098 0.902 9 C 0.209 3.791 10 N -0.516 5.516 11 C 0.107 3.893 12 C -0.117 4.117 13 N -0.400 5.400 14 C -0.041 4.041 15 C 0.071 3.929 16 C -0.116 4.116 17 C -0.063 4.063 18 C -0.160 4.160 19 C 0.532 3.468 20 O -0.528 6.528 21 O -0.514 6.514 22 C -0.055 4.055 23 C -0.127 4.127 24 H 0.309 0.691 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.141 0.859 28 H 0.133 0.867 29 H 0.408 0.592 30 H 0.130 0.870 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.822 -1.153 -4.742 7.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.195 4.195 3 Si 0.888 3.112 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.479 4.479 8 H 0.116 0.884 9 C 0.086 3.914 10 N -0.234 5.234 11 C -0.064 4.064 12 C -0.279 4.279 13 N -0.112 5.112 14 C -0.187 4.187 15 C 0.069 3.931 16 C -0.135 4.135 17 C -0.082 4.082 18 C -0.162 4.162 19 C 0.378 3.622 20 O -0.419 6.419 21 O -0.325 6.325 22 C -0.073 4.073 23 C -0.146 4.146 24 H 0.124 0.876 25 H 0.154 0.846 26 H 0.152 0.848 27 H 0.159 0.841 28 H 0.150 0.850 29 H 0.266 0.734 30 H 0.147 0.853 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.431 0.333 -4.384 6.988 hybrid contribution 0.510 -1.963 -0.156 2.034 sum 5.942 -1.630 -4.540 7.653 Atomic orbital electron populations 1.70207 1.08317 1.35583 1.21649 1.27246 0.95747 1.04354 0.92169 0.83612 0.75732 0.73383 0.78498 1.19399 1.19658 1.19462 1.20799 1.00686 0.92331 1.34056 0.88430 1.19189 0.89526 0.92642 0.90068 1.69039 1.11449 1.29233 1.13658 1.23413 0.97227 0.90183 0.95609 1.22554 1.00238 0.97362 1.07760 1.67669 1.05752 1.31602 1.06143 1.20093 1.01654 0.90278 1.06721 1.18651 0.91316 0.91833 0.91264 1.21437 0.98415 0.99961 0.93710 1.21268 0.92434 0.95908 0.98561 1.18892 0.95268 1.03406 0.98586 1.21075 0.85664 0.76884 0.78580 1.90842 1.42052 1.36702 1.72333 1.84607 1.49273 1.59085 1.39516 1.21020 0.97353 0.96677 0.92251 1.21195 0.93318 0.99695 1.00379 0.87605 0.84613 0.84806 0.84103 0.84950 0.73431 0.85259 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -18.35 13.11 55.56 0.73 -17.62 16 2 C 0.03 0.79 5.30 -17.30 -0.09 0.70 16 3 Si 1.07 19.62 29.98 -169.99 -5.10 14.53 16 4 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.27 -4.58 7.11 56.52 0.40 -4.18 16 7 C -0.45 -10.70 6.94 -37.87 -0.26 -10.96 16 8 H 0.10 2.21 6.16 -52.49 -0.32 1.88 16 9 C 0.21 5.19 6.06 -84.55 -0.51 4.68 16 10 N -0.52 -12.80 8.02 -10.72 -0.09 -12.89 16 11 C 0.11 2.31 11.22 -17.28 -0.19 2.12 16 12 C -0.12 -2.49 11.22 -17.12 -0.19 -2.68 16 13 N -0.40 -9.23 10.29 -8.97 -0.09 -9.32 16 14 C -0.04 -0.97 6.41 -82.11 -0.53 -1.50 16 15 C 0.07 1.47 5.26 -104.84 -0.55 0.92 16 16 C -0.12 -2.19 7.69 -39.23 -0.30 -2.50 16 17 C -0.06 -1.04 9.60 -39.23 -0.38 -1.41 16 18 C -0.16 -2.63 5.88 -104.89 -0.62 -3.24 16 19 C 0.53 8.03 8.27 34.58 0.29 8.32 16 20 O -0.53 -9.08 17.12 -19.25 -0.33 -9.41 16 21 O -0.51 -5.95 12.66 -40.57 -0.51 -6.46 16 22 C -0.05 -0.92 9.58 -39.24 -0.38 -1.30 16 23 C -0.13 -2.36 9.64 -39.23 -0.38 -2.73 16 24 H 0.31 8.00 6.60 -40.82 -0.27 7.73 16 25 H 0.14 2.43 8.06 -52.49 -0.42 2.01 16 26 H 0.13 2.40 8.06 -52.49 -0.42 1.97 16 27 H 0.14 2.75 6.76 -52.48 -0.35 2.40 16 28 H 0.13 1.85 7.60 -52.48 -0.40 1.46 16 29 H 0.41 2.68 9.11 45.56 0.42 3.09 16 30 H 0.13 1.99 7.64 -52.49 -0.40 1.59 16 31 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 283.60 15.07 4.27 4.27 Total: -1.00 -29.13 283.60 -6.61 -35.74 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -1.40 Total: 10.75 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -4.09 Total: -9.59 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.55 Total: -39.82 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.84 Total: -15.87 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.10 Total: 14.53 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.13 -6.61 -35.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236054284.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.566 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds