Wall clock time and date at job start Mon Mar 30 2020 00:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99675 * 359.72032 * 7 2 1 9 9 S 1.76198 * 119.99742 * 179.97438 * 7 2 1 10 10 O 1.42099 * 106.40257 * 293.53753 * 9 7 2 11 11 O 1.42096 * 106.40041 * 66.46100 * 9 7 2 12 12 N 1.65602 * 107.21304 * 179.97438 * 9 7 2 13 13 C 1.46933 * 120.63054 * 90.00446 * 12 9 7 14 14 C 1.53186 * 108.77587 * 233.58498 * 13 12 9 15 15 H 1.09004 * 109.50245 * 65.31168 * 14 13 12 16 16 N 1.46893 * 109.49787 * 185.37997 * 14 13 12 17 17 C 1.53046 * 109.31055 * 305.36381 * 14 13 12 18 18 C 1.53037 * 109.54194 * 61.36405 * 17 14 13 19 19 F 1.39900 * 109.49481 * 58.58322 * 18 17 14 20 20 F 1.39895 * 109.49870 * 178.68413 * 18 17 14 21 21 C 1.46926 * 120.63435 * 269.71622 * 12 9 7 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.58275 * 353.36886 * 13 12 9 24 24 H 1.08993 * 109.58873 * 113.79202 * 13 12 9 25 25 H 1.00905 * 111.00227 * 179.97438 * 16 14 13 26 26 H 1.00904 * 111.00192 * 303.94995 * 16 14 13 27 27 H 1.09000 * 109.45885 * 181.38723 * 17 14 13 28 28 H 1.09003 * 109.45649 * 301.35639 * 17 14 13 29 29 H 1.08996 * 109.58922 * 246.21036 * 21 12 9 30 30 H 1.09005 * 109.58136 * 6.63405 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 16 3.7665 -1.1941 -0.0012 10 8 4.1673 -0.6494 -1.2510 11 8 4.1682 -0.6499 1.2485 12 7 4.2567 -2.7759 -0.0011 13 6 4.4778 -3.4912 -1.2653 14 6 3.6566 -4.7843 -1.2504 15 1 2.5942 -4.5405 -1.2380 16 7 3.9644 -5.5745 -2.4498 17 6 4.0094 -5.5935 -0.0002 18 6 3.6580 -4.7837 1.2499 19 9 2.2945 -4.4707 1.2354 20 9 3.9530 -5.5360 2.3918 21 6 4.4847 -3.4889 1.2632 22 1 -0.4850 0.8401 0.0004 23 1 4.1596 -2.8659 -2.0994 24 1 5.5359 -3.7315 -1.3689 25 1 3.4348 -6.4333 -2.4628 26 1 3.8027 -5.0369 -3.2883 27 1 3.4445 -6.5257 0.0003 28 1 5.0766 -5.8156 -0.0007 29 1 5.5433 -3.7290 1.3616 30 1 4.1709 -2.8620 2.0979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238963508.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:34 Heat of formation + Delta-G solvation = -175.633385 kcal Electronic energy + Delta-G solvation = -20382.814206 eV Core-core repulsion = 16782.614254 eV Total energy + Delta-G solvation = -3600.199952 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.064 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.70639 -46.70018 -38.09655 -35.85653 -34.58086 -34.08762 -33.05068 -30.80854 -28.55326 -26.43529 -24.66541 -22.53027 -20.35126 -18.77836 -17.89675 -16.99090 -16.74497 -16.55097 -16.51401 -15.78412 -15.37646 -14.70766 -14.41939 -13.81536 -13.80505 -13.49052 -13.28284 -13.02141 -12.92138 -12.78699 -12.62409 -12.10081 -11.82506 -11.52614 -11.42763 -11.00033 -10.91927 -10.69407 -10.65919 -10.46088 -9.90597 -9.27123 -9.24500 -8.82928 -8.52985 -6.82945 -5.37500 1.79123 3.03585 3.13600 3.22280 3.72279 3.89492 3.92666 4.11538 4.46453 4.49584 4.55874 4.75146 5.03304 5.17547 5.27588 5.37901 5.43627 5.60706 5.69877 5.75001 5.88655 5.95711 6.12896 6.31290 6.92119 7.09842 7.32911 7.45528 8.22659 8.67403 10.29362 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.025225 B = 0.008462 C = 0.008025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.723060 B = 3308.089883 C = 3488.307577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.154 3.846 3 Si 0.799 3.201 4 H -0.246 1.246 5 H -0.254 1.254 6 H -0.220 1.220 7 C -1.013 5.013 8 H 0.125 0.875 9 S 2.672 3.328 10 O -1.002 7.002 11 O -1.001 7.001 12 N -0.995 5.995 13 C 0.127 3.873 14 C 0.074 3.926 15 H 0.060 0.940 16 N -0.842 5.842 17 C -0.146 4.146 18 C 0.274 3.726 19 F -0.185 7.185 20 F -0.201 7.201 21 C 0.093 3.907 22 H 0.281 0.719 23 H 0.099 0.901 24 H 0.077 0.923 25 H 0.343 0.657 26 H 0.349 0.651 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.854 -10.214 -1.589 12.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.066 4.066 3 Si 0.619 3.381 4 H -0.170 1.170 5 H -0.178 1.178 6 H -0.142 1.142 7 C -1.147 5.147 8 H 0.143 0.857 9 S 2.776 3.224 10 O -0.992 6.992 11 O -0.992 6.992 12 N -0.829 5.829 13 C 0.001 3.999 14 C -0.039 4.039 15 H 0.078 0.922 16 N -0.373 5.373 17 C -0.185 4.185 18 C 0.235 3.765 19 F -0.166 7.166 20 F -0.182 7.182 21 C -0.035 4.035 22 H 0.091 0.909 23 H 0.118 0.882 24 H 0.095 0.905 25 H 0.156 0.844 26 H 0.162 0.838 27 H 0.102 0.898 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.010 -9.419 -1.279 12.430 hybrid contribution -1.714 0.378 -0.068 1.756 sum 6.296 -9.041 -1.346 11.099 Atomic orbital electron populations 1.69991 1.06539 1.29020 1.39298 1.24427 0.94786 0.98683 0.88713 0.87909 0.83622 0.84725 0.81859 1.16967 1.17757 1.14250 1.30455 1.15138 1.02417 1.66735 0.85661 1.01642 0.77534 0.69837 0.73406 1.93412 1.85465 1.75142 1.45201 1.93466 1.85471 1.75131 1.45092 1.57790 1.84437 1.31556 1.09098 1.21336 1.00089 0.92361 0.86144 1.21644 0.99367 0.93237 0.89604 0.92210 1.58610 1.65260 1.09221 1.04218 1.22434 1.04845 0.98901 0.92324 1.21567 0.79135 0.91882 0.83871 1.93081 1.33248 1.93645 1.96649 1.92985 1.93289 1.78127 1.53763 1.22219 1.00072 0.92305 0.88901 0.90867 0.88232 0.90492 0.84422 0.83754 0.89765 0.88081 0.88696 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.55 13.96 55.43 0.77 -22.78 16 2 C 0.15 4.38 5.47 -17.82 -0.10 4.28 16 3 Si 0.80 20.32 26.54 -169.99 -4.51 15.81 16 4 H -0.25 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.25 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.22 -5.69 5.61 56.52 0.32 -5.37 16 7 C -1.01 -27.97 10.29 30.60 0.31 -27.66 16 8 H 0.13 3.55 8.06 -52.48 -0.42 3.13 16 9 S 2.67 65.50 4.19 -107.50 -0.45 65.04 16 10 O -1.00 -25.77 15.55 -57.17 -0.89 -26.66 16 11 O -1.00 -26.19 14.72 -57.17 -0.84 -27.03 16 12 N -0.99 -18.80 3.26 -113.27 -0.37 -19.17 16 13 C 0.13 1.99 5.92 -3.71 -0.02 1.97 16 14 C 0.07 1.01 3.28 -67.60 -0.22 0.79 16 15 H 0.06 0.93 7.73 -51.93 -0.40 0.53 16 16 N -0.84 -8.83 9.25 -4.57 -0.04 -8.87 16 17 C -0.15 -1.86 5.00 -26.69 -0.13 -1.99 16 18 C 0.27 4.28 2.15 -26.39 -0.06 4.22 16 19 F -0.19 -3.52 16.46 2.25 0.04 -3.48 16 20 F -0.20 -3.02 17.07 2.25 0.04 -2.98 16 21 C 0.09 1.53 5.90 -3.48 -0.02 1.51 16 22 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.10 1.64 7.13 -51.93 -0.37 1.27 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.34 2.98 9.04 -39.29 -0.36 2.63 16 26 H 0.35 3.34 9.00 -39.29 -0.35 2.99 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.12 2.06 7.12 -51.93 -0.37 1.69 16 LS Contribution 267.77 15.07 4.04 4.04 Total: -1.00 -32.04 267.77 -5.64 -37.68 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -3.18 Total: 5.29 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -0.24 Total: -16.87 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.36 Total: -50.82 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -1.73 Total: -53.69 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.08 Total: -6.46 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.51 Total: 15.81 kcal Atomic # 16 Polarization: 65.50 SS G_CDS: -0.45 Total: 65.04 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.04 -5.64 -37.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238963508.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.958 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds