Wall clock time and date at job start Mon Mar 30 2020 01:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00340 * 2 1 4 4 H 1.48499 * 109.46997 * 270.00205 * 3 2 1 5 5 H 1.48499 * 109.46833 * 29.99944 * 3 2 1 6 6 H 1.48500 * 109.47278 * 150.00068 * 3 2 1 7 7 C 1.37882 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.53512 * 114.16936 * 180.02562 * 9 7 2 11 11 N 1.47477 * 87.93306 * 220.13822 * 10 9 7 12 12 C 1.46900 * 110.99864 * 138.70383 * 11 10 9 13 13 C 1.50703 * 109.47001 * 170.00220 * 12 11 10 14 14 C 1.38090 * 120.39669 * 259.97818 * 13 12 11 15 15 N 1.31927 * 120.80838 * 180.02562 * 14 13 12 16 16 C 1.32084 * 121.72407 * 359.97438 * 15 14 13 17 17 F 1.35103 * 119.64220 * 179.97438 * 16 15 14 18 18 C 1.38459 * 120.71329 * 0.02562 * 16 15 14 19 19 C 1.38690 * 119.12372 * 359.97438 * 18 16 15 20 20 Cl 1.73597 * 120.78725 * 179.97438 * 19 18 16 21 21 C 1.47481 * 87.83408 * 27.00979 * 11 10 9 22 22 H 0.97000 * 119.99606 * 359.97438 * 1 2 3 23 23 H 1.09004 * 113.25433 * 312.95165 * 9 7 2 24 24 H 1.09004 * 113.47180 * 105.36914 * 10 9 7 25 25 H 1.09004 * 113.53323 * 334.91805 * 10 9 7 26 26 H 1.09001 * 109.47283 * 50.00460 * 12 11 10 27 27 H 1.09000 * 109.47061 * 290.00046 * 12 11 10 28 28 H 1.08001 * 119.59429 * 0.02562 * 14 13 12 29 29 H 1.07995 * 120.43534 * 179.97438 * 18 16 15 30 30 H 1.09001 * 113.47542 * 87.75580 * 21 11 10 31 31 H 1.08998 * 113.47837 * 218.22204 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.1496 -3.7438 -0.0005 11 7 1.2049 -4.3602 -0.9506 12 6 1.9205 -5.0902 -2.0056 13 6 0.9383 -5.9038 -2.8083 14 6 0.7908 -7.2559 -2.5692 15 7 -0.0662 -7.9760 -3.2673 16 6 -0.8133 -7.4400 -4.2155 17 9 -1.6771 -8.2170 -4.9050 18 6 -0.7200 -6.0905 -4.5113 19 6 0.1706 -5.3030 -3.7971 20 17 0.3232 -3.6066 -4.1325 21 6 0.8517 -2.9993 -1.3958 22 1 -0.4849 0.8401 0.0004 23 1 0.4451 -2.5308 0.7328 24 1 2.1889 -4.2509 0.9636 25 1 3.1382 -3.5668 -0.4242 26 1 2.6574 -5.7536 -1.5528 27 1 2.4250 -4.3800 -2.6607 28 1 1.3844 -7.7296 -1.8013 29 1 -1.3328 -5.6570 -5.2878 30 1 1.4936 -2.6227 -2.1922 31 1 -0.2089 -2.8755 -1.6144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238022538.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:50 Heat of formation + Delta-G solvation = 26.539971 kcal Electronic energy + Delta-G solvation = -17979.741353 eV Core-core repulsion = 14817.033813 eV Total energy + Delta-G solvation = -3162.707539 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.15796 -40.41443 -38.83041 -36.73028 -33.48299 -32.43561 -31.92361 -28.67186 -25.79996 -24.95489 -24.02396 -23.40163 -21.40405 -18.76873 -18.32870 -17.67558 -16.73385 -16.24457 -15.65958 -15.09964 -14.97765 -14.45248 -14.29173 -14.08418 -13.65251 -13.36067 -13.28202 -12.70068 -12.10811 -11.98942 -11.73660 -11.35010 -11.01533 -10.83849 -10.67273 -10.37638 -10.03847 -9.80563 -9.56200 -9.46873 -8.95993 -8.86548 -8.44151 -8.10579 -6.09197 -4.13872 0.70387 0.77677 1.87771 3.25312 3.31787 3.33186 3.35652 3.41896 4.34447 4.36334 4.51153 4.54900 4.99524 5.07847 5.12971 5.22046 5.47080 5.51373 5.75141 5.86769 6.02980 6.25883 6.33701 6.40929 6.61131 6.63897 7.06645 7.12025 7.42070 7.68112 7.84059 7.97235 8.32364 8.89251 9.51295 11.00288 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.034776 B = 0.004812 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.969220 B = 5816.911175 C = 6248.293108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.039 3.961 10 C -0.004 4.004 11 N -0.480 5.480 12 C 0.056 3.944 13 C -0.111 4.111 14 C 0.159 3.841 15 N -0.511 5.511 16 C 0.309 3.691 17 F -0.111 7.111 18 C -0.189 4.189 19 C 0.036 3.964 20 Cl -0.018 7.018 21 C 0.008 3.992 22 H 0.262 0.738 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.176 0.824 29 H 0.155 0.845 30 H 0.059 0.941 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 -11.085 -8.326 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.020 3.980 10 C -0.132 4.132 11 N -0.202 5.202 12 C -0.073 4.073 13 C -0.115 4.115 14 C 0.002 3.998 15 N -0.225 5.225 16 C 0.156 3.844 17 F -0.090 7.090 18 C -0.211 4.211 19 C 0.000 4.000 20 Cl 0.011 6.989 21 C -0.121 4.121 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.193 0.807 29 H 0.173 0.827 30 H 0.077 0.923 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.574 -12.212 -8.012 14.617 hybrid contribution 0.869 2.212 -0.869 2.531 sum 1.443 -10.000 -8.881 13.452 Atomic orbital electron populations 1.69964 1.05984 1.26761 1.49482 1.25005 0.94792 0.99115 0.94586 0.86647 0.79998 0.83546 0.78140 1.20686 1.21123 1.19776 1.21010 0.92713 0.90197 1.51578 0.92411 1.20126 0.94281 0.90783 0.92824 1.24033 0.95743 0.97693 0.95764 1.68979 1.26999 1.14686 1.09550 1.21601 0.93509 0.97595 0.94628 1.20884 0.99151 0.95481 0.95947 1.22423 0.92826 0.89255 0.95324 1.67044 1.07354 1.41200 1.06940 1.17868 0.89784 0.85769 0.91014 1.91627 1.65930 1.75261 1.76142 1.21656 1.02533 0.92647 1.04245 1.21066 0.95772 0.87688 0.95453 1.98464 1.96402 1.09882 1.94138 1.24271 1.00490 0.86155 1.01178 0.92846 0.91823 0.91726 0.92570 0.89974 0.92057 0.80725 0.82684 0.92299 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.98 13.26 55.43 0.74 -24.25 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -13.57 8.83 -34.44 -0.30 -13.87 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.04 0.94 3.76 -91.24 -0.34 0.59 16 10 C 0.00 -0.08 7.24 -7.56 -0.05 -0.13 16 11 N -0.48 -8.93 6.32 -246.11 -1.55 -10.48 16 12 C 0.06 0.83 4.69 -4.97 -0.02 0.80 16 13 C -0.11 -1.56 5.48 -104.45 -0.57 -2.13 16 14 C 0.16 2.03 10.82 -17.57 -0.19 1.84 16 15 N -0.51 -7.17 10.37 -13.61 -0.14 -7.31 16 16 C 0.31 4.17 8.41 -17.36 -0.15 4.03 16 17 F -0.11 -1.44 17.29 2.25 0.04 -1.40 16 18 C -0.19 -2.39 9.91 -39.33 -0.39 -2.78 16 19 C 0.04 0.50 6.36 -39.19 -0.25 0.25 16 20 Cl -0.02 -0.28 23.91 -51.86 -1.24 -1.52 16 21 C 0.01 0.17 5.17 -7.56 -0.04 0.13 16 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 23 H 0.06 1.70 8.11 -51.93 -0.42 1.28 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.06 1.05 7.87 -51.93 -0.41 0.65 16 26 H 0.08 1.03 7.95 -51.93 -0.41 0.61 16 27 H 0.06 0.94 6.62 -51.93 -0.34 0.60 16 28 H 0.18 1.73 8.04 -52.49 -0.42 1.31 16 29 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.06 1.27 6.18 -51.93 -0.32 0.95 16 31 H 0.06 1.49 7.72 -51.93 -0.40 1.09 16 LS Contribution 282.97 15.07 4.26 4.26 Total: -1.00 -28.09 282.97 -8.45 -36.53 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -3.12 Total: -1.85 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.41 Total: -9.54 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: -0.96 Total: -42.04 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.24 Total: -1.52 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.09 -8.45 -36.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238022538.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.075 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds