Wall clock time and date at job start Mon Mar 30 2020 01:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86803 * 119.99748 * 2 1 4 4 H 1.48495 * 109.47425 * 274.99037 * 3 2 1 5 5 H 1.48503 * 109.46913 * 34.98872 * 3 2 1 6 6 H 1.48498 * 109.47185 * 154.98653 * 3 2 1 7 7 C 1.40194 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99940 * 186.32230 * 7 2 1 9 9 C 1.41118 * 120.00234 * 6.32335 * 7 2 1 10 10 N 1.33638 * 119.12674 * 173.60400 * 9 7 2 11 11 C 1.31584 * 120.83110 * 179.97438 * 10 9 7 12 12 C 1.40468 * 119.08697 * 359.97438 * 11 10 9 13 13 C 1.47843 * 120.79207 * 180.02562 * 12 11 10 14 14 C 1.39793 * 119.99651 * 359.73256 * 13 12 11 15 15 C 1.37105 * 119.99926 * 179.71938 * 14 13 12 16 16 C 1.39815 * 119.99901 * 0.57493 * 15 14 13 17 17 C 1.47604 * 120.00668 * 179.67748 * 16 15 14 18 18 O 1.21488 * 120.00143 * 180.02562 * 17 16 15 19 19 O 1.34737 * 119.99740 * 0.02562 * 17 16 15 20 20 C 1.39824 * 119.99257 * 359.69532 * 16 15 14 21 21 C 1.37104 * 119.99688 * 0.02562 * 20 16 15 22 22 C 1.40469 * 118.41061 * 0.02562 * 12 11 10 23 23 N 1.31578 * 119.08848 * 359.97438 * 22 12 11 24 24 H 0.97001 * 120.00460 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.45348 * 180.02562 * 11 10 9 26 26 H 1.07995 * 120.00026 * 359.97438 * 14 13 12 27 27 H 1.07999 * 120.00072 * 180.26977 * 15 14 13 28 28 H 0.96706 * 117.00095 * 180.02562 * 19 17 16 29 29 H 1.07996 * 120.00060 * 179.97438 * 20 16 15 30 30 H 1.07996 * 119.99721 * 180.02562 * 21 20 16 31 31 H 1.08002 * 120.45355 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.3823 2.1074 -1.3947 5 1 1.4943 2.6199 0.8028 6 1 3.5865 1.4122 0.5920 7 6 2.0073 -1.2141 -0.0005 8 1 3.0824 -1.2169 0.1025 9 6 1.3083 -2.4325 -0.1357 10 7 2.0002 -3.5686 -0.2636 11 6 1.3826 -4.7235 -0.3913 12 6 -0.0218 -4.7506 -0.3912 13 6 -0.7541 -6.0272 -0.5316 14 6 -0.0487 -7.2259 -0.6722 15 6 -0.7277 -8.4104 -0.7967 16 6 -2.1259 -8.4182 -0.7951 17 6 -2.8571 -9.6926 -0.9362 18 8 -4.0720 -9.6992 -0.9352 19 8 -2.1772 -10.8486 -1.0660 20 6 -2.8314 -7.2186 -0.6601 21 6 -2.1521 -6.0348 -0.5299 22 6 -0.7137 -3.5358 -0.2545 23 7 -0.0281 -2.4195 -0.1313 24 1 -0.4851 0.8400 0.0004 25 1 1.9479 -5.6381 -0.4938 26 1 1.0312 -7.2193 -0.6786 27 1 -0.1827 -9.3369 -0.9009 28 1 -2.6996 -11.6574 -1.1559 29 1 -3.9113 -7.2244 -0.6593 30 1 -2.6970 -5.1083 -0.4253 31 1 -1.7935 -3.5183 -0.2507 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236061403.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:18 Heat of formation + Delta-G solvation = -27.725716 kcal Electronic energy + Delta-G solvation = -18635.883638 eV Core-core repulsion = 15460.883022 eV Total energy + Delta-G solvation = -3175.000616 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.22517 -39.32203 -38.04573 -36.00237 -34.24056 -32.44036 -32.06926 -30.75996 -29.36480 -26.68579 -24.08022 -23.57982 -22.09133 -21.36246 -20.50357 -18.20322 -17.99635 -17.36064 -16.21348 -15.71636 -15.50728 -15.39261 -14.84203 -14.27516 -13.90033 -13.34597 -13.26817 -13.17003 -12.85255 -12.39823 -12.32152 -11.90650 -11.55795 -11.55273 -11.46953 -11.01514 -10.66827 -10.54715 -10.45202 -9.89583 -9.45749 -9.39139 -9.14666 -8.78673 -7.58941 -7.57688 -6.87827 -4.99809 0.79414 1.73468 2.20886 2.76508 2.83535 2.88451 2.93676 3.07127 3.15271 3.64178 4.11836 4.45822 5.03733 5.18540 5.26838 5.39346 5.56089 5.59003 5.66444 5.72770 5.84981 6.04302 6.18329 6.21848 6.44568 6.54112 6.59421 6.67028 6.70002 6.86215 7.17072 7.22624 7.38479 7.83638 7.98008 8.15078 8.23735 8.81287 9.76775 9.96743 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.058021 B = 0.003461 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.469935 B = 8087.801698 C = 8555.759294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.687 5.687 2 C 0.056 3.944 3 Si 0.926 3.074 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.361 4.361 8 H 0.100 0.900 9 C 0.374 3.626 10 N -0.591 5.591 11 C 0.197 3.803 12 C -0.346 4.346 13 C 0.085 3.915 14 C -0.170 4.170 15 C -0.042 4.042 16 C -0.188 4.188 17 C 0.531 3.469 18 O -0.531 6.531 19 O -0.517 6.517 20 C -0.034 4.034 21 C -0.166 4.166 22 C 0.190 3.810 23 N -0.509 5.509 24 H 0.283 0.717 25 H 0.136 0.864 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.408 0.592 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 -9.190 -1.128 9.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.307 5.307 2 C -0.173 4.173 3 Si 0.748 3.252 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.393 4.393 8 H 0.118 0.882 9 C 0.144 3.856 10 N -0.309 5.309 11 C 0.021 3.979 12 C -0.356 4.356 13 C 0.083 3.917 14 C -0.188 4.188 15 C -0.061 4.061 16 C -0.189 4.189 17 C 0.378 3.622 18 O -0.422 6.422 19 O -0.328 6.328 20 C -0.053 4.053 21 C -0.184 4.184 22 C 0.012 3.988 23 N -0.224 5.224 24 H 0.094 0.906 25 H 0.153 0.847 26 H 0.144 0.856 27 H 0.146 0.854 28 H 0.265 0.735 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.694 -7.565 -0.952 7.811 hybrid contribution -0.646 -0.827 -0.192 1.067 sum -2.341 -8.393 -1.145 8.788 Atomic orbital electron populations 1.70089 1.07618 1.29190 1.23758 1.26311 0.95207 1.02050 0.93780 0.85994 0.80506 0.79122 0.79576 1.18940 1.19587 1.17908 1.19675 0.95720 0.88002 1.35881 0.88178 1.19986 0.85972 0.90926 0.88743 1.68674 1.40730 0.98776 1.22704 1.22762 0.90519 0.95779 0.88870 1.19759 0.95400 0.93479 1.26950 1.19027 0.92445 0.92423 0.87798 1.21004 1.00154 0.91570 1.06068 1.21082 0.92599 0.98336 0.94046 1.18761 0.93605 0.89898 1.16671 1.21059 0.85434 0.84089 0.71648 1.90844 1.15310 1.87667 1.48383 1.84594 1.45036 1.17811 1.85368 1.20905 0.99925 0.90706 0.93736 1.20986 0.93729 0.97774 1.05917 1.23123 0.99205 0.87861 0.88648 1.69355 1.08261 1.26542 1.18279 0.90585 0.84725 0.85556 0.85365 0.73482 0.85378 0.85304 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.59 11.43 55.56 0.64 -15.95 16 2 C 0.06 1.30 5.49 -17.33 -0.10 1.21 16 3 Si 0.93 16.82 29.57 -169.99 -5.03 11.80 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 5 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 6 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 7 C -0.36 -9.11 9.35 -37.76 -0.35 -9.46 16 8 H 0.10 2.40 7.86 -52.49 -0.41 1.99 16 9 C 0.37 9.86 7.35 -158.16 -1.16 8.70 16 10 N -0.59 -14.63 10.34 -12.39 -0.13 -14.76 16 11 C 0.20 4.20 10.70 -16.82 -0.18 4.02 16 12 C -0.35 -7.11 5.93 -104.29 -0.62 -7.73 16 13 C 0.09 1.49 5.89 -104.80 -0.62 0.87 16 14 C -0.17 -2.59 9.41 -39.41 -0.37 -2.96 16 15 C -0.04 -0.59 9.58 -39.40 -0.38 -0.97 16 16 C -0.19 -2.79 5.88 -104.89 -0.62 -3.41 16 17 C 0.53 7.48 8.27 34.55 0.29 7.76 16 18 O -0.53 -8.74 17.12 -19.26 -0.33 -9.07 16 19 O -0.52 -5.46 12.66 -40.59 -0.51 -5.97 16 20 C -0.03 -0.52 9.56 -39.40 -0.38 -0.90 16 21 C -0.17 -2.65 9.41 -39.41 -0.37 -3.02 16 22 C 0.19 4.24 10.70 -16.82 -0.18 4.06 16 23 N -0.51 -13.13 7.86 -12.39 -0.10 -13.23 16 24 H 0.28 6.05 8.29 -40.82 -0.34 5.71 16 25 H 0.14 2.37 6.32 -52.49 -0.33 2.04 16 26 H 0.13 1.73 6.27 -52.49 -0.33 1.40 16 27 H 0.13 1.51 7.60 -52.49 -0.40 1.11 16 28 H 0.41 2.34 9.11 45.56 0.42 2.76 16 29 H 0.13 1.81 7.64 -52.49 -0.40 1.41 16 30 H 0.13 1.91 6.27 -52.49 -0.33 1.59 16 31 H 0.13 2.59 6.32 -52.49 -0.33 2.25 16 LS Contribution 283.46 15.07 4.27 4.27 Total: -1.00 -29.93 283.46 -7.47 -37.40 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -1.25 Total: 7.32 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -5.03 Total: -1.82 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.41 Total: -43.94 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.84 Total: -15.04 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.80 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.93 -7.47 -37.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236061403.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.678 kcal (2) G-P(sol) polarization free energy of solvation -29.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds