Wall clock time and date at job start Mon Mar 30 2020 01:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 N 1.32992 * 119.59867 * 117.64147 * 3 2 1 5 5 C 1.31269 * 121.79274 * 180.02562 * 4 3 2 6 6 C 1.40029 * 120.76849 * 359.97438 * 5 4 3 7 7 C 1.47802 * 120.43417 * 179.97438 * 6 5 4 8 8 C 1.40505 * 120.79417 * 359.97438 * 7 6 5 9 9 N 1.31570 * 119.08376 * 180.02562 * 8 7 6 10 10 C 1.33661 * 120.83673 * 0.02562 * 9 8 7 11 11 C 1.41063 * 119.12634 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99871 * 6.48679 * 11 10 9 13 13 C 1.40173 * 120.00110 * 186.48277 * 11 10 9 14 14 N 1.30642 * 120.00120 * 176.14534 * 13 11 10 15 15 Si 1.86805 * 120.00029 * 355.87784 * 13 11 10 16 16 H 1.48496 * 109.46923 * 180.27243 * 15 13 11 17 17 H 1.48493 * 109.46751 * 300.27203 * 15 13 11 18 18 H 1.48503 * 109.47053 * 60.27313 * 15 13 11 19 19 N 1.33663 * 121.74686 * 0.26777 * 10 9 8 20 20 C 1.31562 * 120.83560 * 359.43855 * 19 10 9 21 21 C 1.40004 * 119.13137 * 0.25218 * 6 5 4 22 22 C 1.38421 * 118.35705 * 359.50463 * 21 6 5 23 23 F 1.35100 * 120.42626 * 180.23474 * 22 21 6 24 24 H 1.07996 * 119.61192 * 179.97438 * 5 4 3 25 25 H 1.07994 * 120.45696 * 0.02562 * 8 7 6 26 26 H 0.96996 * 119.99553 * 354.87125 * 14 13 11 27 27 H 1.08003 * 120.45751 * 180.27017 * 20 19 10 28 28 H 1.08002 * 120.82246 * 179.72037 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2247 0.5374 -1.0244 5 6 4.5364 0.5609 -1.0691 6 6 5.2985 0.0161 -0.0284 7 6 6.7751 0.0460 -0.0866 8 6 7.4402 0.6190 -1.1837 9 7 8.7558 0.6270 -1.2010 10 6 9.4574 0.0990 -0.1933 11 6 10.8667 0.1266 -0.2495 12 1 11.3651 0.6612 -1.0446 13 6 11.6202 -0.5397 0.7268 14 7 12.9227 -0.5779 0.6334 15 14 10.7624 -1.3666 2.1656 16 1 11.7758 -1.9907 3.0537 17 1 9.9906 -0.3542 2.9299 18 1 9.8390 -2.4124 1.6566 19 7 8.8592 -0.4595 0.8634 20 6 7.5473 -0.4989 0.9529 21 6 4.6435 -0.5625 1.0654 22 6 3.2594 -0.5629 1.0778 23 9 2.5846 -1.1058 2.1148 24 1 5.0335 1.0055 -1.9186 25 1 6.8793 1.0470 -2.0013 26 1 13.3638 -0.2105 -0.1485 27 1 7.0703 -0.9479 1.8116 28 1 5.2044 -0.9946 1.8810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238993370.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:29 Heat of formation + Delta-G solvation = 47.471525 kcal Electronic energy + Delta-G solvation = -18457.039952 eV Core-core repulsion = 15194.132579 eV Total energy + Delta-G solvation = -3262.907373 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.18343 -40.38983 -39.41158 -36.56918 -34.71500 -33.46999 -32.87198 -31.63934 -30.11477 -27.04955 -24.78445 -24.02622 -22.67506 -21.66889 -19.65213 -19.14659 -17.67521 -17.41378 -16.44089 -16.07953 -15.97041 -15.09713 -14.67508 -14.22694 -14.17299 -13.89036 -13.61409 -13.56590 -13.18454 -12.86512 -12.81280 -12.69899 -12.40145 -12.20452 -11.30976 -11.22807 -10.41294 -10.21673 -10.12362 -9.85763 -9.52151 -9.38538 -9.33079 -8.16653 -8.02933 -7.79961 -5.45750 0.24521 0.98620 1.87471 2.18688 2.48127 2.86873 3.29533 3.32471 3.40838 3.68329 3.77847 3.92654 4.02754 4.19000 4.54779 4.59770 4.75267 5.06029 5.08843 5.13842 5.18498 5.44179 5.52098 5.64458 5.89692 6.21609 6.40723 6.56367 6.75433 6.83843 7.31313 7.46865 7.56317 7.64367 7.76589 8.16787 9.22659 9.37070 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.039145 B = 0.004388 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.120622 B = 6379.649088 C = 7082.640811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.278 3.722 3 C 0.094 3.906 4 N -0.409 5.409 5 C 0.070 3.930 6 C 0.057 3.943 7 C -0.344 4.344 8 C 0.217 3.783 9 N -0.573 5.573 10 C 0.362 3.638 11 C -0.380 4.380 12 H 0.100 0.900 13 C 0.032 3.968 14 N -0.756 5.756 15 Si 1.162 2.838 16 H -0.325 1.325 17 H -0.284 1.284 18 H -0.286 1.286 19 N -0.593 5.593 20 C 0.227 3.773 21 C -0.156 4.156 22 C 0.126 3.874 23 F -0.124 7.124 24 H 0.172 0.828 25 H 0.147 0.853 26 H 0.294 0.706 27 H 0.145 0.855 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 -0.340 0.901 8.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.038 4.038 3 C -0.043 4.043 4 N -0.117 5.117 5 C -0.095 4.095 6 C 0.051 3.949 7 C -0.355 4.355 8 C 0.038 3.962 9 N -0.290 5.290 10 C 0.136 3.864 11 C -0.412 4.412 12 H 0.118 0.882 13 C -0.194 4.194 14 N -0.374 5.374 15 Si 0.995 3.005 16 H -0.258 1.258 17 H -0.212 1.212 18 H -0.214 1.214 19 N -0.314 5.314 20 C 0.051 3.949 21 C -0.182 4.182 22 C 0.102 3.898 23 F -0.103 7.103 24 H 0.189 0.811 25 H 0.164 0.836 26 H 0.106 0.894 27 H 0.162 0.838 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.627 -0.735 1.499 8.787 hybrid contribution -0.319 0.507 -0.743 0.954 sum -8.946 -0.228 0.756 8.981 Atomic orbital electron populations 1.81189 1.11493 1.08455 1.07208 1.24814 0.91529 0.93715 0.93759 1.16106 0.86347 1.07818 0.94020 1.67395 1.10767 1.11742 1.21787 1.22852 0.87370 1.00150 0.99122 1.19673 0.93775 0.89903 0.91510 1.19285 0.90585 1.22112 1.03519 1.22912 0.90830 0.88740 0.93767 1.68749 1.06957 1.24439 1.28808 1.19886 0.94646 0.87769 0.84131 1.21010 0.89165 1.21972 1.09019 0.88216 1.28262 0.94407 0.93551 1.03196 1.70608 1.09825 1.28678 1.28294 0.81673 0.70719 0.76481 0.71653 1.25776 1.21205 1.21370 1.67020 1.10764 1.26621 1.27032 1.22702 0.89316 0.88256 0.94587 1.21511 0.91130 1.04196 1.01334 1.18346 0.90466 0.96053 0.84952 1.91544 1.80137 1.82965 1.55629 0.81090 0.83625 0.89429 0.83771 0.82811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.37 18.54 41.84 0.78 -5.60 15 2 C 0.28 4.03 15.16 -22.47 -0.34 3.69 15 3 C 0.09 1.27 6.60 -84.81 -0.56 0.71 15 4 N -0.41 -5.52 10.26 -10.68 -0.11 -5.63 15 5 C 0.07 0.85 10.62 -17.12 -0.18 0.67 15 6 C 0.06 0.75 5.90 -104.65 -0.62 0.13 15 7 C -0.34 -5.47 5.94 -104.28 -0.62 -6.09 15 8 C 0.22 3.68 10.71 -16.81 -0.18 3.50 15 9 N -0.57 -12.18 10.34 -12.39 -0.13 -12.31 15 10 C 0.36 8.29 7.24 -158.15 -1.14 7.15 15 11 C -0.38 -9.03 9.79 -37.79 -0.37 -9.40 15 12 H 0.10 2.39 8.06 -52.49 -0.42 1.97 15 13 C 0.03 0.75 5.52 -17.33 -0.10 0.66 15 14 N -0.76 -17.56 13.64 55.56 0.76 -16.80 15 15 Si 1.16 24.32 25.43 -169.99 -4.32 19.99 15 16 H -0.32 -6.78 7.11 56.52 0.40 -6.38 15 17 H -0.28 -5.90 6.96 56.52 0.39 -5.51 15 18 H -0.29 -5.95 6.90 56.52 0.39 -5.56 15 19 N -0.59 -12.71 4.45 -12.40 -0.06 -12.77 15 20 C 0.23 3.98 10.71 -16.82 -0.18 3.80 15 21 C -0.16 -1.88 9.54 -38.85 -0.37 -2.25 15 22 C 0.13 1.59 7.29 -38.89 -0.28 1.30 15 23 F -0.12 -1.57 16.81 2.25 0.04 -1.54 15 24 H 0.17 1.69 6.29 -52.49 -0.33 1.36 15 25 H 0.15 1.87 6.35 -52.49 -0.33 1.54 15 26 H 0.29 6.44 8.72 -40.82 -0.36 6.09 15 27 H 0.15 2.00 6.39 -52.48 -0.34 1.67 15 28 H 0.15 1.58 6.39 -52.49 -0.34 1.24 15 LS Contribution 267.65 15.07 4.03 4.03 Total: -1.00 -25.44 267.65 -4.88 -30.32 By element: Atomic # 1 Polarization: -2.65 SS G_CDS: -0.93 Total: -3.58 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -4.94 Total: 3.87 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 1.24 Total: -53.10 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -4.32 Total: 19.99 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -25.44 -4.88 -30.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238993370.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.795 kcal (2) G-P(sol) polarization free energy of solvation -25.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds