Wall clock time and date at job start Mon Mar 30 2020 01:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30728 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48499 * 109.46928 * 89.99602 * 3 2 1 5 5 H 1.48498 * 109.47198 * 209.99562 * 3 2 1 6 6 H 1.48498 * 109.47201 * 329.99860 * 3 2 1 7 7 C 1.40059 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99340 * 9.41525 * 7 2 1 9 9 C 1.41341 * 120.00414 * 189.41641 * 7 2 1 10 10 C 1.40896 * 120.14659 * 197.06214 * 9 7 2 11 11 N 1.31851 * 119.95833 * 179.72882 * 10 9 7 12 12 C 1.32221 * 120.27954 * 0.54519 * 11 10 9 13 13 C 1.39986 * 120.29866 * 359.73199 * 12 11 10 14 14 C 1.48259 * 119.98335 * 179.97438 * 13 12 11 15 15 C 1.39521 * 119.97464 * 184.70326 * 14 13 12 16 16 C 1.37686 * 120.02139 * 179.76777 * 15 14 13 17 17 C 1.39723 * 119.97865 * 0.48014 * 16 15 14 18 18 C 1.47670 * 120.02621 * 179.74405 * 17 16 15 19 19 O 1.21481 * 119.99901 * 180.02562 * 18 17 16 20 20 O 1.34725 * 119.99946 * 0.02722 * 18 17 16 21 21 C 1.39725 * 119.95032 * 359.77603 * 17 16 15 22 22 C 1.37695 * 119.97404 * 359.97438 * 21 17 16 23 23 N 1.32567 * 120.03326 * 359.97340 * 13 12 11 24 24 H 0.97003 * 119.99780 * 174.91723 * 1 2 3 25 25 H 1.08000 * 120.01960 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.84991 * 179.74435 * 12 11 10 27 27 H 1.08000 * 119.98706 * 0.02562 * 15 14 13 28 28 H 1.08006 * 120.00988 * 180.23147 * 16 15 14 29 29 H 0.96701 * 116.99885 * 179.97438 * 20 18 17 30 30 H 1.08001 * 120.01454 * 179.97438 * 21 17 16 31 31 H 1.07996 * 119.98301 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4887 2.0465 1.4001 5 1 3.5389 1.4402 -0.6999 6 1 1.4388 2.6527 -0.7001 7 6 2.0076 -1.2129 0.0005 8 1 1.4785 -2.1419 -0.1521 9 6 3.4068 -1.2211 0.2008 10 6 4.1646 -2.3570 -0.1464 11 7 5.4703 -2.3586 0.0370 12 6 6.0719 -1.3018 0.5561 13 6 5.3292 -0.1694 0.9105 14 6 6.0108 1.0116 1.4925 15 6 5.2607 2.1010 1.9363 16 6 5.8924 3.1962 2.4813 17 6 7.2859 3.2206 2.5807 18 6 7.9649 4.3971 3.1600 19 8 9.1765 4.4180 3.2457 20 8 7.2407 5.4473 3.5933 21 6 8.0365 2.1313 2.1311 22 6 7.4023 1.0348 1.5910 23 7 4.0165 -0.1524 0.7259 24 1 -0.4850 -0.8368 -0.0744 25 1 3.6770 -3.2240 -0.5670 26 1 7.1413 -1.3122 0.7071 27 1 4.1838 2.0834 1.8560 28 1 5.3113 4.0379 2.8282 29 1 7.7295 6.1942 3.9651 30 1 9.1137 2.1492 2.2071 31 1 7.9823 0.1926 1.2438 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236054908.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:12 Heat of formation + Delta-G solvation = -60.146849 kcal Electronic energy + Delta-G solvation = -19195.551055 eV Core-core repulsion = 16019.144554 eV Total energy + Delta-G solvation = -3176.406502 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.64389 -41.18832 -39.52328 -37.09325 -36.20455 -34.89449 -33.69337 -32.12999 -31.10257 -27.95878 -26.45630 -24.60204 -23.82350 -22.88250 -21.84990 -20.52638 -19.20573 -18.68374 -17.97968 -17.56624 -17.31626 -16.65297 -16.21356 -15.78229 -15.63678 -15.27154 -15.06340 -14.63208 -14.50812 -14.28399 -13.79941 -13.40411 -13.08586 -12.98159 -12.86680 -12.58508 -12.11130 -12.01564 -11.74166 -11.71047 -11.25263 -11.12577 -10.61160 -10.08353 -9.80577 -9.45258 -9.23567 -6.95084 -0.79186 0.32701 0.43065 0.66527 1.44995 1.50859 1.62816 1.88849 2.04863 2.26575 2.49224 2.77708 3.18893 3.47611 3.72745 3.81217 3.90061 3.95575 4.14383 4.28942 4.39666 4.47678 4.60934 4.79200 4.85322 5.01985 5.15797 5.24577 5.28541 5.38164 5.47150 5.56564 5.72994 5.86455 6.07282 6.42645 6.88026 6.97175 7.35340 7.84180 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022701 B = 0.005848 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.107124 B = 4786.804402 C = 5930.363012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.023 3.977 3 Si 1.152 2.848 4 H -0.259 1.259 5 H -0.285 1.285 6 H -0.314 1.314 7 C -0.488 4.488 8 H 0.081 0.919 9 C 0.192 3.808 10 C -0.050 4.050 11 N -0.429 5.429 12 C -0.080 4.080 13 C 0.138 3.862 14 C -0.012 4.012 15 C -0.133 4.133 16 C -0.056 4.056 17 C -0.136 4.136 18 C 0.540 3.460 19 O -0.542 6.542 20 O -0.503 6.503 21 C -0.049 4.049 22 C -0.104 4.104 23 N -0.538 5.538 24 H 0.287 0.713 25 H 0.155 0.845 26 H 0.181 0.819 27 H 0.128 0.872 28 H 0.159 0.841 29 H 0.435 0.565 30 H 0.160 0.840 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.973 8.833 5.251 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.196 4.196 3 Si 0.982 3.018 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.245 1.245 7 C -0.522 4.522 8 H 0.099 0.901 9 C 0.065 3.935 10 C -0.218 4.218 11 N -0.140 5.140 12 C -0.237 4.237 13 C -0.004 4.004 14 C -0.014 4.014 15 C -0.152 4.152 16 C -0.074 4.074 17 C -0.138 4.138 18 C 0.386 3.614 19 O -0.434 6.434 20 O -0.317 6.317 21 C -0.067 4.067 22 C -0.122 4.122 23 N -0.260 5.260 24 H 0.099 0.901 25 H 0.172 0.828 26 H 0.198 0.802 27 H 0.146 0.854 28 H 0.177 0.823 29 H 0.297 0.703 30 H 0.177 0.823 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 11.749 10.023 5.179 16.289 hybrid contribution -0.328 -1.814 0.019 1.843 sum 11.422 8.209 5.198 14.996 Atomic orbital electron populations 1.70592 1.08372 1.33360 1.31433 1.28317 0.95563 1.07338 0.88400 0.82282 0.71804 0.69009 0.78693 1.18568 1.21235 1.24530 1.20734 0.91562 0.96780 1.43086 0.90069 1.19516 0.94895 0.89242 0.89850 1.23469 0.90150 1.00464 1.07753 1.67842 1.10837 1.27032 1.08315 1.23294 1.01343 0.90619 1.08494 1.20875 0.90375 0.94389 0.94804 1.19015 0.94030 0.91880 0.96471 1.21752 1.01576 0.93325 0.98519 1.21523 0.93316 0.97823 0.94722 1.19292 0.93862 0.94251 1.06375 1.20686 0.84437 0.82538 0.73756 1.90874 1.16159 1.81616 1.54762 1.84539 1.44665 1.28978 1.73522 1.21342 1.01312 0.90514 0.93561 1.21379 0.91927 0.99648 0.99296 1.67754 1.09923 1.28351 1.19976 0.90130 0.82816 0.80235 0.85441 0.82316 0.70295 0.82254 0.81982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.54 13.65 21.84 0.30 -42.24 16 2 C 0.02 1.20 5.52 85.30 0.47 1.67 16 3 Si 1.15 52.34 24.55 68.60 1.68 54.02 16 4 H -0.26 -10.93 5.53 99.48 0.55 -10.38 16 5 H -0.28 -13.27 6.40 99.48 0.64 -12.63 16 6 H -0.31 -13.90 7.11 99.48 0.71 -13.20 16 7 C -0.49 -25.42 9.57 23.48 0.22 -25.19 16 8 H 0.08 4.22 8.06 -2.91 -0.02 4.19 16 9 C 0.19 9.53 6.15 40.26 0.25 9.78 16 10 C -0.05 -2.29 10.98 85.34 0.94 -1.35 16 11 N -0.43 -18.51 10.47 -192.02 -2.01 -20.52 16 12 C -0.08 -3.09 10.61 85.06 0.90 -2.18 16 13 C 0.14 5.68 6.73 42.12 0.28 5.97 16 14 C -0.01 -0.42 5.88 -19.99 -0.12 -0.53 16 15 C -0.13 -4.39 9.48 22.45 0.21 -4.17 16 16 C -0.06 -1.45 9.60 22.50 0.22 -1.23 16 17 C -0.14 -3.28 5.88 -20.07 -0.12 -3.40 16 18 C 0.54 11.80 8.27 70.31 0.58 12.38 16 19 O -0.54 -14.20 17.12 19.90 0.34 -13.86 16 20 O -0.50 -7.70 12.67 -56.35 -0.71 -8.42 16 21 C -0.05 -1.13 9.58 22.50 0.22 -0.91 16 22 C -0.10 -2.64 9.40 22.45 0.21 -2.43 16 23 N -0.54 -25.54 4.53 -177.67 -0.80 -26.35 16 24 H 0.29 14.42 8.73 -92.71 -0.81 13.61 16 25 H 0.15 6.47 8.06 -2.91 -0.02 6.45 16 26 H 0.18 5.32 6.20 -2.91 -0.02 5.30 16 27 H 0.13 4.75 4.08 -2.91 -0.01 4.74 16 28 H 0.16 3.37 7.60 -2.91 -0.02 3.35 16 29 H 0.43 2.37 9.11 -74.06 -0.67 1.69 16 30 H 0.16 3.03 7.64 -2.91 -0.02 3.01 16 31 H 0.16 3.26 6.20 -2.91 -0.02 3.25 16 Total: -1.00 -62.91 275.32 3.33 -59.58 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.27 Total: 9.39 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 4.27 Total: -11.61 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -2.52 Total: -89.11 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.37 Total: -22.28 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 1.68 Total: 54.02 kcal Total: -62.91 3.33 -59.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236054908.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.563 kcal (2) G-P(sol) polarization free energy of solvation -62.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds