Wall clock time and date at job start Mon Mar 30 2020 01:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.32930 * 119.62518 * 118.58598 * 3 2 1 5 5 C 1.31334 * 121.77667 * 179.97438 * 4 3 2 6 6 C 1.39729 * 120.81217 * 0.02562 * 5 4 3 7 7 C 1.48230 * 120.41430 * 179.97438 * 6 5 4 8 8 C 1.40052 * 119.98256 * 179.72115 * 7 6 5 9 9 N 1.32180 * 120.28732 * 179.75410 * 8 7 6 10 10 C 1.31885 * 120.28715 * 0.52847 * 9 8 7 11 11 C 1.40843 * 119.96542 * 359.73282 * 10 9 8 12 12 C 1.41336 * 120.14277 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00067 * 155.21555 * 12 11 10 14 14 C 1.40048 * 120.00127 * 335.21935 * 12 11 10 15 15 N 1.30724 * 119.99967 * 342.16295 * 14 12 11 16 16 Si 1.86798 * 120.00012 * 162.17041 * 14 12 11 17 17 H 1.48501 * 109.47463 * 94.65822 * 16 14 12 18 18 H 1.48506 * 109.46998 * 214.65593 * 16 14 12 19 19 H 1.48501 * 109.47299 * 334.65616 * 16 14 12 20 20 N 1.32544 * 119.98850 * 0.02562 * 7 6 5 21 21 C 1.39735 * 119.16809 * 359.97438 * 6 5 4 22 22 C 1.38562 * 118.37591 * 359.74552 * 21 6 5 23 23 F 1.35103 * 120.43963 * 180.23829 * 22 21 6 24 24 H 1.08002 * 119.59077 * 179.97438 * 5 4 3 25 25 H 1.08003 * 119.85771 * 0.02562 * 8 7 6 26 26 H 1.07996 * 120.01718 * 179.71029 * 10 9 8 27 27 H 0.97005 * 120.00470 * 180.02562 * 15 14 12 28 28 H 1.08000 * 120.81027 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2248 0.5538 -1.0147 5 6 4.5372 0.5784 -1.0577 6 6 5.2978 0.0179 -0.0283 7 6 6.7786 0.0501 -0.0862 8 6 7.5320 -0.5094 0.9535 9 7 8.8528 -0.4883 0.9057 10 6 9.4726 0.0690 -0.1164 11 6 8.7262 0.6398 -1.1655 12 6 9.3865 1.2384 -2.2624 13 1 8.8885 1.3120 -3.2180 14 6 10.6867 1.7361 -2.1103 15 7 11.1609 1.9713 -0.9150 16 14 11.7432 2.0642 -3.6155 17 1 11.6159 3.4906 -4.0085 18 1 13.1626 1.7628 -3.2992 19 1 11.2914 1.1999 -4.7354 20 7 7.3891 0.6136 -1.1189 21 6 4.6449 -0.5735 1.0564 22 6 3.2593 -0.5752 1.0698 23 9 2.5855 -1.1313 2.1003 24 1 5.0347 1.0369 -1.8996 25 1 7.0317 -0.9639 1.7958 26 1 10.5519 0.0879 -0.1487 27 1 12.0613 2.3164 -0.8096 28 1 5.2065 -1.0143 1.8668 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238988337.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:27 Heat of formation + Delta-G solvation = 57.316198 kcal Electronic energy + Delta-G solvation = -18385.252870 eV Core-core repulsion = 15122.772394 eV Total energy + Delta-G solvation = -3262.480476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.061 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.23715 -40.40776 -39.13781 -36.65110 -34.56585 -33.55133 -32.60660 -31.38144 -29.56667 -26.57971 -25.37347 -23.96570 -22.03657 -21.95686 -19.70390 -18.27952 -17.52130 -17.06293 -16.15918 -16.07750 -15.74546 -15.13170 -15.04965 -14.44970 -14.26041 -13.69232 -13.56781 -13.43199 -13.20721 -12.85644 -12.73307 -12.45354 -11.90485 -11.58734 -11.43948 -11.17113 -10.64548 -10.43871 -10.18609 -9.98485 -9.92840 -9.52305 -9.04536 -7.91433 -7.68237 -7.28044 -4.96051 0.14064 0.90121 2.07998 2.38018 2.44017 2.87661 2.90104 2.92813 2.96960 3.25976 3.62235 3.71764 3.80700 4.23838 4.31676 4.55926 4.77836 5.02929 5.26836 5.33256 5.40807 5.64768 5.89208 6.04652 6.21992 6.43076 6.67311 6.68206 6.89279 7.20162 7.29851 7.56347 7.89152 8.17085 8.19833 8.81630 9.27726 9.70395 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.035539 B = 0.004127 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.677845 B = 6782.651143 C = 7487.684496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C 0.273 3.727 3 C 0.140 3.860 4 N -0.424 5.424 5 C 0.129 3.871 6 C 0.003 3.997 7 C 0.115 3.885 8 C -0.075 4.075 9 N -0.443 5.443 10 C 0.031 3.969 11 C 0.225 3.775 12 C -0.415 4.415 13 H 0.096 0.904 14 C 0.074 3.926 15 N -0.778 5.778 16 Si 0.926 3.074 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.255 1.255 20 N -0.515 5.515 21 C -0.106 4.106 22 C 0.103 3.897 23 F -0.121 7.121 24 H 0.190 0.810 25 H 0.134 0.866 26 H 0.163 0.837 27 H 0.292 0.708 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.862 -2.421 1.129 4.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.069 5.069 2 C -0.044 4.044 3 C 0.002 3.998 4 N -0.133 5.133 5 C -0.033 4.033 6 C -0.001 4.001 7 C -0.028 4.028 8 C -0.232 4.232 9 N -0.154 5.154 10 C -0.141 4.141 11 C 0.097 3.903 12 C -0.448 4.448 13 H 0.114 0.886 14 C -0.148 4.148 15 N -0.402 5.402 16 Si 0.749 3.251 17 H -0.190 1.190 18 H -0.196 1.196 19 H -0.179 1.179 20 N -0.233 5.233 21 C -0.132 4.132 22 C 0.078 3.922 23 F -0.099 7.099 24 H 0.207 0.793 25 H 0.151 0.849 26 H 0.180 0.820 27 H 0.104 0.896 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.982 -2.003 0.652 6.342 hybrid contribution 1.380 -0.173 0.423 1.454 sum -4.602 -2.176 1.075 5.202 Atomic orbital electron populations 1.81200 1.11346 1.07479 1.06826 1.24759 0.91466 0.94132 0.94002 1.16388 0.86653 1.03498 0.93283 1.67673 1.10903 1.13079 1.21664 1.23253 0.86579 0.94928 0.98555 1.19863 0.93823 0.93602 0.92848 1.19971 0.90535 0.98181 0.94101 1.22661 0.90913 1.09379 1.00223 1.67971 1.09270 1.13712 1.24435 1.24001 1.01447 0.96897 0.91754 1.19298 0.86990 0.90374 0.93654 1.19421 0.97096 1.31354 0.96968 0.88632 1.26088 0.98015 0.92606 0.98109 1.69692 1.17666 1.28818 1.24059 0.85979 0.78488 0.79885 0.80740 1.19046 1.19554 1.17873 1.68813 1.11008 1.19473 1.24048 1.21707 0.91232 1.00028 1.00271 1.18300 0.90398 0.97668 0.85821 1.91561 1.79959 1.82520 1.55877 0.79303 0.84877 0.81969 0.89617 0.81892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.07 18.54 41.84 0.78 -5.29 15 2 C 0.27 3.94 15.16 -22.47 -0.34 3.60 15 3 C 0.14 1.94 6.59 -84.89 -0.56 1.38 15 4 N -0.42 -6.28 10.26 -10.78 -0.11 -6.39 15 5 C 0.13 1.95 10.74 -17.21 -0.18 1.76 15 6 C 0.00 0.05 5.90 -104.67 -0.62 -0.56 15 7 C 0.11 2.25 6.74 -82.77 -0.56 1.69 15 8 C -0.08 -1.49 10.63 -16.72 -0.18 -1.67 15 9 N -0.44 -9.99 10.47 -12.04 -0.13 -10.11 15 10 C 0.03 0.73 9.88 -16.54 -0.16 0.57 15 11 C 0.23 5.39 6.41 -84.84 -0.54 4.85 15 12 C -0.42 -9.59 9.29 -37.73 -0.35 -9.94 15 13 H 0.10 2.13 7.91 -52.48 -0.42 1.72 15 14 C 0.07 1.59 5.13 -17.34 -0.09 1.50 15 15 N -0.78 -17.25 10.97 55.55 0.61 -16.64 15 16 Si 0.93 15.94 29.59 -169.99 -5.03 10.91 15 17 H -0.27 -4.57 7.11 56.52 0.40 -4.17 15 18 H -0.27 -4.55 7.11 56.52 0.40 -4.15 15 19 H -0.26 -4.39 7.11 56.52 0.40 -3.98 15 20 N -0.51 -11.47 9.57 -7.51 -0.07 -11.54 15 21 C -0.11 -1.36 9.51 -38.90 -0.37 -1.73 15 22 C 0.10 1.31 7.30 -38.88 -0.28 1.03 15 23 F -0.12 -1.50 16.81 2.25 0.04 -1.46 15 24 H 0.19 2.87 7.55 -52.49 -0.40 2.47 15 25 H 0.13 2.14 6.24 -52.48 -0.33 1.82 15 26 H 0.16 3.85 6.17 -52.49 -0.32 3.52 15 27 H 0.29 5.79 8.29 -40.82 -0.34 5.46 15 28 H 0.16 1.77 6.29 -52.49 -0.33 1.44 15 LS Contribution 273.26 15.07 4.12 4.12 Total: -1.00 -24.84 273.26 -4.96 -29.81 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -0.93 Total: 4.13 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -4.24 Total: 2.48 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 1.08 Total: -49.98 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 15.94 SS G_CDS: -5.03 Total: 10.91 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -24.84 -4.96 -29.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238988337.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.123 kcal (2) G-P(sol) polarization free energy of solvation -24.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds