Wall clock time and date at job start Mon Mar 30 2020 01:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.32930 * 119.62518 * 118.58598 * 3 2 1 5 5 C 1.31334 * 121.77667 * 179.97438 * 4 3 2 6 6 C 1.39729 * 120.81217 * 0.02562 * 5 4 3 7 7 C 1.48230 * 120.41430 * 179.97438 * 6 5 4 8 8 C 1.40052 * 119.98256 * 179.72115 * 7 6 5 9 9 N 1.32180 * 120.28732 * 179.75410 * 8 7 6 10 10 C 1.31885 * 120.28715 * 0.52847 * 9 8 7 11 11 C 1.40843 * 119.96542 * 359.73282 * 10 9 8 12 12 C 1.41336 * 120.14277 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00067 * 155.21555 * 12 11 10 14 14 C 1.40048 * 120.00127 * 335.21935 * 12 11 10 15 15 N 1.30724 * 119.99967 * 342.16295 * 14 12 11 16 16 Si 1.86798 * 120.00012 * 162.17041 * 14 12 11 17 17 H 1.48501 * 109.47463 * 94.65822 * 16 14 12 18 18 H 1.48506 * 109.46998 * 214.65593 * 16 14 12 19 19 H 1.48501 * 109.47299 * 334.65616 * 16 14 12 20 20 N 1.32544 * 119.98850 * 0.02562 * 7 6 5 21 21 C 1.39735 * 119.16809 * 359.97438 * 6 5 4 22 22 C 1.38562 * 118.37591 * 359.74552 * 21 6 5 23 23 F 1.35103 * 120.43963 * 180.23829 * 22 21 6 24 24 H 1.08002 * 119.59077 * 179.97438 * 5 4 3 25 25 H 1.08003 * 119.85771 * 0.02562 * 8 7 6 26 26 H 1.07996 * 120.01718 * 179.71029 * 10 9 8 27 27 H 0.97005 * 120.00470 * 180.02562 * 15 14 12 28 28 H 1.08000 * 120.81027 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2248 0.5538 -1.0147 5 6 4.5372 0.5784 -1.0577 6 6 5.2978 0.0179 -0.0283 7 6 6.7786 0.0501 -0.0862 8 6 7.5320 -0.5094 0.9535 9 7 8.8528 -0.4883 0.9057 10 6 9.4726 0.0690 -0.1164 11 6 8.7262 0.6398 -1.1655 12 6 9.3865 1.2384 -2.2624 13 1 8.8885 1.3120 -3.2180 14 6 10.6867 1.7361 -2.1103 15 7 11.1609 1.9713 -0.9150 16 14 11.7432 2.0642 -3.6155 17 1 11.6159 3.4906 -4.0085 18 1 13.1626 1.7628 -3.2992 19 1 11.2914 1.1999 -4.7354 20 7 7.3891 0.6136 -1.1189 21 6 4.6449 -0.5735 1.0564 22 6 3.2593 -0.5752 1.0698 23 9 2.5855 -1.1313 2.1003 24 1 5.0347 1.0369 -1.8996 25 1 7.0317 -0.9639 1.7958 26 1 10.5519 0.0879 -0.1487 27 1 12.0613 2.3164 -0.8096 28 1 5.2065 -1.0143 1.8668 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238988337.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:26 Heat of formation + Delta-G solvation = 42.834807 kcal Electronic energy + Delta-G solvation = -18385.880830 eV Core-core repulsion = 15122.772394 eV Total energy + Delta-G solvation = -3263.108436 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.061 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.27967 -41.69554 -40.66983 -37.86168 -36.15814 -35.03264 -34.06846 -32.64137 -31.06104 -28.20746 -26.69343 -25.28877 -23.60284 -23.41830 -20.86971 -19.77984 -18.80819 -18.35161 -17.61904 -17.22918 -17.20962 -16.67898 -16.41994 -15.75681 -15.44630 -15.10564 -14.84830 -14.66588 -14.56633 -14.05550 -14.01192 -13.67544 -13.43138 -13.12605 -13.00272 -12.73037 -12.02258 -11.93206 -11.88152 -11.42189 -11.16739 -10.89892 -10.37138 -9.49426 -9.31913 -8.88458 -6.67577 -1.08261 -0.20741 0.56335 0.84435 1.20875 1.45008 1.51762 1.61409 1.66166 2.08822 2.19016 2.48273 2.65521 2.68075 3.05302 3.40779 3.62547 3.65002 3.77542 4.00555 4.05348 4.25195 4.45108 4.68723 4.85703 5.04829 5.07607 5.21201 5.29238 5.65194 6.03407 6.15336 6.38710 6.50428 6.52528 7.13844 7.60117 8.13011 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.035539 B = 0.004127 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.677845 B = 6782.651143 C = 7487.684496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.284 3.716 3 C 0.148 3.852 4 N -0.434 5.434 5 C 0.135 3.865 6 C -0.014 4.014 7 C 0.122 3.878 8 C -0.081 4.081 9 N -0.453 5.453 10 C -0.004 4.004 11 C 0.201 3.799 12 C -0.444 4.444 13 H 0.093 0.907 14 C 0.042 3.958 15 N -0.805 5.805 16 Si 0.997 3.003 17 H -0.262 1.262 18 H -0.261 1.261 19 H -0.255 1.255 20 N -0.529 5.529 21 C -0.078 4.078 22 C 0.116 3.884 23 F -0.112 7.112 24 H 0.183 0.817 25 H 0.175 0.825 26 H 0.151 0.849 27 H 0.301 0.699 28 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.727 -2.826 1.606 5.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.033 4.033 3 C 0.010 3.990 4 N -0.143 5.143 5 C -0.027 4.027 6 C -0.019 4.019 7 C -0.022 4.022 8 C -0.239 4.239 9 N -0.165 5.165 10 C -0.174 4.174 11 C 0.074 3.926 12 C -0.477 4.477 13 H 0.111 0.889 14 C -0.178 4.178 15 N -0.430 5.430 16 Si 0.816 3.184 17 H -0.186 1.186 18 H -0.185 1.185 19 H -0.179 1.179 20 N -0.249 5.249 21 C -0.104 4.104 22 C 0.092 3.908 23 F -0.091 7.091 24 H 0.200 0.800 25 H 0.192 0.808 26 H 0.168 0.832 27 H 0.113 0.887 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.821 -2.401 1.127 7.318 hybrid contribution 1.391 -0.090 0.386 1.446 sum -5.430 -2.491 1.513 6.163 Atomic orbital electron populations 1.81222 1.11891 1.07969 1.07368 1.24761 0.91426 0.93630 0.93474 1.16451 0.86373 1.02869 0.93325 1.67675 1.10616 1.13738 1.22238 1.23108 0.86649 0.94623 0.98334 1.19619 0.91636 0.96072 0.94540 1.20450 0.92457 0.96313 0.93010 1.23321 0.90144 1.09004 1.01416 1.67926 1.10814 1.13556 1.24159 1.23755 1.01086 0.99520 0.92993 1.19559 0.87824 0.91006 0.94261 1.19663 0.98520 1.32638 0.96866 0.88928 1.26907 0.98389 0.91694 1.00836 1.69723 1.18421 1.29007 1.25887 0.84946 0.76899 0.79626 0.76901 1.18618 1.18544 1.17866 1.68836 1.10542 1.20151 1.25327 1.21857 0.91187 0.97849 0.99521 1.18093 0.90147 0.97099 0.85484 1.91597 1.79783 1.82265 1.55433 0.79976 0.80763 0.83180 0.88719 0.79136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -11.85 18.54 19.00 0.35 -11.50 15 2 C 0.28 7.55 15.16 88.33 1.34 8.89 15 3 C 0.15 3.73 6.59 40.60 0.27 3.99 15 4 N -0.43 -12.03 10.26 -188.02 -1.93 -13.96 15 5 C 0.13 3.89 10.74 85.13 0.91 4.80 15 6 C -0.01 -0.41 5.90 -19.90 -0.12 -0.53 15 7 C 0.12 4.66 6.74 42.14 0.28 4.94 15 8 C -0.08 -3.10 10.63 85.08 0.90 -2.19 15 9 N -0.45 -20.46 10.47 -192.02 -2.01 -22.47 15 10 C 0.00 -0.19 9.88 85.32 0.84 0.65 15 11 C 0.20 9.92 6.41 40.24 0.26 10.18 15 12 C -0.44 -21.20 9.29 23.47 0.22 -20.98 15 13 H 0.09 4.29 7.91 -2.91 -0.02 4.27 15 14 C 0.04 1.81 5.13 85.30 0.44 2.25 15 15 N -0.81 -36.61 10.97 21.84 0.24 -36.37 15 16 Si 1.00 32.69 29.59 68.60 2.03 34.72 15 17 H -0.26 -8.36 7.11 99.48 0.71 -7.65 15 18 H -0.26 -8.09 7.11 99.48 0.71 -7.38 15 19 H -0.26 -8.27 7.11 99.48 0.71 -7.57 15 20 N -0.53 -23.92 9.57 -177.68 -1.70 -25.62 15 21 C -0.08 -1.71 9.51 22.71 0.22 -1.50 15 22 C 0.12 2.56 7.30 22.72 0.17 2.73 15 23 F -0.11 -2.36 16.81 44.97 0.76 -1.60 15 24 H 0.18 5.51 7.55 -2.91 -0.02 5.49 15 25 H 0.18 4.96 6.24 -2.91 -0.02 4.95 15 26 H 0.15 7.49 6.17 -2.91 -0.02 7.47 15 27 H 0.30 12.13 8.29 -92.70 -0.77 11.36 15 28 H 0.19 3.16 6.29 -2.91 -0.02 3.15 15 Total: -1.00 -54.22 273.26 4.72 -49.50 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.25 Total: 14.08 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 5.73 Total: 13.22 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -5.05 Total: -109.92 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.76 Total: -1.60 kcal Atomic # 14 Polarization: 32.69 SS G_CDS: 2.03 Total: 34.72 kcal Total: -54.22 4.72 -49.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238988337.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.331 kcal (2) G-P(sol) polarization free energy of solvation -54.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds