Wall clock time and date at job start Mon Mar 30 2020 01:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30656 * 1 3 3 Si 1.86799 * 120.00107 * 2 1 4 4 H 1.48503 * 109.47027 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47045 * 120.00014 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00010 * 3 2 1 7 7 C 1.40230 * 119.99449 * 179.72116 * 2 1 3 8 8 H 1.08001 * 119.99119 * 159.63629 * 7 2 1 9 9 C 1.40786 * 120.00426 * 339.64178 * 7 2 1 10 10 N 1.33991 * 120.28735 * 337.77498 * 9 7 2 11 11 C 1.31564 * 119.90374 * 180.02562 * 10 9 7 12 12 C 1.39273 * 120.50000 * 359.97438 * 11 10 9 13 13 N 1.31948 * 120.58640 * 359.97438 * 12 11 10 14 14 C 1.32885 * 120.08359 * 359.74578 * 13 12 11 15 15 C 1.47755 * 120.25528 * 180.27491 * 14 13 12 16 16 C 1.39796 * 120.00123 * 136.38454 * 15 14 13 17 17 C 1.37606 * 119.99513 * 179.74280 * 16 15 14 18 18 C 1.39787 * 120.00123 * 0.54005 * 17 16 15 19 19 C 1.47664 * 119.99676 * 179.74389 * 18 17 16 20 20 O 1.21484 * 119.99809 * 179.97438 * 19 18 17 21 21 O 1.34730 * 120.00076 * 359.96955 * 19 18 17 22 22 C 1.39785 * 120.00388 * 359.71713 * 18 17 16 23 23 C 1.37603 * 120.00237 * 0.02562 * 22 18 17 24 24 H 0.96994 * 120.00044 * 173.93455 * 1 2 3 25 25 H 1.07998 * 119.75413 * 180.02562 * 11 10 9 26 26 H 1.07995 * 119.70829 * 180.02562 * 12 11 10 27 27 H 1.08003 * 120.00571 * 359.97438 * 16 15 14 28 28 H 1.08008 * 119.99869 * 180.25410 * 17 16 15 29 29 H 0.96700 * 116.99738 * 180.02562 * 21 19 18 30 30 H 1.08000 * 119.99675 * 180.02562 * 22 18 17 31 31 H 1.07997 * 119.99807 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 1.2756 2.7464 0.0006 5 1 3.0943 1.6963 1.2125 6 1 3.0943 1.6963 -1.2125 7 6 2.0076 -1.2145 0.0059 8 1 3.0370 -1.2452 -0.3194 9 6 1.3696 -2.3936 0.4358 10 7 0.2966 -2.3282 1.2357 11 6 -0.2934 -3.4349 1.6333 12 6 0.1882 -4.6774 1.2287 13 7 1.2428 -4.7645 0.4404 14 6 1.8533 -3.6615 0.0204 15 6 3.0308 -3.7544 -0.8674 16 6 3.1453 -2.9005 -1.9683 17 6 4.2445 -2.9836 -2.7919 18 6 5.2412 -3.9293 -2.5342 19 6 6.4179 -4.0221 -3.4214 20 8 7.2843 -4.8437 -3.1971 21 8 6.5307 -3.1958 -4.4795 22 6 5.1241 -4.7867 -1.4364 23 6 4.0276 -4.7002 -0.6097 24 1 -0.4850 -0.8353 -0.0888 25 1 -1.1583 -3.3794 2.2777 26 1 -0.3062 -5.5777 1.5624 27 1 2.3729 -2.1732 -2.1704 28 1 4.3350 -2.3212 -3.6402 29 1 7.3185 -3.2945 -5.0315 30 1 5.8944 -5.5170 -1.2372 31 1 3.9374 -5.3624 0.2387 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236054284.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:10 Heat of formation + Delta-G solvation = -59.678792 kcal Electronic energy + Delta-G solvation = -19358.391481 eV Core-core repulsion = 16182.005276 eV Total energy + Delta-G solvation = -3176.386205 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.50876 -41.06844 -39.35137 -37.05702 -36.35769 -34.53228 -33.16984 -32.04529 -30.74430 -27.98039 -26.26109 -24.27250 -23.67913 -23.20339 -21.84937 -20.20816 -19.09643 -18.53792 -17.98127 -17.56171 -16.69789 -16.61006 -15.91917 -15.75090 -15.52241 -15.18468 -14.90065 -14.60658 -14.29579 -14.05127 -13.73454 -13.49883 -12.93577 -12.68115 -12.55856 -12.11167 -12.01291 -11.98719 -11.80623 -11.69525 -11.64517 -11.06783 -10.33850 -9.98717 -9.74398 -9.50527 -9.03105 -6.75694 -0.49474 0.44697 0.50063 0.84528 1.53541 1.58990 1.64741 1.81617 2.10105 2.29238 2.64911 2.82210 3.48209 3.54692 3.86837 3.97569 4.00614 4.16584 4.26053 4.42500 4.46419 4.57164 4.70825 4.87517 4.96877 5.11076 5.26485 5.36302 5.51165 5.58344 5.61880 5.68394 5.76885 5.87725 6.39688 6.51203 7.01002 7.08972 7.56959 7.94027 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.006686 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.876192 B = 4186.643966 C = 5630.672539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.005 3.995 3 Si 1.112 2.888 4 H -0.271 1.271 5 H -0.267 1.267 6 H -0.243 1.243 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.184 3.816 10 N -0.547 5.547 11 C 0.096 3.904 12 C -0.116 4.116 13 N -0.418 5.418 14 C -0.052 4.052 15 C 0.040 3.960 16 C -0.122 4.122 17 C -0.050 4.050 18 C -0.156 4.156 19 C 0.543 3.457 20 O -0.549 6.549 21 O -0.501 6.501 22 C -0.051 4.051 23 C -0.128 4.128 24 H 0.292 0.708 25 H 0.170 0.830 26 H 0.169 0.831 27 H 0.128 0.872 28 H 0.161 0.839 29 H 0.433 0.567 30 H 0.146 0.854 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.522 -1.053 -5.861 9.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.218 4.218 3 Si 0.928 3.072 4 H -0.196 1.196 5 H -0.192 1.192 6 H -0.166 1.166 7 C -0.499 4.499 8 H 0.121 0.879 9 C 0.061 3.939 10 N -0.266 5.266 11 C -0.073 4.073 12 C -0.277 4.277 13 N -0.130 5.130 14 C -0.198 4.198 15 C 0.039 3.961 16 C -0.141 4.141 17 C -0.068 4.068 18 C -0.158 4.158 19 C 0.389 3.611 20 O -0.442 6.442 21 O -0.315 6.315 22 C -0.069 4.069 23 C -0.147 4.147 24 H 0.105 0.895 25 H 0.187 0.813 26 H 0.186 0.814 27 H 0.146 0.854 28 H 0.179 0.821 29 H 0.295 0.705 30 H 0.163 0.837 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.141 0.407 -5.530 9.041 hybrid contribution 0.026 -2.154 0.133 2.158 sum 7.167 -1.747 -5.398 9.141 Atomic orbital electron populations 1.70315 1.09230 1.34398 1.24701 1.28587 0.95644 1.07283 0.90309 0.83085 0.74915 0.69538 0.79692 1.19587 1.19208 1.16618 1.20937 1.00989 0.92674 1.35280 0.87927 1.19588 0.90014 0.93758 0.90542 1.69023 1.12163 1.30854 1.14573 1.23980 0.97951 0.89738 0.95654 1.23176 0.99452 0.98630 1.06473 1.67759 1.06594 1.31630 1.07038 1.20506 1.02459 0.89984 1.06826 1.18728 0.91416 0.93799 0.92175 1.21355 0.99153 0.99581 0.94002 1.21461 0.91068 0.95798 0.98438 1.19125 0.95697 1.02558 0.98419 1.20675 0.84645 0.76817 0.78952 1.90850 1.42594 1.37702 1.73057 1.84537 1.50823 1.57568 1.38554 1.21161 0.96874 0.96928 0.91945 1.21174 0.93549 0.99225 1.00793 0.89466 0.81294 0.81379 0.85446 0.82149 0.70476 0.83657 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -39.24 13.11 21.87 0.29 -38.96 16 2 C 0.01 0.24 5.30 85.35 0.45 0.70 16 3 Si 1.11 39.08 29.98 68.60 2.06 41.13 16 4 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 5 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 6 H -0.24 -7.43 7.11 99.48 0.71 -6.72 16 7 C -0.47 -22.84 6.94 23.38 0.16 -22.68 16 8 H 0.10 4.72 6.16 -2.91 -0.02 4.70 16 9 C 0.18 9.43 6.06 40.35 0.24 9.67 16 10 N -0.55 -27.86 8.02 -187.81 -1.51 -29.36 16 11 C 0.10 4.18 11.22 84.98 0.95 5.13 16 12 C -0.12 -4.87 11.22 84.92 0.95 -3.92 16 13 N -0.42 -19.43 10.29 -182.30 -1.88 -21.31 16 14 C -0.05 -2.51 6.41 42.41 0.27 -2.24 16 15 C 0.04 1.68 5.26 -20.01 -0.11 1.58 16 16 C -0.12 -4.56 7.69 22.50 0.17 -4.39 16 17 C -0.05 -1.51 9.60 22.50 0.22 -1.30 16 18 C -0.16 -4.74 5.88 -20.04 -0.12 -4.86 16 19 C 0.54 14.56 8.27 70.31 0.58 15.14 16 20 O -0.55 -17.24 17.12 19.89 0.34 -16.90 16 21 O -0.50 -9.48 12.66 -56.40 -0.71 -10.19 16 22 C -0.05 -1.63 9.58 22.49 0.22 -1.41 16 23 C -0.13 -4.72 9.64 22.50 0.22 -4.51 16 24 H 0.29 15.79 6.60 -92.71 -0.61 15.18 16 25 H 0.17 5.91 8.06 -2.91 -0.02 5.89 16 26 H 0.17 5.71 8.06 -2.91 -0.02 5.69 16 27 H 0.13 5.08 6.76 -2.91 -0.02 5.06 16 28 H 0.16 3.94 7.60 -2.91 -0.02 3.92 16 29 H 0.43 3.74 9.11 -74.06 -0.67 3.07 16 30 H 0.15 4.16 7.64 -2.91 -0.02 4.14 16 31 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -63.95 283.60 3.49 -60.46 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.68 Total: 28.20 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 4.22 Total: -13.07 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -3.10 Total: -89.63 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.37 Total: -27.10 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.06 Total: 41.13 kcal Total: -63.95 3.49 -60.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236054284.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.782 kcal (2) G-P(sol) polarization free energy of solvation -63.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds