Wall clock time and date at job start Mon Mar 30 2020 01:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 N 1.32992 * 119.59867 * 117.64147 * 3 2 1 5 5 C 1.31269 * 121.79274 * 180.02562 * 4 3 2 6 6 C 1.40029 * 120.76849 * 359.97438 * 5 4 3 7 7 C 1.47802 * 120.43417 * 179.97438 * 6 5 4 8 8 C 1.40505 * 120.79417 * 359.97438 * 7 6 5 9 9 N 1.31570 * 119.08376 * 180.02562 * 8 7 6 10 10 C 1.33661 * 120.83673 * 0.02562 * 9 8 7 11 11 C 1.41063 * 119.12634 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99871 * 6.48679 * 11 10 9 13 13 C 1.40173 * 120.00110 * 186.48277 * 11 10 9 14 14 N 1.30642 * 120.00120 * 176.14534 * 13 11 10 15 15 Si 1.86805 * 120.00029 * 355.87784 * 13 11 10 16 16 H 1.48496 * 109.46923 * 180.27243 * 15 13 11 17 17 H 1.48493 * 109.46751 * 300.27203 * 15 13 11 18 18 H 1.48503 * 109.47053 * 60.27313 * 15 13 11 19 19 N 1.33663 * 121.74686 * 0.26777 * 10 9 8 20 20 C 1.31562 * 120.83560 * 359.43855 * 19 10 9 21 21 C 1.40004 * 119.13137 * 0.25218 * 6 5 4 22 22 C 1.38421 * 118.35705 * 359.50463 * 21 6 5 23 23 F 1.35100 * 120.42626 * 180.23474 * 22 21 6 24 24 H 1.07996 * 119.61192 * 179.97438 * 5 4 3 25 25 H 1.07994 * 120.45696 * 0.02562 * 8 7 6 26 26 H 0.96996 * 119.99553 * 354.87125 * 14 13 11 27 27 H 1.08003 * 120.45751 * 180.27017 * 20 19 10 28 28 H 1.08002 * 120.82246 * 179.72037 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2247 0.5374 -1.0244 5 6 4.5364 0.5609 -1.0691 6 6 5.2985 0.0161 -0.0284 7 6 6.7751 0.0460 -0.0866 8 6 7.4402 0.6190 -1.1837 9 7 8.7558 0.6270 -1.2010 10 6 9.4574 0.0990 -0.1933 11 6 10.8667 0.1266 -0.2495 12 1 11.3651 0.6612 -1.0446 13 6 11.6202 -0.5397 0.7268 14 7 12.9227 -0.5779 0.6334 15 14 10.7624 -1.3666 2.1656 16 1 11.7758 -1.9907 3.0537 17 1 9.9906 -0.3542 2.9299 18 1 9.8390 -2.4124 1.6566 19 7 8.8592 -0.4595 0.8634 20 6 7.5473 -0.4989 0.9529 21 6 4.6435 -0.5625 1.0654 22 6 3.2594 -0.5629 1.0778 23 9 2.5846 -1.1058 2.1148 24 1 5.0335 1.0055 -1.9186 25 1 6.8793 1.0470 -2.0013 26 1 13.3638 -0.2105 -0.1485 27 1 7.0703 -0.9479 1.8116 28 1 5.2044 -0.9946 1.8810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238993370.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:28 Heat of formation + Delta-G solvation = 32.928010 kcal Electronic energy + Delta-G solvation = -18457.670606 eV Core-core repulsion = 15194.132579 eV Total energy + Delta-G solvation = -3263.538027 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.20550 -41.66396 -40.75896 -37.77740 -36.23407 -34.79133 -34.37109 -32.78199 -31.46426 -28.46990 -26.03418 -25.35255 -23.90627 -23.11035 -20.86240 -20.63830 -18.85107 -18.60267 -17.78102 -17.35918 -17.12281 -16.29492 -16.05243 -15.57826 -15.48156 -15.23153 -14.93077 -14.70587 -14.58177 -14.16318 -14.05435 -13.99118 -13.75302 -13.37644 -12.87484 -12.70111 -11.89658 -11.81061 -11.50922 -11.07823 -11.03575 -10.81769 -10.47256 -9.70391 -9.46662 -9.35273 -7.09480 -0.91635 -0.04675 0.48121 0.74072 1.32350 1.58878 1.63583 1.81682 2.07245 2.28195 2.40870 2.49678 2.75631 2.84792 3.40866 3.50071 3.54132 3.64859 3.80805 3.86917 3.99002 4.00305 4.39686 4.49297 4.84412 4.89904 5.16108 5.22076 5.29560 5.42805 5.81058 6.00755 6.15629 6.19959 6.56374 6.70907 7.68143 7.75711 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.039145 B = 0.004388 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.120622 B = 6379.649088 C = 7082.640811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.287 3.713 3 C 0.105 3.895 4 N -0.423 5.423 5 C 0.090 3.910 6 C 0.045 3.955 7 C -0.312 4.312 8 C 0.210 3.790 9 N -0.607 5.607 10 C 0.372 3.628 11 C -0.441 4.441 12 H 0.074 0.926 13 C 0.015 3.985 14 N -0.791 5.791 15 Si 1.194 2.806 16 H -0.330 1.330 17 H -0.282 1.282 18 H -0.283 1.283 19 N -0.618 5.618 20 C 0.209 3.791 21 C -0.131 4.131 22 C 0.127 3.873 23 F -0.122 7.122 24 H 0.199 0.801 25 H 0.190 0.810 26 H 0.289 0.711 27 H 0.184 0.816 28 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.689 -0.533 1.305 11.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.029 4.029 3 C -0.032 4.032 4 N -0.132 5.132 5 C -0.073 4.073 6 C 0.040 3.960 7 C -0.322 4.322 8 C 0.035 3.965 9 N -0.325 5.325 10 C 0.141 3.859 11 C -0.475 4.475 12 H 0.093 0.907 13 C -0.207 4.207 14 N -0.412 5.412 15 Si 1.026 2.974 16 H -0.263 1.263 17 H -0.210 1.210 18 H -0.211 1.211 19 N -0.341 5.341 20 C 0.038 3.962 21 C -0.156 4.156 22 C 0.102 3.898 23 F -0.101 7.101 24 H 0.215 0.785 25 H 0.206 0.794 26 H 0.101 0.899 27 H 0.201 0.799 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -12.376 -0.919 1.891 12.553 hybrid contribution 0.097 0.618 -0.940 1.129 sum -12.279 -0.301 0.951 12.319 Atomic orbital electron populations 1.81213 1.12283 1.09027 1.07898 1.24976 0.91726 0.93134 0.93110 1.16234 0.85917 1.06830 0.94187 1.67497 1.11212 1.12532 1.21920 1.23267 0.86862 0.98054 0.99146 1.19518 0.92116 0.91652 0.92719 1.19492 0.91901 1.18735 1.02024 1.23679 0.89785 0.87877 0.95200 1.68778 1.08999 1.25763 1.28936 1.19929 0.94606 0.86845 0.84559 1.20765 0.90149 1.26157 1.10458 0.90749 1.28874 0.94538 0.93260 1.04005 1.70623 1.10192 1.31479 1.28901 0.81243 0.70021 0.75907 0.70247 1.26307 1.20951 1.21144 1.66977 1.12667 1.27636 1.26818 1.23449 0.88379 0.88086 0.96273 1.21768 0.90932 1.01843 1.01101 1.18264 0.90539 0.96208 0.84789 1.91565 1.80128 1.82904 1.55484 0.78466 0.79373 0.89933 0.79890 0.80420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -12.29 18.54 19.00 0.35 -11.94 15 2 C 0.29 7.36 15.16 88.33 1.34 8.70 15 3 C 0.11 2.38 6.60 40.62 0.27 2.65 15 4 N -0.42 -9.41 10.26 -187.69 -1.92 -11.34 15 5 C 0.09 1.72 10.62 85.21 0.91 2.62 15 6 C 0.04 0.93 5.90 -19.88 -0.12 0.82 15 7 C -0.31 -8.57 5.94 -19.64 -0.12 -8.68 15 8 C 0.21 6.41 10.71 85.28 0.91 7.32 15 9 N -0.61 -25.36 10.34 -193.12 -2.00 -27.36 15 10 C 0.37 17.20 7.24 134.89 0.98 18.18 15 11 C -0.44 -22.24 9.79 23.43 0.23 -22.01 15 12 H 0.07 3.92 8.06 -2.91 -0.02 3.90 15 13 C 0.01 0.72 5.52 85.34 0.47 1.19 15 14 N -0.79 -39.25 13.64 21.86 0.30 -38.95 15 15 Si 1.19 50.12 25.43 68.60 1.74 51.86 15 16 H -0.33 -13.77 7.11 99.48 0.71 -13.07 15 17 H -0.28 -11.46 6.96 99.48 0.69 -10.77 15 18 H -0.28 -11.53 6.90 99.48 0.69 -10.85 15 19 N -0.62 -25.71 4.45 -193.13 -0.86 -26.57 15 20 C 0.21 6.60 10.71 85.28 0.91 7.52 15 21 C -0.13 -2.42 9.54 22.74 0.22 -2.20 15 22 C 0.13 2.56 7.29 22.72 0.17 2.73 15 23 F -0.12 -2.57 16.81 44.97 0.76 -1.81 15 24 H 0.20 2.68 6.29 -2.91 -0.02 2.66 15 25 H 0.19 3.92 6.35 -2.91 -0.02 3.90 15 26 H 0.29 13.85 8.72 -92.71 -0.81 13.04 15 27 H 0.18 4.14 6.39 -2.91 -0.02 4.12 15 28 H 0.18 2.49 6.39 -2.91 -0.02 2.48 15 Total: -1.00 -57.57 267.65 5.71 -51.86 By element: Atomic # 1 Polarization: -5.77 SS G_CDS: 1.18 Total: -4.59 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 6.16 Total: 18.83 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -4.13 Total: -116.15 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.76 Total: -1.81 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 1.74 Total: 51.86 kcal Total: -57.57 5.71 -51.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238993370.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.784 kcal (2) G-P(sol) polarization free energy of solvation -57.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds