Wall clock time and date at job start Mon Mar 30 2020 01:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00267 * 2 1 4 4 H 1.48496 * 109.46534 * 269.98961 * 3 2 1 5 5 H 1.48495 * 109.47082 * 29.99348 * 3 2 1 6 6 H 1.48502 * 109.46784 * 149.99616 * 3 2 1 7 7 C 1.37883 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00010 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99921 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40227 * 304.70532 * 9 7 2 11 11 O 1.42109 * 106.40216 * 77.62305 * 9 7 2 12 12 N 1.65595 * 107.21825 * 191.16173 * 9 7 2 13 13 C 1.46500 * 120.00094 * 63.61337 * 12 9 7 14 14 H 1.08997 * 109.46809 * 335.46715 * 13 12 9 15 15 C 1.53001 * 109.46898 * 215.47402 * 13 12 9 16 16 N 1.46897 * 109.47267 * 56.11297 * 15 13 12 17 17 C 1.50697 * 109.47098 * 95.47125 * 13 12 9 18 18 C 1.38237 * 120.00085 * 39.73032 * 17 13 12 19 19 C 1.38230 * 119.99684 * 179.78507 * 18 17 13 20 20 C 1.38232 * 120.00258 * 0.43908 * 19 18 17 21 21 C 1.38232 * 120.00190 * 359.81692 * 20 19 18 22 22 C 1.38237 * 119.99627 * 219.99859 * 17 13 12 23 23 H 0.97007 * 119.99680 * 0.02562 * 1 2 3 24 24 H 0.97004 * 119.99739 * 243.61303 * 12 9 7 25 25 H 1.09004 * 109.46932 * 176.10893 * 15 13 12 26 26 H 1.08999 * 109.47049 * 296.10954 * 15 13 12 27 27 H 1.00897 * 111.00136 * 61.37127 * 16 15 13 28 28 H 1.00908 * 111.00134 * 185.32422 * 16 15 13 29 29 H 1.08001 * 119.99584 * 359.97438 * 18 17 13 30 30 H 1.07999 * 119.99884 * 180.27193 * 19 18 17 31 31 H 1.07998 * 120.00091 * 179.83338 * 20 19 18 32 32 H 1.07997 * 120.00371 * 180.02562 * 21 20 19 33 33 H 1.07997 * 120.00659 * 359.97438 * 22 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0461 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.2502 -2.6791 1.1209 11 8 0.6702 -2.9217 -1.3312 12 7 2.2220 -3.9204 0.3074 13 6 2.9282 -3.9566 1.5905 14 1 2.9578 -2.9541 2.0173 15 6 4.3563 -4.4605 1.3726 16 7 5.0294 -3.6108 0.3812 17 6 2.2070 -4.8836 2.5348 18 6 1.6744 -6.0701 2.0664 19 6 1.0168 -6.9224 2.9335 20 6 0.8838 -6.5840 4.2671 21 6 1.4117 -5.3950 4.7345 22 6 2.0732 -4.5447 3.8683 23 1 -0.4850 0.8401 -0.0004 24 1 2.3980 -4.5996 -0.3624 25 1 4.9029 -4.4221 2.3149 26 1 4.3277 -5.4883 1.0107 27 1 5.0885 -2.6565 0.7034 28 1 5.9435 -3.9734 0.1552 29 1 1.7748 -6.3326 1.0235 30 1 0.6045 -7.8515 2.5684 31 1 0.3676 -7.2486 4.9440 32 1 1.3082 -5.1308 5.7765 33 1 2.4859 -3.6159 4.2335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238911328.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:48 Heat of formation + Delta-G solvation = -68.748881 kcal Electronic energy + Delta-G solvation = -19050.199430 eV Core-core repulsion = 16008.863867 eV Total energy + Delta-G solvation = -3041.335562 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.18710 -36.18355 -35.02001 -33.79938 -33.04030 -32.48981 -30.70277 -30.23751 -26.40979 -26.03696 -22.70460 -22.19375 -20.41549 -18.90399 -17.31824 -16.84432 -16.05464 -15.96161 -15.35383 -14.94133 -14.57830 -14.22812 -13.90562 -13.74335 -13.21471 -13.06325 -12.98551 -12.76278 -12.21751 -11.93608 -11.20116 -11.15756 -11.13465 -10.97108 -10.66362 -10.57124 -10.28133 -10.12075 -10.02252 -9.17977 -8.95472 -8.61689 -8.55093 -8.39222 -8.31643 -6.61104 -5.22086 1.64089 1.71376 2.49900 3.10016 3.17152 3.21997 4.04908 4.12538 4.65197 4.71933 4.87197 5.15807 5.20093 5.24481 5.37050 5.42575 5.49821 5.68735 5.81496 5.85621 5.99180 6.08060 6.26961 6.32735 6.60386 6.74265 6.76659 6.83831 7.09750 7.28761 7.31512 7.42422 7.64304 8.08271 8.09597 8.97411 10.31999 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.006957 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.669889 B = 4023.596737 C = 4266.041128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.132 3.868 3 Si 0.918 3.082 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.264 1.264 7 C -1.016 5.016 8 H 0.105 0.895 9 S 2.713 3.287 10 O -0.997 6.997 11 O -1.017 7.017 12 N -1.113 6.113 13 C 0.203 3.797 14 H 0.095 0.905 15 C 0.065 3.935 16 N -0.841 5.841 17 C -0.083 4.083 18 C -0.101 4.101 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.104 4.104 23 H 0.288 0.712 24 H 0.402 0.598 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.346 0.654 28 H 0.337 0.663 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.583 -9.223 7.221 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.086 4.086 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.188 1.188 7 C -1.150 5.150 8 H 0.123 0.877 9 S 2.813 3.187 10 O -0.987 6.987 11 O -1.008 7.008 12 N -0.865 5.865 13 C 0.094 3.906 14 H 0.113 0.887 15 C -0.068 4.068 16 N -0.371 5.371 17 C -0.085 4.085 18 C -0.120 4.120 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.140 4.140 22 C -0.123 4.123 23 H 0.099 0.901 24 H 0.233 0.767 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.159 0.841 28 H 0.149 0.851 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.825 -9.331 6.729 13.376 hybrid contribution 1.660 1.139 0.526 2.080 sum 8.485 -8.192 7.254 13.847 Atomic orbital electron populations 1.69943 1.06734 1.30393 1.40241 1.24756 0.94397 1.00697 0.88762 0.86215 0.80070 0.80399 0.79098 1.19305 1.20217 1.18792 1.30603 1.06237 1.11775 1.66382 0.87714 1.00441 0.72278 0.73367 0.72602 1.93378 1.64011 1.87279 1.53993 1.93369 1.80500 1.87215 1.39697 1.55844 1.61954 1.46425 1.22286 1.19396 0.89729 0.98140 0.83357 0.88706 1.22004 0.93619 0.97572 0.93598 1.58475 1.25374 1.06262 1.47008 1.20364 0.98564 0.95336 0.94284 1.20935 0.97661 0.93876 0.99487 1.21078 0.99811 0.99678 0.93783 1.21052 1.00521 0.97233 0.95774 1.21050 0.98771 0.94742 0.99471 1.21024 0.99040 0.99189 0.93063 0.90125 0.76747 0.94935 0.90793 0.84113 0.85099 0.86224 0.86479 0.86637 0.86402 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.04 12.85 55.43 0.71 -24.33 16 2 C 0.13 3.67 5.46 -17.82 -0.10 3.57 16 3 Si 0.92 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 7 C -1.02 -27.70 9.49 30.60 0.29 -27.41 16 8 H 0.10 2.59 7.81 -52.49 -0.41 2.17 16 9 S 2.71 72.49 5.06 -107.50 -0.54 71.95 16 10 O -1.00 -29.48 17.38 -57.17 -0.99 -30.48 16 11 O -1.02 -30.46 18.02 -57.17 -1.03 -31.49 16 12 N -1.11 -22.11 4.51 -5.88 -0.03 -22.14 16 13 C 0.20 3.46 2.65 -69.08 -0.18 3.27 16 14 H 0.10 1.72 7.64 -51.93 -0.40 1.33 16 15 C 0.06 0.84 6.36 -3.83 -0.02 0.82 16 16 N -0.84 -11.00 9.34 -10.37 -0.10 -11.10 16 17 C -0.08 -1.38 4.96 -104.62 -0.52 -1.90 16 18 C -0.10 -1.59 9.33 -39.58 -0.37 -1.96 16 19 C -0.13 -1.76 10.05 -39.59 -0.40 -2.16 16 20 C -0.13 -1.71 10.05 -39.59 -0.40 -2.11 16 21 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 22 C -0.10 -1.64 9.67 -39.58 -0.38 -2.02 16 23 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 24 H 0.40 7.14 8.62 -34.46 -0.30 6.84 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.35 4.57 9.05 -39.29 -0.36 4.22 16 28 H 0.34 3.44 9.08 -39.29 -0.36 3.09 16 29 H 0.12 1.73 7.54 -52.49 -0.40 1.34 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.12 1.72 8.04 -52.49 -0.42 1.30 16 LS Contribution 302.62 15.07 4.56 4.56 Total: -1.00 -36.20 302.62 -8.80 -45.00 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -3.88 Total: 14.50 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: -2.48 Total: -31.99 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.59 Total: -57.57 kcal Atomic # 8 Polarization: -59.94 SS G_CDS: -2.02 Total: -61.96 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 72.49 SS G_CDS: -0.54 Total: 71.95 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -36.20 -8.80 -45.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238911328.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.749 kcal (2) G-P(sol) polarization free energy of solvation -36.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds