Wall clock time and date at job start Mon Mar 30 2020 01:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00267 * 2 1 4 4 H 1.48496 * 109.46534 * 269.98961 * 3 2 1 5 5 H 1.48495 * 109.47082 * 29.99348 * 3 2 1 6 6 H 1.48502 * 109.46784 * 149.99616 * 3 2 1 7 7 C 1.37883 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00010 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99921 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40227 * 304.70532 * 9 7 2 11 11 O 1.42109 * 106.40216 * 77.62305 * 9 7 2 12 12 N 1.65595 * 107.21825 * 191.16173 * 9 7 2 13 13 C 1.46500 * 120.00094 * 63.61337 * 12 9 7 14 14 H 1.08997 * 109.46809 * 335.46715 * 13 12 9 15 15 C 1.53001 * 109.46898 * 215.47402 * 13 12 9 16 16 N 1.46897 * 109.47267 * 56.11297 * 15 13 12 17 17 C 1.50697 * 109.47098 * 95.47125 * 13 12 9 18 18 C 1.38237 * 120.00085 * 39.73032 * 17 13 12 19 19 C 1.38230 * 119.99684 * 179.78507 * 18 17 13 20 20 C 1.38232 * 120.00258 * 0.43908 * 19 18 17 21 21 C 1.38232 * 120.00190 * 359.81692 * 20 19 18 22 22 C 1.38237 * 119.99627 * 219.99859 * 17 13 12 23 23 H 0.97007 * 119.99680 * 0.02562 * 1 2 3 24 24 H 0.97004 * 119.99739 * 243.61303 * 12 9 7 25 25 H 1.09004 * 109.46932 * 176.10893 * 15 13 12 26 26 H 1.08999 * 109.47049 * 296.10954 * 15 13 12 27 27 H 1.00897 * 111.00136 * 61.37127 * 16 15 13 28 28 H 1.00908 * 111.00134 * 185.32422 * 16 15 13 29 29 H 1.08001 * 119.99584 * 359.97438 * 18 17 13 30 30 H 1.07999 * 119.99884 * 180.27193 * 19 18 17 31 31 H 1.07998 * 120.00091 * 179.83338 * 20 19 18 32 32 H 1.07997 * 120.00371 * 180.02562 * 21 20 19 33 33 H 1.07997 * 120.00659 * 359.97438 * 22 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0461 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.2502 -2.6791 1.1209 11 8 0.6702 -2.9217 -1.3312 12 7 2.2220 -3.9204 0.3074 13 6 2.9282 -3.9566 1.5905 14 1 2.9578 -2.9541 2.0173 15 6 4.3563 -4.4605 1.3726 16 7 5.0294 -3.6108 0.3812 17 6 2.2070 -4.8836 2.5348 18 6 1.6744 -6.0701 2.0664 19 6 1.0168 -6.9224 2.9335 20 6 0.8838 -6.5840 4.2671 21 6 1.4117 -5.3950 4.7345 22 6 2.0732 -4.5447 3.8683 23 1 -0.4850 0.8401 -0.0004 24 1 2.3980 -4.5996 -0.3624 25 1 4.9029 -4.4221 2.3149 26 1 4.3277 -5.4883 1.0107 27 1 5.0885 -2.6565 0.7034 28 1 5.9435 -3.9734 0.1552 29 1 1.7748 -6.3326 1.0235 30 1 0.6045 -7.8515 2.5684 31 1 0.3676 -7.2486 4.9440 32 1 1.3082 -5.1308 5.7765 33 1 2.4859 -3.6159 4.2335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238911328.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:47 Heat of formation + Delta-G solvation = -98.918265 kcal Electronic energy + Delta-G solvation = -19051.507672 eV Core-core repulsion = 16008.863867 eV Total energy + Delta-G solvation = -3042.643805 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34775 -37.49881 -37.17701 -36.02879 -35.12373 -33.74296 -31.87092 -31.49386 -28.18446 -27.62264 -23.82934 -23.32093 -21.66590 -20.94050 -19.23407 -18.22163 -17.89648 -17.30689 -16.88080 -16.46302 -15.89952 -15.76301 -15.53900 -15.27415 -14.61237 -14.35259 -14.17694 -13.99140 -13.87121 -13.40277 -13.18882 -12.98090 -12.53576 -12.41902 -12.29486 -12.26078 -12.13557 -12.02540 -11.77101 -11.20372 -10.91637 -10.19638 -9.72925 -9.57258 -9.42412 -8.67919 -7.39615 0.39863 0.58436 0.59648 1.36158 1.38050 1.52632 2.24646 2.63981 2.89332 3.15476 3.58012 3.80565 3.98374 4.15885 4.16175 4.28585 4.34079 4.36636 4.56070 4.67087 4.74275 4.76425 4.92055 5.12818 5.17941 5.27544 5.37779 5.63490 5.67218 5.83305 6.01422 6.20333 6.32397 6.52166 6.74572 6.85547 8.27358 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.006957 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.669889 B = 4023.596737 C = 4266.041128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.241 1.241 7 C -1.030 5.030 8 H 0.125 0.875 9 S 2.718 3.282 10 O -1.034 7.034 11 O -1.060 7.060 12 N -1.096 6.096 13 C 0.198 3.802 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.855 5.855 17 C -0.105 4.105 18 C -0.122 4.122 19 C -0.131 4.131 20 C -0.129 4.129 21 C -0.127 4.127 22 C -0.127 4.127 23 H 0.295 0.705 24 H 0.412 0.588 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.344 0.656 28 H 0.354 0.646 29 H 0.123 0.877 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.294 -9.480 8.282 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.164 1.164 7 C -1.164 5.164 8 H 0.143 0.857 9 S 2.819 3.181 10 O -1.024 7.024 11 O -1.051 7.051 12 N -0.853 5.853 13 C 0.090 3.910 14 H 0.096 0.904 15 C -0.057 4.057 16 N -0.387 5.387 17 C -0.108 4.108 18 C -0.141 4.141 19 C -0.149 4.149 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.146 4.146 23 H 0.105 0.895 24 H 0.246 0.754 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.157 0.843 28 H 0.169 0.831 29 H 0.141 0.859 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.550 -9.628 7.786 15.048 hybrid contribution 1.121 1.099 0.244 1.589 sum 9.671 -8.529 8.030 15.190 Atomic orbital electron populations 1.70051 1.08854 1.31944 1.41782 1.26026 0.95278 1.05357 0.87773 0.85149 0.79372 0.74936 0.79802 1.18416 1.19193 1.16415 1.30899 1.07363 1.12131 1.66014 0.85652 0.99909 0.72791 0.74180 0.71203 1.93321 1.66117 1.88108 1.54845 1.93300 1.82072 1.88017 1.41663 1.55160 1.61218 1.44986 1.23934 1.19636 0.91810 0.97869 0.81715 0.90435 1.21901 0.91178 0.97777 0.94876 1.58454 1.26726 1.06354 1.47137 1.20413 0.99758 0.95869 0.94736 1.21144 0.98508 0.94227 1.00181 1.21449 0.99093 1.00309 0.94055 1.21482 0.99773 0.97362 0.96060 1.21424 0.97859 0.94625 1.00583 1.21276 0.99999 1.00046 0.93252 0.89470 0.75427 0.92657 0.89642 0.84275 0.83149 0.85892 0.83996 0.83503 0.83848 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.22 12.85 21.45 0.28 -53.94 16 2 C 0.07 3.80 5.46 84.66 0.46 4.26 16 3 Si 0.99 41.23 29.54 68.60 2.03 43.26 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 6 H -0.24 -9.10 7.11 99.48 0.71 -8.39 16 7 C -1.03 -56.40 9.49 67.74 0.64 -55.75 16 8 H 0.13 6.10 7.81 -2.91 -0.02 6.07 16 9 S 2.72 148.81 5.06 -56.49 -0.29 148.52 16 10 O -1.03 -63.22 17.38 -128.00 -2.22 -65.44 16 11 O -1.06 -65.45 18.02 -128.00 -2.31 -67.75 16 12 N -1.10 -43.86 4.51 -172.53 -0.78 -44.64 16 13 C 0.20 6.68 2.65 44.24 0.12 6.80 16 14 H 0.08 2.85 7.64 -2.39 -0.02 2.84 16 15 C 0.08 1.85 6.36 86.30 0.55 2.40 16 16 N -0.85 -20.88 9.34 -186.72 -1.74 -22.63 16 17 C -0.11 -3.47 4.96 -19.87 -0.10 -3.57 16 18 C -0.12 -3.75 9.33 22.27 0.21 -3.55 16 19 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 20 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 21 C -0.13 -3.33 10.05 22.27 0.22 -3.10 16 22 C -0.13 -3.91 9.67 22.27 0.22 -3.69 16 23 H 0.30 16.15 8.31 -92.70 -0.77 15.38 16 24 H 0.41 14.68 8.62 -96.74 -0.83 13.85 16 25 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.34 8.57 9.05 -89.70 -0.81 7.76 16 28 H 0.35 6.46 9.08 -89.69 -0.81 5.64 16 29 H 0.12 3.53 7.54 -2.91 -0.02 3.50 16 30 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 31 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 32 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.13 3.57 8.04 -2.91 -0.02 3.55 16 Total: -1.00 -79.48 302.62 -3.58 -83.05 By element: Atomic # 1 Polarization: 43.24 SS G_CDS: -1.31 Total: 41.93 kcal Atomic # 6 Polarization: -65.13 SS G_CDS: 2.77 Total: -62.36 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -2.25 Total: -121.21 kcal Atomic # 8 Polarization: -128.67 SS G_CDS: -4.53 Total: -133.20 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 148.81 SS G_CDS: -0.29 Total: 148.52 kcal Total: -79.48 -3.58 -83.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238911328.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.865 kcal (2) G-P(sol) polarization free energy of solvation -79.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds