Wall clock time and date at job start Mon Mar 30 2020 01:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86797 * 119.99999 * 2 1 4 4 H 1.48504 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46821 * 299.99824 * 3 2 1 6 6 H 1.48505 * 109.47412 * 59.99647 * 3 2 1 7 7 C 1.40047 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99527 * 186.33509 * 7 2 1 9 9 C 1.41308 * 120.00222 * 6.33666 * 7 2 1 10 10 C 1.40854 * 120.14912 * 173.78291 * 9 7 2 11 11 N 1.31867 * 119.97679 * 179.97438 * 10 9 7 12 12 C 1.32189 * 120.28613 * 0.02562 * 11 10 9 13 13 C 1.40046 * 120.29962 * 0.02562 * 12 11 10 14 14 C 1.48213 * 119.99074 * 179.97438 * 13 12 11 15 15 C 1.39458 * 120.05992 * 179.97438 * 14 13 12 16 16 C 1.37918 * 120.01757 * 179.74167 * 15 14 13 17 17 C 1.38739 * 120.19316 * 0.02562 * 16 15 14 18 18 C 1.39441 * 120.03191 * 359.97438 * 17 16 15 19 19 C 1.38274 * 119.95400 * 0.02562 * 18 17 16 20 20 O 1.36524 * 108.61903 * 179.97438 * 18 17 16 21 21 C 1.43979 * 105.46866 * 342.68823 * 20 18 17 22 22 O 1.36472 * 131.37466 * 179.97438 * 17 16 15 23 23 N 1.32577 * 120.01920 * 0.24584 * 13 12 11 24 24 H 0.96996 * 119.99952 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00841 * 359.97438 * 10 9 7 26 26 H 1.08005 * 119.84708 * 180.02562 * 12 11 10 27 27 H 1.08004 * 119.99181 * 359.73060 * 15 14 13 28 28 H 1.07999 * 119.90254 * 179.97438 * 16 15 14 29 29 H 1.07998 * 120.03401 * 180.02562 * 19 18 17 30 30 H 1.08995 * 110.57143 * 268.61321 * 21 20 18 31 31 H 1.09003 * 110.56606 * 145.74896 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3963 -1.2126 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2129 0.0005 8 1 3.0826 -1.2156 0.1038 9 6 1.3075 -2.4329 -0.1340 10 6 2.0151 -3.6438 -0.2653 11 7 1.3583 -4.7804 -0.3901 12 6 0.0365 -4.7898 -0.3932 13 6 -0.6788 -3.5927 -0.2644 14 6 -2.1609 -3.6111 -0.2693 15 6 -2.8746 -2.4199 -0.1406 16 6 -4.2537 -2.4374 -0.1506 17 6 -4.9353 -3.6380 -0.2879 18 6 -4.2266 -4.8320 -0.4169 19 6 -2.8440 -4.8188 -0.4074 20 8 -5.1194 -5.8581 -0.5353 21 6 -6.3748 -5.3307 -0.0676 22 8 -6.2704 -3.9181 -0.3263 23 7 -0.0308 -2.4425 -0.1436 24 1 -0.4850 0.8400 -0.0004 25 1 3.0950 -3.6412 -0.2638 26 1 -0.4942 -5.7249 -0.4954 27 1 -2.3474 -1.4835 -0.0330 28 1 -4.8046 -1.5139 -0.0504 29 1 -2.2939 -5.7427 -0.5076 30 1 -6.4948 -5.5171 0.9996 31 1 -7.2041 -5.7622 -0.6283 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240897623.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:05 Heat of formation + Delta-G solvation = 6.869378 kcal Electronic energy + Delta-G solvation = -19382.869843 eV Core-core repulsion = 16209.369383 eV Total energy + Delta-G solvation = -3173.500460 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.90381 -39.18556 -37.28795 -36.09403 -34.14806 -32.42431 -31.23636 -30.04804 -28.66388 -26.13393 -25.66445 -23.51450 -22.96165 -21.70325 -21.02165 -17.83600 -17.66718 -17.41964 -17.01430 -16.04250 -15.57840 -15.35545 -14.97251 -14.29029 -14.12672 -13.60276 -13.36802 -13.28639 -13.03009 -12.80432 -12.50784 -12.06027 -11.64024 -11.46292 -11.40773 -10.86651 -10.79198 -10.69889 -10.37859 -9.92840 -9.63233 -9.30448 -8.57246 -8.14830 -7.56499 -7.30332 -6.64135 -4.79051 1.18266 1.60245 2.50516 2.84119 2.98278 3.01475 3.02560 3.10382 3.58832 3.77737 4.05238 4.60290 4.71873 4.75629 4.89361 5.17395 5.38589 5.44079 5.66841 5.68494 5.80797 5.90433 6.18038 6.23659 6.30332 6.42492 6.60753 6.78145 6.86042 6.97334 6.99513 7.16926 7.40874 7.53898 7.94433 8.30121 8.54955 9.12331 9.68179 10.02448 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.005219 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.245931 B = 5364.082075 C = 6439.099316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.068 3.932 3 Si 0.914 3.086 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.411 4.411 8 H 0.093 0.907 9 C 0.208 3.792 10 C -0.058 4.058 11 N -0.429 5.429 12 C -0.106 4.106 13 C 0.137 3.863 14 C -0.007 4.007 15 C -0.067 4.067 16 C -0.108 4.108 17 C 0.020 3.980 18 C 0.018 3.982 19 C -0.088 4.088 20 O -0.313 6.313 21 C 0.214 3.786 22 O -0.314 6.314 23 N -0.441 5.441 24 H 0.277 0.723 25 H 0.135 0.865 26 H 0.129 0.871 27 H 0.166 0.834 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.079 0.921 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.895 -2.262 0.718 9.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.159 4.159 3 Si 0.737 3.263 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.442 4.442 8 H 0.111 0.889 9 C 0.081 3.919 10 C -0.228 4.228 11 N -0.141 5.141 12 C -0.264 4.264 13 C -0.009 4.009 14 C -0.009 4.009 15 C -0.086 4.086 16 C -0.127 4.127 17 C -0.024 4.024 18 C -0.026 4.026 19 C -0.107 4.107 20 O -0.229 6.229 21 C 0.102 3.898 22 O -0.231 6.231 23 N -0.159 5.159 24 H 0.088 0.912 25 H 0.153 0.847 26 H 0.147 0.853 27 H 0.184 0.816 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.096 0.904 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.253 -2.209 0.600 9.532 hybrid contribution 0.058 0.516 0.031 0.521 sum -9.195 -1.693 0.631 9.370 Atomic orbital electron populations 1.70029 1.07470 1.28418 1.27368 1.26118 0.94994 1.01474 0.93304 0.86157 0.80884 0.80473 0.78759 1.18153 1.19615 1.19650 1.19683 0.95118 0.89112 1.40322 0.88938 1.19361 0.88618 0.93497 0.90383 1.23256 0.99400 0.89329 1.10814 1.67685 1.08751 1.30040 1.07580 1.22536 0.90700 0.97037 1.16120 1.20431 0.91838 0.91916 0.96738 1.18368 0.91816 0.91599 0.99072 1.21517 0.91368 1.00275 0.95406 1.20095 0.93718 0.94773 1.04074 1.19914 0.81841 0.95427 1.05192 1.19504 0.91810 0.85370 1.05889 1.20096 0.88745 0.99271 1.02608 1.87324 1.18637 1.34660 1.82297 1.25504 0.87551 0.76588 1.00192 1.87301 1.21700 1.25665 1.88395 1.69500 1.08158 1.22955 1.15249 0.91153 0.84718 0.85336 0.81649 0.85028 0.84504 0.90392 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.03 11.51 55.55 0.64 -16.39 16 2 C 0.07 1.57 5.49 -17.34 -0.10 1.47 16 3 Si 0.91 17.07 29.56 -169.99 -5.03 12.04 16 4 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.41 -10.09 9.15 -37.74 -0.35 -10.44 16 8 H 0.09 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.21 5.39 6.54 -84.84 -0.56 4.83 16 10 C -0.06 -1.41 10.98 -16.55 -0.18 -1.59 16 11 N -0.43 -10.45 10.47 -12.04 -0.13 -10.58 16 12 C -0.11 -2.43 10.62 -16.72 -0.18 -2.61 16 13 C 0.14 3.24 6.73 -82.77 -0.56 2.68 16 14 C -0.01 -0.14 5.88 -104.90 -0.62 -0.75 16 15 C -0.07 -1.28 9.57 -39.24 -0.38 -1.65 16 16 C -0.11 -1.79 10.04 -39.51 -0.40 -2.19 16 17 C 0.02 0.34 7.15 -38.95 -0.28 0.06 16 18 C 0.02 0.31 7.14 -39.12 -0.28 0.03 16 19 C -0.09 -1.57 9.44 -39.12 -0.37 -1.94 16 20 O -0.31 -4.75 11.40 -45.77 -0.52 -5.28 16 21 C 0.21 2.47 8.89 101.05 0.90 3.37 16 22 O -0.31 -4.67 11.40 -45.60 -0.52 -5.19 16 23 N -0.44 -11.36 7.16 -7.51 -0.05 -11.41 16 24 H 0.28 5.94 8.29 -40.82 -0.34 5.60 16 25 H 0.14 2.95 8.06 -52.49 -0.42 2.53 16 26 H 0.13 2.58 6.18 -52.48 -0.32 2.26 16 27 H 0.17 3.43 7.54 -52.48 -0.40 3.03 16 28 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 29 H 0.14 2.27 6.18 -52.49 -0.32 1.94 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 278.89 15.07 4.20 4.20 Total: -1.00 -28.57 278.89 -7.02 -35.59 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -2.28 Total: 5.75 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -3.33 Total: -8.74 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.46 Total: -38.38 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -1.04 Total: -10.46 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.57 -7.02 -35.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240897623.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.461 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds