Wall clock time and date at job start Mon Mar 30 2020 01:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86803 * 119.99748 * 2 1 4 4 H 1.48495 * 109.47425 * 274.99037 * 3 2 1 5 5 H 1.48503 * 109.46913 * 34.98872 * 3 2 1 6 6 H 1.48498 * 109.47185 * 154.98653 * 3 2 1 7 7 C 1.40194 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99940 * 186.32230 * 7 2 1 9 9 C 1.41118 * 120.00234 * 6.32335 * 7 2 1 10 10 N 1.33638 * 119.12674 * 173.60400 * 9 7 2 11 11 C 1.31584 * 120.83110 * 179.97438 * 10 9 7 12 12 C 1.40468 * 119.08697 * 359.97438 * 11 10 9 13 13 C 1.47843 * 120.79207 * 180.02562 * 12 11 10 14 14 C 1.39793 * 119.99651 * 359.73256 * 13 12 11 15 15 C 1.37105 * 119.99926 * 179.71938 * 14 13 12 16 16 C 1.39815 * 119.99901 * 0.57493 * 15 14 13 17 17 C 1.47604 * 120.00668 * 179.67748 * 16 15 14 18 18 O 1.21488 * 120.00143 * 180.02562 * 17 16 15 19 19 O 1.34737 * 119.99740 * 0.02562 * 17 16 15 20 20 C 1.39824 * 119.99257 * 359.69532 * 16 15 14 21 21 C 1.37104 * 119.99688 * 0.02562 * 20 16 15 22 22 C 1.40469 * 118.41061 * 0.02562 * 12 11 10 23 23 N 1.31578 * 119.08848 * 359.97438 * 22 12 11 24 24 H 0.97001 * 120.00460 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.45348 * 180.02562 * 11 10 9 26 26 H 1.07995 * 120.00026 * 359.97438 * 14 13 12 27 27 H 1.07999 * 120.00072 * 180.26977 * 15 14 13 28 28 H 0.96706 * 117.00095 * 180.02562 * 19 17 16 29 29 H 1.07996 * 120.00060 * 179.97438 * 20 16 15 30 30 H 1.07996 * 119.99721 * 180.02562 * 21 20 16 31 31 H 1.08002 * 120.45355 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.3823 2.1074 -1.3947 5 1 1.4943 2.6199 0.8028 6 1 3.5865 1.4122 0.5920 7 6 2.0073 -1.2141 -0.0005 8 1 3.0824 -1.2169 0.1025 9 6 1.3083 -2.4325 -0.1357 10 7 2.0002 -3.5686 -0.2636 11 6 1.3826 -4.7235 -0.3913 12 6 -0.0218 -4.7506 -0.3912 13 6 -0.7541 -6.0272 -0.5316 14 6 -0.0487 -7.2259 -0.6722 15 6 -0.7277 -8.4104 -0.7967 16 6 -2.1259 -8.4182 -0.7951 17 6 -2.8571 -9.6926 -0.9362 18 8 -4.0720 -9.6992 -0.9352 19 8 -2.1772 -10.8486 -1.0660 20 6 -2.8314 -7.2186 -0.6601 21 6 -2.1521 -6.0348 -0.5299 22 6 -0.7137 -3.5358 -0.2545 23 7 -0.0281 -2.4195 -0.1313 24 1 -0.4851 0.8400 0.0004 25 1 1.9479 -5.6381 -0.4938 26 1 1.0312 -7.2193 -0.6786 27 1 -0.1827 -9.3369 -0.9009 28 1 -2.6996 -11.6574 -1.1559 29 1 -3.9113 -7.2244 -0.6593 30 1 -2.6970 -5.1083 -0.4253 31 1 -1.7935 -3.5183 -0.2507 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236061403.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:17 Heat of formation + Delta-G solvation = -46.318019 kcal Electronic energy + Delta-G solvation = -18636.689860 eV Core-core repulsion = 15460.883022 eV Total energy + Delta-G solvation = -3175.806839 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.40693 -40.90401 -39.37064 -37.03134 -35.90684 -34.03719 -33.71260 -32.01034 -30.91568 -28.28513 -25.49389 -25.12882 -23.54339 -22.77083 -21.79205 -19.88873 -19.10959 -18.51249 -17.89428 -17.16629 -16.93118 -16.58616 -16.32543 -15.55042 -15.20322 -15.08867 -14.52317 -14.47725 -14.30533 -13.86080 -13.70215 -13.23484 -13.13978 -12.98057 -12.71044 -12.54855 -11.97952 -11.89868 -11.67322 -11.47141 -11.25432 -11.08095 -10.68100 -9.97836 -9.34791 -9.13654 -8.56594 -6.79259 -0.51206 0.52172 0.70237 1.03686 1.39425 1.45859 1.56213 1.74201 2.15490 2.16067 2.62250 3.00027 3.80027 3.85945 3.86294 3.98404 4.01815 4.09204 4.26247 4.31733 4.48120 4.58513 4.86524 4.90456 5.00227 5.18596 5.21862 5.33784 5.43499 5.61749 5.70880 5.78652 5.95505 6.04594 6.40175 6.47910 7.03233 7.07889 8.09935 8.23168 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.058021 B = 0.003461 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.469935 B = 8087.801698 C = 8555.759294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.019 3.981 3 Si 1.003 2.997 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.253 1.253 7 C -0.407 4.407 8 H 0.097 0.903 9 C 0.350 3.650 10 N -0.618 5.618 11 C 0.183 3.817 12 C -0.330 4.330 13 C 0.057 3.943 14 C -0.160 4.160 15 C -0.035 4.035 16 C -0.183 4.183 17 C 0.538 3.462 18 O -0.556 6.556 19 O -0.504 6.504 20 C -0.042 4.042 21 C -0.162 4.162 22 C 0.169 3.831 23 N -0.542 5.542 24 H 0.290 0.710 25 H 0.172 0.828 26 H 0.144 0.856 27 H 0.159 0.841 28 H 0.431 0.569 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 -11.435 -1.469 11.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.206 4.206 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.176 1.176 7 C -0.440 4.440 8 H 0.115 0.885 9 C 0.117 3.883 10 N -0.337 5.337 11 C 0.009 3.991 12 C -0.340 4.340 13 C 0.055 3.945 14 C -0.178 4.178 15 C -0.053 4.053 16 C -0.184 4.184 17 C 0.386 3.614 18 O -0.450 6.450 19 O -0.317 6.317 20 C -0.060 4.060 21 C -0.180 4.180 22 C -0.006 4.006 23 N -0.259 5.259 24 H 0.102 0.898 25 H 0.189 0.811 26 H 0.162 0.838 27 H 0.177 0.823 28 H 0.293 0.707 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.867 -9.922 -1.302 10.180 hybrid contribution -0.792 -0.648 -0.135 1.033 sum -2.659 -10.570 -1.437 10.994 Atomic orbital electron populations 1.70142 1.09133 1.30502 1.25147 1.27209 0.95953 1.04946 0.92517 0.84877 0.78999 0.74304 0.79693 1.18465 1.18443 1.17623 1.19925 0.95849 0.89122 1.39118 0.88496 1.20378 0.86583 0.91907 0.89398 1.68692 1.41336 0.99495 1.24171 1.23387 0.91365 0.96111 0.88197 1.19995 0.95393 0.94324 1.24249 1.18986 0.92979 0.91841 0.90659 1.21229 1.01135 0.91067 1.04412 1.21348 0.92223 0.99001 0.92746 1.19078 0.94299 0.90408 1.14625 1.20842 0.84842 0.84725 0.71022 1.90852 1.16449 1.88184 1.49484 1.84525 1.44876 1.17946 1.84369 1.21031 1.00530 0.90616 0.93804 1.21083 0.93372 0.98527 1.05010 1.23590 1.00314 0.88096 0.88645 1.69321 1.08405 1.28216 1.19953 0.89848 0.81088 0.83819 0.82332 0.70673 0.84489 0.84870 0.82767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.64 11.43 21.86 0.25 -36.39 16 2 C 0.02 0.93 5.49 85.35 0.47 1.40 16 3 Si 1.00 35.32 29.57 68.60 2.03 37.34 16 4 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 5 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 6 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 7 C -0.41 -21.62 9.35 23.45 0.22 -21.40 16 8 H 0.10 4.93 7.86 -2.91 -0.02 4.91 16 9 C 0.35 19.29 7.35 134.92 0.99 20.28 16 10 N -0.62 -31.48 10.34 -193.12 -2.00 -33.48 16 11 C 0.18 7.78 10.70 85.27 0.91 8.69 16 12 C -0.33 -13.48 5.93 -19.65 -0.12 -13.60 16 13 C 0.06 1.89 5.89 -19.98 -0.12 1.78 16 14 C -0.16 -4.36 9.41 22.38 0.21 -4.15 16 15 C -0.04 -0.84 9.58 22.38 0.21 -0.62 16 16 C -0.18 -4.79 5.88 -20.04 -0.12 -4.91 16 17 C 0.54 13.19 8.27 70.29 0.58 13.77 16 18 O -0.56 -16.72 17.12 19.88 0.34 -16.38 16 19 O -0.50 -8.32 12.66 -56.48 -0.72 -9.03 16 20 C -0.04 -1.16 9.56 22.39 0.21 -0.95 16 21 C -0.16 -4.90 9.41 22.38 0.21 -4.69 16 22 C 0.17 7.72 10.70 85.27 0.91 8.63 16 23 N -0.54 -29.18 7.86 -193.13 -1.52 -30.70 16 24 H 0.29 12.88 8.29 -92.71 -0.77 12.11 16 25 H 0.17 5.70 6.32 -2.91 -0.02 5.68 16 26 H 0.14 3.38 6.27 -2.91 -0.02 3.36 16 27 H 0.16 2.85 7.60 -2.91 -0.02 2.83 16 28 H 0.43 2.99 9.11 -74.05 -0.67 2.31 16 29 H 0.14 3.58 7.64 -2.91 -0.02 3.55 16 30 H 0.13 3.84 6.27 -2.91 -0.02 3.82 16 31 H 0.16 6.08 6.32 -2.91 -0.02 6.06 16 Total: -1.00 -67.24 283.46 3.51 -63.73 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.54 Total: 20.67 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 4.58 Total: 4.23 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -3.26 Total: -100.57 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.38 Total: -25.42 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 2.03 Total: 37.34 kcal Total: -67.24 3.51 -63.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236061403.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.415 kcal (2) G-P(sol) polarization free energy of solvation -67.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds