Wall clock time and date at job start Mon Mar 30 2020 01:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30728 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48499 * 109.46928 * 89.99602 * 3 2 1 5 5 H 1.48498 * 109.47198 * 209.99562 * 3 2 1 6 6 H 1.48498 * 109.47201 * 329.99860 * 3 2 1 7 7 C 1.40059 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99340 * 9.41525 * 7 2 1 9 9 C 1.41341 * 120.00414 * 189.41641 * 7 2 1 10 10 C 1.40896 * 120.14659 * 197.06214 * 9 7 2 11 11 N 1.31851 * 119.95833 * 179.72882 * 10 9 7 12 12 C 1.32221 * 120.27954 * 0.54519 * 11 10 9 13 13 C 1.39986 * 120.29866 * 359.73199 * 12 11 10 14 14 C 1.48259 * 119.98335 * 179.97438 * 13 12 11 15 15 C 1.39521 * 119.97464 * 184.70326 * 14 13 12 16 16 C 1.37686 * 120.02139 * 179.76777 * 15 14 13 17 17 C 1.39723 * 119.97865 * 0.48014 * 16 15 14 18 18 C 1.47670 * 120.02621 * 179.74405 * 17 16 15 19 19 O 1.21481 * 119.99901 * 180.02562 * 18 17 16 20 20 O 1.34725 * 119.99946 * 0.02722 * 18 17 16 21 21 C 1.39725 * 119.95032 * 359.77603 * 17 16 15 22 22 C 1.37695 * 119.97404 * 359.97438 * 21 17 16 23 23 N 1.32567 * 120.03326 * 359.97340 * 13 12 11 24 24 H 0.97003 * 119.99780 * 174.91723 * 1 2 3 25 25 H 1.08000 * 120.01960 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.84991 * 179.74435 * 12 11 10 27 27 H 1.08000 * 119.98706 * 0.02562 * 15 14 13 28 28 H 1.08006 * 120.00988 * 180.23147 * 16 15 14 29 29 H 0.96701 * 116.99885 * 179.97438 * 20 18 17 30 30 H 1.08001 * 120.01454 * 179.97438 * 21 17 16 31 31 H 1.07996 * 119.98301 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4887 2.0465 1.4001 5 1 3.5389 1.4402 -0.6999 6 1 1.4388 2.6527 -0.7001 7 6 2.0076 -1.2129 0.0005 8 1 1.4785 -2.1419 -0.1521 9 6 3.4068 -1.2211 0.2008 10 6 4.1646 -2.3570 -0.1464 11 7 5.4703 -2.3586 0.0370 12 6 6.0719 -1.3018 0.5561 13 6 5.3292 -0.1694 0.9105 14 6 6.0108 1.0116 1.4925 15 6 5.2607 2.1010 1.9363 16 6 5.8924 3.1962 2.4813 17 6 7.2859 3.2206 2.5807 18 6 7.9649 4.3971 3.1600 19 8 9.1765 4.4180 3.2457 20 8 7.2407 5.4473 3.5933 21 6 8.0365 2.1313 2.1311 22 6 7.4023 1.0348 1.5910 23 7 4.0165 -0.1524 0.7259 24 1 -0.4850 -0.8368 -0.0744 25 1 3.6770 -3.2240 -0.5670 26 1 7.1413 -1.3122 0.7071 27 1 4.1838 2.0834 1.8560 28 1 5.3113 4.0379 2.8282 29 1 7.7295 6.1942 3.9651 30 1 9.1137 2.1492 2.2071 31 1 7.9823 0.1926 1.2438 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236054908.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:12 Heat of formation + Delta-G solvation = -41.286687 kcal Electronic energy + Delta-G solvation = -19194.733217 eV Core-core repulsion = 16019.144554 eV Total energy + Delta-G solvation = -3175.588664 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.46049 -39.70949 -38.28850 -36.17923 -34.37992 -33.28589 -32.09987 -30.93720 -29.61136 -26.23485 -25.08121 -23.08665 -22.57176 -21.38934 -20.59024 -18.69865 -18.18242 -17.59776 -16.35573 -16.04093 -15.80155 -15.69274 -14.75301 -14.42222 -14.15382 -13.84164 -13.53042 -13.21554 -13.13246 -12.76668 -12.52332 -11.93731 -11.68123 -11.65599 -11.32966 -11.07657 -10.79889 -10.63878 -10.25661 -9.92972 -9.58220 -9.35652 -8.98311 -8.94229 -8.01149 -7.87936 -7.41273 -5.07115 0.46614 1.47079 1.97290 2.39260 2.74960 2.93495 3.26179 3.39240 3.68712 3.88740 4.06235 4.41418 4.64236 4.89506 5.01855 5.04645 5.25940 5.34748 5.48786 5.58799 5.80180 5.85736 5.92038 6.15831 6.25412 6.35245 6.36430 6.47851 6.59802 6.79553 6.91018 7.10653 7.18051 7.73233 7.78762 7.87418 8.26902 8.64542 9.11937 9.72151 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022701 B = 0.005848 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.107124 B = 4786.804402 C = 5930.363012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.046 3.954 3 Si 1.128 2.872 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.316 1.316 7 C -0.457 4.457 8 H 0.091 0.909 9 C 0.202 3.798 10 C -0.031 4.031 11 N -0.423 5.423 12 C -0.092 4.092 13 C 0.146 3.854 14 C 0.018 3.982 15 C -0.118 4.118 16 C -0.063 4.063 17 C -0.140 4.140 18 C 0.531 3.469 19 O -0.521 6.521 20 O -0.512 6.512 21 C -0.056 4.056 22 C -0.118 4.118 23 N -0.524 5.524 24 H 0.289 0.711 25 H 0.143 0.857 26 H 0.140 0.860 27 H 0.150 0.850 28 H 0.139 0.861 29 H 0.411 0.589 30 H 0.138 0.862 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.023 7.301 4.235 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.177 4.177 3 Si 0.960 3.040 4 H -0.202 1.202 5 H -0.201 1.201 6 H -0.248 1.248 7 C -0.489 4.489 8 H 0.109 0.891 9 C 0.076 3.924 10 C -0.203 4.203 11 N -0.134 5.134 12 C -0.249 4.249 13 C 0.003 3.997 14 C 0.017 3.983 15 C -0.136 4.136 16 C -0.081 4.081 17 C -0.142 4.142 18 C 0.377 3.623 19 O -0.412 6.412 20 O -0.323 6.323 21 C -0.074 4.074 22 C -0.137 4.137 23 N -0.246 5.246 24 H 0.100 0.900 25 H 0.160 0.840 26 H 0.157 0.843 27 H 0.167 0.833 28 H 0.156 0.844 29 H 0.270 0.730 30 H 0.156 0.844 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.823 8.491 4.151 12.930 hybrid contribution 0.294 -1.431 0.234 1.480 sum 9.117 7.060 4.385 12.336 Atomic orbital electron populations 1.70576 1.08117 1.33393 1.29063 1.27687 0.95341 1.05828 0.88881 0.82583 0.73039 0.70440 0.77935 1.20248 1.20066 1.24758 1.20762 0.90850 0.96953 1.40369 0.89091 1.19378 0.94851 0.88326 0.89840 1.23321 0.89717 1.00279 1.06971 1.67759 1.11279 1.26262 1.08054 1.22549 0.99492 0.91688 1.11151 1.20263 0.91070 0.92765 0.95601 1.19030 0.92653 0.92546 0.94105 1.21865 1.02448 0.92163 0.97152 1.21418 0.92849 0.98250 0.95600 1.19042 0.94021 0.93620 1.07513 1.20974 0.84947 0.82284 0.74143 1.90866 1.15335 1.81110 1.53843 1.84593 1.44780 1.28837 1.74103 1.21086 1.00265 0.91254 0.94782 1.21206 0.93453 0.98646 1.00384 1.67778 1.08342 1.28451 1.19982 0.89972 0.83986 0.84321 0.83278 0.84356 0.73031 0.84437 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.94 13.65 55.55 0.76 -19.18 16 2 C 0.05 1.15 5.52 -17.34 -0.10 1.06 16 3 Si 1.13 25.45 24.55 -169.99 -4.17 21.27 16 4 H -0.27 -5.82 5.53 56.52 0.31 -5.51 16 5 H -0.27 -6.32 6.40 56.52 0.36 -5.96 16 6 H -0.32 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.46 -11.42 9.57 -37.72 -0.36 -11.79 16 8 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 9 C 0.20 4.93 6.15 -84.84 -0.52 4.41 16 10 C -0.03 -0.71 10.98 -16.54 -0.18 -0.89 16 11 N -0.42 -9.42 10.47 -12.05 -0.13 -9.55 16 12 C -0.09 -1.90 10.61 -16.73 -0.18 -2.07 16 13 C 0.15 3.11 6.73 -82.77 -0.56 2.55 16 14 C 0.02 0.33 5.88 -104.82 -0.62 -0.29 16 15 C -0.12 -2.04 9.48 -39.31 -0.37 -2.41 16 16 C -0.06 -0.91 9.60 -39.23 -0.38 -1.28 16 17 C -0.14 -1.95 5.88 -104.94 -0.62 -2.57 16 18 C 0.53 6.83 8.27 34.58 0.29 7.12 16 19 O -0.52 -7.79 17.12 -19.25 -0.33 -8.12 16 20 O -0.51 -4.97 12.67 -40.56 -0.51 -5.48 16 21 C -0.06 -0.75 9.58 -39.22 -0.38 -1.13 16 22 C -0.12 -1.72 9.40 -39.30 -0.37 -2.09 16 23 N -0.52 -12.43 4.53 -7.51 -0.03 -12.47 16 24 H 0.29 6.92 8.73 -40.82 -0.36 6.56 16 25 H 0.14 2.94 8.06 -52.49 -0.42 2.51 16 26 H 0.14 2.36 6.20 -52.49 -0.33 2.04 16 27 H 0.15 2.83 4.08 -52.49 -0.21 2.61 16 28 H 0.14 1.69 7.60 -52.48 -0.40 1.29 16 29 H 0.41 1.99 9.11 45.56 0.42 2.40 16 30 H 0.14 1.64 7.64 -52.49 -0.40 1.24 16 31 H 0.14 1.74 6.20 -52.49 -0.33 1.42 16 LS Contribution 275.32 15.07 4.15 4.15 Total: -1.00 -29.01 275.32 -5.98 -34.99 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -1.38 Total: 3.78 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -4.34 Total: -9.39 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.60 Total: -41.19 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.84 Total: -13.60 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -4.17 Total: 21.27 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.01 -5.98 -34.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236054908.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.300 kcal (2) G-P(sol) polarization free energy of solvation -29.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds