Wall clock time and date at job start Mon Mar 30 2020 01:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00340 * 2 1 4 4 H 1.48499 * 109.46997 * 270.00205 * 3 2 1 5 5 H 1.48499 * 109.46833 * 29.99944 * 3 2 1 6 6 H 1.48500 * 109.47278 * 150.00068 * 3 2 1 7 7 C 1.37882 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.53512 * 114.16936 * 180.02562 * 9 7 2 11 11 N 1.47477 * 87.93306 * 220.13822 * 10 9 7 12 12 C 1.46900 * 110.99864 * 138.70383 * 11 10 9 13 13 C 1.50703 * 109.47001 * 170.00220 * 12 11 10 14 14 C 1.38090 * 120.39669 * 259.97818 * 13 12 11 15 15 N 1.31927 * 120.80838 * 180.02562 * 14 13 12 16 16 C 1.32084 * 121.72407 * 359.97438 * 15 14 13 17 17 F 1.35103 * 119.64220 * 179.97438 * 16 15 14 18 18 C 1.38459 * 120.71329 * 0.02562 * 16 15 14 19 19 C 1.38690 * 119.12372 * 359.97438 * 18 16 15 20 20 Cl 1.73597 * 120.78725 * 179.97438 * 19 18 16 21 21 C 1.47481 * 87.83408 * 27.00979 * 11 10 9 22 22 H 0.97000 * 119.99606 * 359.97438 * 1 2 3 23 23 H 1.09004 * 113.25433 * 312.95165 * 9 7 2 24 24 H 1.09004 * 113.47180 * 105.36914 * 10 9 7 25 25 H 1.09004 * 113.53323 * 334.91805 * 10 9 7 26 26 H 1.09001 * 109.47283 * 50.00460 * 12 11 10 27 27 H 1.09000 * 109.47061 * 290.00046 * 12 11 10 28 28 H 1.08001 * 119.59429 * 0.02562 * 14 13 12 29 29 H 1.07995 * 120.43534 * 179.97438 * 18 16 15 30 30 H 1.09001 * 113.47542 * 87.75580 * 21 11 10 31 31 H 1.08998 * 113.47837 * 218.22204 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.1496 -3.7438 -0.0005 11 7 1.2049 -4.3602 -0.9506 12 6 1.9205 -5.0902 -2.0056 13 6 0.9383 -5.9038 -2.8083 14 6 0.7908 -7.2559 -2.5692 15 7 -0.0662 -7.9760 -3.2673 16 6 -0.8133 -7.4400 -4.2155 17 9 -1.6771 -8.2170 -4.9050 18 6 -0.7200 -6.0905 -4.5113 19 6 0.1706 -5.3030 -3.7971 20 17 0.3232 -3.6066 -4.1325 21 6 0.8517 -2.9993 -1.3958 22 1 -0.4849 0.8401 0.0004 23 1 0.4451 -2.5308 0.7328 24 1 2.1889 -4.2509 0.9636 25 1 3.1382 -3.5668 -0.4242 26 1 2.6574 -5.7536 -1.5528 27 1 2.4250 -4.3800 -2.6607 28 1 1.3844 -7.7296 -1.8013 29 1 -1.3328 -5.6570 -5.2878 30 1 1.4936 -2.6227 -2.1922 31 1 -0.2089 -2.8755 -1.6144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238022538.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:49 Heat of formation + Delta-G solvation = 8.037180 kcal Electronic energy + Delta-G solvation = -17980.543694 eV Core-core repulsion = 14817.033813 eV Total energy + Delta-G solvation = -3163.509880 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.19223 -41.54155 -40.34834 -37.86887 -35.03144 -33.98454 -33.07348 -30.19132 -27.43905 -26.56665 -25.09811 -24.87270 -22.70710 -20.49283 -19.36896 -18.84511 -18.52271 -17.30615 -16.92549 -16.72464 -16.15930 -16.01974 -15.70557 -15.34473 -14.76328 -14.64124 -14.54961 -13.98433 -13.83364 -13.26113 -13.25894 -12.99679 -12.82903 -12.41555 -12.13154 -11.96396 -11.61238 -11.24028 -10.98527 -10.81605 -10.68347 -10.40183 -10.04068 -9.64511 -8.12637 -6.23036 -0.35052 -0.26300 0.77124 1.42817 1.44672 1.54233 2.27189 2.40024 2.44093 3.17322 3.31999 3.38565 3.51989 3.60485 4.01397 4.06938 4.30373 4.43687 4.46001 4.59202 4.65192 4.73722 4.83596 4.93141 5.03333 5.31842 5.33452 5.51009 5.66657 5.88948 6.31774 6.37984 6.40864 6.86953 7.45341 8.96965 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.034776 B = 0.004812 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.969220 B = 5816.911175 C = 6248.293108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.012 3.988 10 C 0.013 3.987 11 N -0.479 5.479 12 C 0.057 3.943 13 C -0.122 4.122 14 C 0.169 3.831 15 N -0.526 5.526 16 C 0.305 3.695 17 F -0.109 7.109 18 C -0.183 4.183 19 C 0.025 3.975 20 Cl -0.034 7.034 21 C 0.027 3.973 22 H 0.261 0.739 23 H 0.026 0.974 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.058 0.942 28 H 0.207 0.793 29 H 0.175 0.825 30 H 0.058 0.942 31 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.703 -12.085 -8.680 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.564 4.564 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.115 4.115 11 N -0.201 5.201 12 C -0.071 4.071 13 C -0.125 4.125 14 C 0.011 3.989 15 N -0.240 5.240 16 C 0.152 3.848 17 F -0.088 7.088 18 C -0.205 4.205 19 C -0.010 4.010 20 Cl -0.004 7.004 21 C -0.102 4.102 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.133 0.867 27 H 0.077 0.923 28 H 0.223 0.777 29 H 0.193 0.807 30 H 0.076 0.924 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.934 -13.230 -8.371 15.775 hybrid contribution 0.427 2.425 -0.768 2.579 sum 2.361 -10.805 -9.139 14.347 Atomic orbital electron populations 1.70096 1.07522 1.27384 1.51102 1.25779 0.95493 1.02518 0.94530 0.85653 0.78943 0.79448 0.78219 1.20215 1.21262 1.18756 1.21381 0.93054 0.91362 1.50618 0.92037 1.20108 0.94682 0.92276 0.93616 1.23843 0.95465 0.95262 0.96915 1.68867 1.27614 1.13117 1.10495 1.21639 0.93990 0.97754 0.93767 1.20893 0.99419 0.96040 0.96152 1.22869 0.92208 0.88638 0.95145 1.67107 1.07866 1.41665 1.07375 1.17993 0.89762 0.86018 0.91018 1.91631 1.65879 1.75226 1.76105 1.21783 1.02171 0.92238 1.04324 1.21221 0.96524 0.87075 0.96163 1.98461 1.96506 1.11203 1.94244 1.23908 0.98912 0.87965 0.99397 0.93033 0.95582 0.90288 0.91272 0.86677 0.92335 0.77681 0.80730 0.92410 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.31 13.26 21.45 0.28 -53.02 16 2 C 0.02 0.87 5.46 84.66 0.46 1.33 16 3 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 7 C -0.53 -27.66 8.83 25.60 0.23 -27.43 16 8 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.01 0.60 3.76 -11.20 -0.04 0.56 16 10 C 0.01 0.50 7.24 83.57 0.61 1.11 16 11 N -0.48 -17.09 6.32 -932.57 -5.89 -22.98 16 12 C 0.06 1.55 4.69 85.56 0.40 1.95 16 13 C -0.12 -3.13 5.48 -19.75 -0.11 -3.24 16 14 C 0.17 3.80 10.82 84.64 0.92 4.72 16 15 N -0.53 -13.55 10.37 -196.98 -2.04 -15.59 16 16 C 0.31 7.69 8.41 84.71 0.71 8.40 16 17 F -0.11 -2.68 17.29 44.97 0.78 -1.90 16 18 C -0.18 -4.35 9.91 22.43 0.22 -4.13 16 19 C 0.03 0.68 6.36 22.53 0.14 0.83 16 20 Cl -0.03 -1.00 23.91 -2.72 -0.07 -1.06 16 21 C 0.03 1.18 5.17 83.57 0.43 1.61 16 22 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 23 H 0.03 1.44 8.11 -2.38 -0.02 1.42 16 24 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 25 H 0.07 2.41 7.87 -2.38 -0.02 2.39 16 26 H 0.12 2.39 7.95 -2.39 -0.02 2.38 16 27 H 0.06 1.66 6.62 -2.39 -0.02 1.65 16 28 H 0.21 3.22 8.04 -2.91 -0.02 3.20 16 29 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.06 2.48 6.18 -2.39 -0.01 2.47 16 31 H 0.04 1.92 7.72 -2.39 -0.02 1.91 16 Total: -1.00 -60.42 282.97 0.22 -60.20 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 1.16 Total: 4.39 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 3.97 Total: -14.30 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -7.65 Total: -91.60 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.78 Total: -1.90 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.07 Total: -1.06 kcal Total: -60.42 0.22 -60.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238022538.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.239 kcal (2) G-P(sol) polarization free energy of solvation -60.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds