Wall clock time and date at job start Mon Mar 30 2020 00:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99675 * 359.72032 * 7 2 1 9 9 S 1.76198 * 119.99742 * 179.97438 * 7 2 1 10 10 O 1.42099 * 106.40257 * 293.53753 * 9 7 2 11 11 O 1.42096 * 106.40041 * 66.46100 * 9 7 2 12 12 N 1.65602 * 107.21304 * 179.97438 * 9 7 2 13 13 C 1.46933 * 120.63054 * 90.00446 * 12 9 7 14 14 C 1.53186 * 108.77587 * 233.58498 * 13 12 9 15 15 H 1.09004 * 109.50245 * 65.31168 * 14 13 12 16 16 N 1.46893 * 109.49787 * 185.37997 * 14 13 12 17 17 C 1.53046 * 109.31055 * 305.36381 * 14 13 12 18 18 C 1.53037 * 109.54194 * 61.36405 * 17 14 13 19 19 F 1.39900 * 109.49481 * 58.58322 * 18 17 14 20 20 F 1.39895 * 109.49870 * 178.68413 * 18 17 14 21 21 C 1.46926 * 120.63435 * 269.71622 * 12 9 7 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.58275 * 353.36886 * 13 12 9 24 24 H 1.08993 * 109.58873 * 113.79202 * 13 12 9 25 25 H 1.00905 * 111.00227 * 179.97438 * 16 14 13 26 26 H 1.00904 * 111.00192 * 303.94995 * 16 14 13 27 27 H 1.09000 * 109.45885 * 181.38723 * 17 14 13 28 28 H 1.09003 * 109.45649 * 301.35639 * 17 14 13 29 29 H 1.08996 * 109.58922 * 246.21036 * 21 12 9 30 30 H 1.09005 * 109.58136 * 6.63405 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 16 3.7665 -1.1941 -0.0012 10 8 4.1673 -0.6494 -1.2510 11 8 4.1682 -0.6499 1.2485 12 7 4.2567 -2.7759 -0.0011 13 6 4.4778 -3.4912 -1.2653 14 6 3.6566 -4.7843 -1.2504 15 1 2.5942 -4.5405 -1.2380 16 7 3.9644 -5.5745 -2.4498 17 6 4.0094 -5.5935 -0.0002 18 6 3.6580 -4.7837 1.2499 19 9 2.2945 -4.4707 1.2354 20 9 3.9530 -5.5360 2.3918 21 6 4.4847 -3.4889 1.2632 22 1 -0.4850 0.8401 0.0004 23 1 4.1596 -2.8659 -2.0994 24 1 5.5359 -3.7315 -1.3689 25 1 3.4348 -6.4333 -2.4628 26 1 3.8027 -5.0369 -3.2883 27 1 3.4445 -6.5257 0.0003 28 1 5.0766 -5.8156 -0.0007 29 1 5.5433 -3.7290 1.3616 30 1 4.1709 -2.8620 2.0979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238963508.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:34 Heat of formation + Delta-G solvation = -202.861431 kcal Electronic energy + Delta-G solvation = -20383.994903 eV Core-core repulsion = 16782.614254 eV Total energy + Delta-G solvation = -3601.380649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.064 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.98774 -48.00849 -39.32642 -37.85603 -36.59750 -35.34335 -35.13021 -32.00305 -29.66775 -28.57942 -25.97464 -23.74228 -21.69612 -20.53981 -19.64169 -18.87460 -18.06323 -17.93719 -17.74023 -17.29030 -16.99586 -16.12509 -15.81057 -15.55434 -15.12490 -15.05150 -14.86613 -14.66901 -14.34321 -14.16545 -13.93727 -13.58454 -13.42620 -13.25553 -12.96616 -12.83547 -12.65985 -12.52372 -12.09384 -11.92517 -11.76968 -11.35612 -11.21540 -10.10714 -9.71706 -8.97909 -7.54535 -0.06399 1.02763 1.12037 1.18448 1.86332 2.17748 2.39526 2.65425 2.90444 3.24219 3.30142 3.39694 3.61504 3.94322 3.97882 4.02159 4.11301 4.29463 4.48449 4.51438 4.70130 4.79602 4.94660 5.03972 5.37035 5.53033 6.02501 6.09448 6.51815 6.56179 8.20111 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.025225 B = 0.008462 C = 0.008025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.723060 B = 3308.089883 C = 3488.307577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.108 3.892 3 Si 0.823 3.177 4 H -0.236 1.236 5 H -0.220 1.220 6 H -0.227 1.227 7 C -1.036 5.036 8 H 0.103 0.897 9 S 2.696 3.304 10 O -1.016 7.016 11 O -1.020 7.020 12 N -0.992 5.992 13 C 0.117 3.883 14 C 0.081 3.919 15 H 0.031 0.969 16 N -0.830 5.830 17 C -0.138 4.138 18 C 0.269 3.731 19 F -0.212 7.212 20 F -0.196 7.196 21 C 0.082 3.918 22 H 0.291 0.709 23 H 0.086 0.914 24 H 0.110 0.890 25 H 0.357 0.643 26 H 0.355 0.645 27 H 0.101 0.899 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.626 -11.202 -1.992 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.109 4.109 3 Si 0.640 3.360 4 H -0.159 1.159 5 H -0.142 1.142 6 H -0.150 1.150 7 C -1.169 5.169 8 H 0.121 0.879 9 S 2.798 3.202 10 O -1.006 7.006 11 O -1.010 7.010 12 N -0.829 5.829 13 C -0.008 4.008 14 C -0.033 4.033 15 H 0.049 0.951 16 N -0.363 5.363 17 C -0.176 4.176 18 C 0.230 3.770 19 F -0.193 7.193 20 F -0.177 7.177 21 C -0.045 4.045 22 H 0.101 0.899 23 H 0.105 0.895 24 H 0.128 0.872 25 H 0.171 0.829 26 H 0.169 0.831 27 H 0.120 0.880 28 H 0.147 0.853 29 H 0.157 0.843 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.740 -10.409 -1.689 14.355 hybrid contribution -2.248 0.552 0.060 2.315 sum 7.492 -9.857 -1.629 12.488 Atomic orbital electron populations 1.70027 1.07558 1.30446 1.40324 1.25204 0.95628 1.01465 0.88612 0.87516 0.82914 0.82755 0.82803 1.15871 1.14240 1.14983 1.31019 1.17993 1.01563 1.66287 0.87925 1.00718 0.75709 0.71269 0.72549 1.93383 1.84968 1.76629 1.45592 1.93433 1.85033 1.76766 1.45801 1.57340 1.83808 1.30394 1.11375 1.21662 1.02376 0.92689 0.84060 1.21439 0.97299 0.93005 0.91546 0.95136 1.58580 1.65114 1.09300 1.03262 1.22438 1.06794 0.98589 0.89763 1.21833 0.77597 0.92183 0.85370 1.93037 1.35492 1.93941 1.96838 1.92991 1.93099 1.77814 1.53791 1.22550 1.02810 0.92186 0.86968 0.89859 0.89519 0.87228 0.82920 0.83073 0.88006 0.85304 0.84261 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.94 13.96 21.45 0.30 -49.65 16 2 C 0.11 6.22 5.47 84.66 0.46 6.69 16 3 Si 0.82 40.87 26.54 68.60 1.82 42.69 16 4 H -0.24 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.22 -9.68 7.11 99.48 0.71 -8.97 16 6 H -0.23 -11.52 5.61 99.48 0.56 -10.96 16 7 C -1.04 -58.73 10.29 67.74 0.70 -58.04 16 8 H 0.10 6.11 8.06 -2.91 -0.02 6.08 16 9 S 2.70 131.93 4.19 -56.49 -0.24 131.69 16 10 O -1.02 -51.75 15.55 -128.00 -1.99 -53.74 16 11 O -1.02 -53.18 14.72 -128.00 -1.88 -55.07 16 12 N -0.99 -36.37 3.26 -512.28 -1.67 -38.05 16 13 C 0.12 3.44 5.92 86.36 0.51 3.95 16 14 C 0.08 2.03 3.28 44.99 0.15 2.18 16 15 H 0.03 0.95 7.73 -2.39 -0.02 0.93 16 16 N -0.83 -15.03 9.25 -168.36 -1.56 -16.58 16 17 C -0.14 -3.06 5.00 30.62 0.15 -2.91 16 18 C 0.27 7.95 2.15 30.82 0.07 8.02 16 19 F -0.21 -8.13 16.46 44.97 0.74 -7.39 16 20 F -0.20 -5.50 17.07 44.97 0.77 -4.73 16 21 C 0.08 2.55 5.90 86.51 0.51 3.06 16 22 H 0.29 15.30 8.31 -92.71 -0.77 14.53 16 23 H 0.09 2.78 7.13 -2.38 -0.02 2.76 16 24 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.36 5.11 9.04 -89.69 -0.81 4.30 16 26 H 0.36 5.97 9.00 -89.69 -0.81 5.16 16 27 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.13 2.21 8.14 -2.39 -0.02 2.20 16 29 H 0.14 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.10 3.43 7.12 -2.38 -0.02 3.42 16 Total: -1.00 -69.64 267.77 -1.74 -71.37 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -0.57 Total: 16.49 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 2.55 Total: -37.05 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -2.93 Total: -104.28 kcal Atomic # 8 Polarization: -104.93 SS G_CDS: -3.88 Total: -108.81 kcal Atomic # 9 Polarization: -13.62 SS G_CDS: 1.51 Total: -12.12 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.82 Total: 42.69 kcal Atomic # 16 Polarization: 131.93 SS G_CDS: -0.24 Total: 131.69 kcal Total: -69.64 -1.74 -71.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238963508.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.488 kcal (2) G-P(sol) polarization free energy of solvation -69.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds