Wall clock time and date at job start Mon Mar 30 2020 01:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86804 * 119.99758 * 2 1 4 4 H 1.48495 * 109.47265 * 89.99999 * 3 2 1 5 5 H 1.48501 * 109.47110 * 210.00578 * 3 2 1 6 6 H 1.48502 * 109.47356 * 329.99893 * 3 2 1 7 7 C 1.39926 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99647 * 17.31897 * 7 2 1 9 9 C 1.41044 * 119.99852 * 197.32658 * 7 2 1 10 10 C 1.40733 * 120.30914 * 28.51953 * 9 7 2 11 11 C 1.36446 * 119.95012 * 180.02562 * 10 9 7 12 12 C 1.38903 * 120.60076 * 0.02562 * 11 10 9 13 13 C 1.38165 * 120.62190 * 359.97438 * 12 11 10 14 14 C 1.38752 * 120.03128 * 359.71555 * 13 12 11 15 15 N 1.38726 * 120.30014 * 180.27829 * 14 13 12 16 16 S 1.65604 * 119.99884 * 35.39485 * 15 14 13 17 17 O 1.42093 * 104.27662 * 175.99382 * 16 15 14 18 18 O 1.42102 * 104.27355 * 303.84863 * 16 15 14 19 19 C 1.81395 * 104.45205 * 59.92067 * 16 15 14 20 20 C 1.53000 * 109.47081 * 180.02562 * 19 16 15 21 21 N 1.46901 * 109.47083 * 179.97438 * 20 19 16 22 22 H 0.97001 * 119.99686 * 175.51338 * 1 2 3 23 23 H 1.07999 * 120.02343 * 359.97438 * 10 9 7 24 24 H 1.08003 * 119.70016 * 180.02562 * 11 10 9 25 25 H 1.07991 * 119.69059 * 179.97438 * 12 11 10 26 26 H 1.07999 * 119.98466 * 179.97438 * 13 12 11 27 27 H 0.97001 * 120.00531 * 215.39280 * 15 14 13 28 28 H 1.09007 * 109.46825 * 300.00181 * 19 16 15 29 29 H 1.08999 * 109.47024 * 59.99750 * 19 16 15 30 30 H 1.08997 * 109.47173 * 299.99805 * 20 19 16 31 31 H 1.08995 * 109.47006 * 60.00270 * 20 19 16 32 32 H 1.00900 * 110.99803 * 56.04156 * 21 20 19 33 33 H 1.00897 * 111.00497 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4902 2.0465 1.4000 5 1 3.5403 1.4403 -0.7002 6 1 1.4402 2.6528 -0.7001 7 6 2.0085 -1.2118 -0.0005 8 1 1.5052 -2.1257 -0.2794 9 6 3.3709 -1.2395 0.3632 10 6 3.8863 -0.2848 1.2596 11 6 5.2056 -0.3181 1.6061 12 6 6.0502 -1.2881 1.0813 13 6 5.5699 -2.2370 0.1994 14 6 4.2313 -2.2312 -0.1658 15 7 3.7419 -3.1849 -1.0463 16 16 4.3385 -4.7293 -1.0097 17 8 3.5520 -5.4315 -1.9623 18 8 5.7387 -4.5684 -1.1915 19 6 3.9777 -5.3143 0.6690 20 6 4.4874 -6.7479 0.8301 21 7 4.1958 -7.2214 2.1897 22 1 -0.4850 -0.8375 -0.0657 23 1 3.2382 0.4742 1.6722 24 1 5.5968 0.4163 2.2946 25 1 7.0921 -1.3005 1.3653 26 1 6.2358 -2.9862 -0.2027 27 1 3.0503 -2.9472 -1.6835 28 1 4.4746 -4.6688 1.3933 29 1 2.9013 -5.2898 0.8388 30 1 3.9910 -7.3936 0.1058 31 1 5.5639 -6.7719 0.6605 32 1 3.2105 -7.1479 2.3946 33 1 4.5225 -8.1669 2.3213 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237700844.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:51 Heat of formation + Delta-G solvation = -81.329207 kcal Electronic energy + Delta-G solvation = -18943.611263 eV Core-core repulsion = 15901.730177 eV Total energy + Delta-G solvation = -3041.881086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.09697 -38.29233 -37.20066 -36.52939 -35.76915 -35.60536 -32.12489 -30.52569 -29.87337 -26.56375 -23.96471 -23.42034 -22.26249 -20.38594 -20.11410 -18.69021 -18.58965 -17.76565 -17.12487 -16.66365 -16.32381 -16.00781 -15.64459 -15.56313 -15.01558 -14.72188 -14.54529 -14.08674 -13.85201 -13.49666 -13.35428 -13.30021 -13.13471 -12.71870 -12.63315 -12.40246 -12.11854 -11.94998 -11.63744 -11.36886 -11.26310 -10.80919 -9.81905 -9.64498 -9.29400 -8.95107 -6.50566 -0.87163 0.80035 0.82866 1.40292 1.57974 1.62039 1.78386 2.19753 2.57753 2.65936 3.12448 3.45371 3.47215 3.62916 3.79529 4.22667 4.32512 4.40110 4.47655 4.49909 4.71998 4.90204 4.96403 5.05877 5.43258 5.51810 5.64043 5.87246 5.99567 6.00924 6.08343 6.18689 6.43569 6.48305 6.66951 6.84265 8.03496 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022003 B = 0.006844 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.266334 B = 4090.264279 C = 4435.858928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.011 3.989 3 Si 1.101 2.899 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.288 1.288 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.065 3.935 10 C -0.240 4.240 11 C -0.089 4.089 12 C -0.204 4.204 13 C -0.140 4.140 14 C 0.029 3.971 15 N -1.035 6.035 16 S 2.623 3.377 17 O -0.991 6.991 18 O -0.974 6.974 19 C -0.612 4.612 20 C 0.069 3.931 21 N -0.847 5.847 22 H 0.278 0.722 23 H 0.109 0.891 24 H 0.133 0.867 25 H 0.134 0.866 26 H 0.145 0.855 27 H 0.418 0.582 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.351 0.649 33 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.247 -8.078 3.356 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.203 4.203 3 Si 0.923 3.077 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.216 1.216 7 C -0.566 4.566 8 H 0.079 0.921 9 C 0.060 3.940 10 C -0.260 4.260 11 C -0.107 4.107 12 C -0.224 4.224 13 C -0.161 4.161 14 C -0.068 4.068 15 N -0.783 5.783 16 S 2.720 3.280 17 O -0.981 6.981 18 O -0.964 6.964 19 C -0.745 4.745 20 C -0.064 4.064 21 N -0.380 5.380 22 H 0.089 0.911 23 H 0.126 0.874 24 H 0.150 0.850 25 H 0.152 0.848 26 H 0.162 0.838 27 H 0.255 0.745 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.164 0.836 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.944 -6.469 2.964 10.664 hybrid contribution -1.761 -2.238 -0.326 2.866 sum 6.183 -8.706 2.638 11.000 Atomic orbital electron populations 1.70638 1.08588 1.32557 1.35087 1.28165 0.95745 1.06710 0.89648 0.83242 0.74696 0.70826 0.78922 1.18148 1.18715 1.21553 1.20434 0.95739 0.96341 1.44107 0.92089 1.17855 0.92506 0.92888 0.90795 1.21014 0.97201 1.03796 1.03939 1.20821 0.92964 0.98118 0.98846 1.20782 1.00097 0.98143 1.03369 1.21708 0.92663 1.01491 1.00266 1.17438 0.92034 0.98363 0.98964 1.52495 1.54989 1.25400 1.45466 1.04670 0.73872 0.72118 0.77372 1.93528 1.71536 1.73036 1.60032 1.93487 1.32452 1.84674 1.85761 1.30466 1.12558 1.07980 1.23463 1.21491 1.02075 0.90361 0.92478 1.58618 1.24311 1.30543 1.24560 0.91087 0.87374 0.84955 0.84767 0.83764 0.74533 0.83937 0.84173 0.92749 0.88836 0.83550 0.82474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.72 13.66 21.83 0.30 -44.42 16 2 C 0.01 0.58 5.42 85.24 0.46 1.04 16 3 Si 1.10 46.83 24.88 68.60 1.71 48.53 16 4 H -0.26 -9.93 6.44 99.48 0.64 -9.29 16 5 H -0.26 -11.08 7.01 99.48 0.70 -10.39 16 6 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.54 -27.23 8.75 23.37 0.20 -27.02 16 8 H 0.06 3.19 7.60 -2.91 -0.02 3.16 16 9 C 0.07 3.07 5.16 -21.17 -0.11 2.96 16 10 C -0.24 -10.44 7.20 22.46 0.16 -10.27 16 11 C -0.09 -3.31 9.96 22.01 0.22 -3.09 16 12 C -0.20 -7.39 10.04 22.41 0.22 -7.17 16 13 C -0.14 -5.49 9.24 22.38 0.21 -5.28 16 14 C 0.03 1.23 6.14 38.99 0.24 1.47 16 15 N -1.03 -39.86 5.26 -50.39 -0.27 -40.13 16 16 S 2.62 86.16 5.22 -56.49 -0.29 85.86 16 17 O -0.99 -36.48 18.08 -127.65 -2.31 -38.79 16 18 O -0.97 -35.38 15.05 -127.65 -1.92 -37.30 16 19 C -0.61 -16.28 6.15 71.98 0.44 -15.84 16 20 C 0.07 1.49 6.79 86.30 0.59 2.08 16 21 N -0.85 -15.91 9.62 -186.72 -1.80 -17.70 16 22 H 0.28 14.56 8.73 -92.71 -0.81 13.75 16 23 H 0.11 4.66 4.33 -2.91 -0.01 4.65 16 24 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 25 H 0.13 3.96 8.06 -2.92 -0.02 3.94 16 26 H 0.15 5.43 5.18 -2.91 -0.02 5.42 16 27 H 0.42 16.27 8.10 -96.75 -0.78 15.49 16 28 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16 29 H 0.14 3.49 8.14 -2.39 -0.02 3.47 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.35 5.90 8.99 -89.69 -0.81 5.09 16 33 H 0.36 4.84 9.08 -89.70 -0.81 4.02 16 Total: -1.00 -62.93 287.86 -3.29 -66.21 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -1.34 Total: 38.86 kcal Atomic # 6 Polarization: -63.76 SS G_CDS: 2.64 Total: -61.12 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -1.76 Total: -102.25 kcal Atomic # 8 Polarization: -71.86 SS G_CDS: -4.23 Total: -76.09 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.71 Total: 48.53 kcal Atomic # 16 Polarization: 86.16 SS G_CDS: -0.29 Total: 85.86 kcal Total: -62.93 -3.29 -66.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237700844.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.115 kcal (2) G-P(sol) polarization free energy of solvation -62.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds