Wall clock time and date at job start Mon Mar 30 2020 01:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86797 * 119.99999 * 2 1 4 4 H 1.48504 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46821 * 299.99824 * 3 2 1 6 6 H 1.48505 * 109.47412 * 59.99647 * 3 2 1 7 7 C 1.40047 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99527 * 186.33509 * 7 2 1 9 9 C 1.41308 * 120.00222 * 6.33666 * 7 2 1 10 10 C 1.40854 * 120.14912 * 173.78291 * 9 7 2 11 11 N 1.31867 * 119.97679 * 179.97438 * 10 9 7 12 12 C 1.32189 * 120.28613 * 0.02562 * 11 10 9 13 13 C 1.40046 * 120.29962 * 0.02562 * 12 11 10 14 14 C 1.48213 * 119.99074 * 179.97438 * 13 12 11 15 15 C 1.39458 * 120.05992 * 179.97438 * 14 13 12 16 16 C 1.37918 * 120.01757 * 179.74167 * 15 14 13 17 17 C 1.38739 * 120.19316 * 0.02562 * 16 15 14 18 18 C 1.39441 * 120.03191 * 359.97438 * 17 16 15 19 19 C 1.38274 * 119.95400 * 0.02562 * 18 17 16 20 20 O 1.36524 * 108.61903 * 179.97438 * 18 17 16 21 21 C 1.43979 * 105.46866 * 342.68823 * 20 18 17 22 22 O 1.36472 * 131.37466 * 179.97438 * 17 16 15 23 23 N 1.32577 * 120.01920 * 0.24584 * 13 12 11 24 24 H 0.96996 * 119.99952 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00841 * 359.97438 * 10 9 7 26 26 H 1.08005 * 119.84708 * 180.02562 * 12 11 10 27 27 H 1.08004 * 119.99181 * 359.73060 * 15 14 13 28 28 H 1.07999 * 119.90254 * 179.97438 * 16 15 14 29 29 H 1.07998 * 120.03401 * 180.02562 * 19 18 17 30 30 H 1.08995 * 110.57143 * 268.61321 * 21 20 18 31 31 H 1.09003 * 110.56606 * 145.74896 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3963 -1.2126 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2129 0.0005 8 1 3.0826 -1.2156 0.1038 9 6 1.3075 -2.4329 -0.1340 10 6 2.0151 -3.6438 -0.2653 11 7 1.3583 -4.7804 -0.3901 12 6 0.0365 -4.7898 -0.3932 13 6 -0.6788 -3.5927 -0.2644 14 6 -2.1609 -3.6111 -0.2693 15 6 -2.8746 -2.4199 -0.1406 16 6 -4.2537 -2.4374 -0.1506 17 6 -4.9353 -3.6380 -0.2879 18 6 -4.2266 -4.8320 -0.4169 19 6 -2.8440 -4.8188 -0.4074 20 8 -5.1194 -5.8581 -0.5353 21 6 -6.3748 -5.3307 -0.0676 22 8 -6.2704 -3.9181 -0.3263 23 7 -0.0308 -2.4425 -0.1436 24 1 -0.4850 0.8400 -0.0004 25 1 3.0950 -3.6412 -0.2638 26 1 -0.4942 -5.7249 -0.4954 27 1 -2.3474 -1.4835 -0.0330 28 1 -4.8046 -1.5139 -0.0504 29 1 -2.2939 -5.7427 -0.5076 30 1 -6.4948 -5.5171 0.9996 31 1 -7.2041 -5.7622 -0.6283 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240897623.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:05 Heat of formation + Delta-G solvation = -10.652049 kcal Electronic energy + Delta-G solvation = -19383.629629 eV Core-core repulsion = 16209.369383 eV Total energy + Delta-G solvation = -3174.260246 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.10685 -40.94663 -38.72087 -37.27486 -35.93749 -34.16298 -32.90937 -31.47059 -30.17430 -27.90742 -26.75164 -25.10431 -24.50905 -23.27617 -22.58085 -19.54403 -18.97522 -18.79725 -18.25758 -17.36680 -17.23902 -17.00464 -16.62136 -15.72666 -15.41643 -15.07443 -14.94012 -14.79061 -14.50148 -13.97958 -13.77103 -13.60385 -13.35666 -13.10212 -12.98847 -12.52227 -12.13481 -12.09185 -11.94233 -11.66660 -11.49061 -10.95732 -10.12693 -9.66537 -9.38457 -8.80564 -8.40138 -6.65349 -0.32471 0.23102 0.81982 1.14010 1.44789 1.54497 1.60126 1.77584 2.21081 2.50553 2.55305 2.87686 3.43422 3.56967 3.82647 3.84796 4.00458 4.06909 4.12920 4.24171 4.33775 4.43395 4.54649 4.64936 4.85750 5.01626 5.04899 5.12147 5.17516 5.29929 5.49320 5.62413 5.74937 6.11482 6.13926 6.47867 6.71433 7.27568 7.84498 8.31261 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.005219 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.245931 B = 5364.082075 C = 6439.099316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.025 3.975 3 Si 0.993 3.007 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.434 4.434 8 H 0.103 0.897 9 C 0.177 3.823 10 C -0.080 4.080 11 N -0.439 5.439 12 C -0.118 4.118 13 C 0.131 3.869 14 C -0.033 4.033 15 C -0.074 4.074 16 C -0.103 4.103 17 C 0.030 3.970 18 C 0.019 3.981 19 C -0.085 4.085 20 O -0.320 6.320 21 C 0.203 3.797 22 O -0.318 6.318 23 N -0.466 5.466 24 H 0.287 0.713 25 H 0.151 0.849 26 H 0.156 0.844 27 H 0.145 0.855 28 H 0.157 0.843 29 H 0.147 0.853 30 H 0.104 0.896 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 -2.040 0.792 10.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.199 4.199 3 Si 0.812 3.188 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.465 4.465 8 H 0.121 0.879 9 C 0.051 3.949 10 C -0.249 4.249 11 N -0.150 5.150 12 C -0.277 4.277 13 C -0.016 4.016 14 C -0.035 4.035 15 C -0.093 4.093 16 C -0.121 4.121 17 C -0.015 4.015 18 C -0.026 4.026 19 C -0.105 4.105 20 O -0.237 6.237 21 C 0.093 3.907 22 O -0.235 6.235 23 N -0.184 5.184 24 H 0.098 0.902 25 H 0.168 0.832 26 H 0.173 0.827 27 H 0.162 0.838 28 H 0.175 0.825 29 H 0.165 0.835 30 H 0.122 0.878 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.888 -2.016 0.678 11.094 hybrid contribution 0.333 0.353 0.017 0.486 sum -10.555 -1.663 0.695 10.708 Atomic orbital electron populations 1.70102 1.08962 1.29965 1.26962 1.27034 0.95818 1.04619 0.92431 0.84984 0.79527 0.75444 0.78800 1.17503 1.19251 1.18985 1.20100 0.95900 0.89727 1.40745 0.87855 1.19817 0.89262 0.94600 0.91230 1.23470 1.00220 0.89216 1.12017 1.67694 1.09475 1.30054 1.07777 1.22973 0.90546 0.98138 1.15996 1.20936 0.93628 0.91566 0.95452 1.18292 0.90304 0.93066 1.01845 1.21333 0.92497 0.99114 0.96363 1.20182 0.92691 0.96099 1.03137 1.20002 0.82821 0.95133 1.03576 1.19513 0.91706 0.86234 1.05110 1.20056 0.89481 0.98713 1.02246 1.87321 1.19513 1.34447 1.82435 1.26177 0.87048 0.74802 1.02677 1.87303 1.20270 1.27715 1.88187 1.69506 1.08315 1.24165 1.16456 0.90243 0.83173 0.82726 0.83755 0.82515 0.83521 0.87810 0.81625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.04 11.51 21.84 0.25 -35.79 16 2 C 0.03 1.17 5.49 85.29 0.47 1.63 16 3 Si 0.99 34.73 29.56 68.60 2.03 36.76 16 4 H -0.25 -8.47 7.11 99.48 0.71 -7.77 16 5 H -0.27 -9.15 7.11 99.48 0.71 -8.45 16 6 H -0.27 -8.95 7.11 99.48 0.71 -8.24 16 7 C -0.43 -21.78 9.15 23.46 0.21 -21.57 16 8 H 0.10 4.75 7.85 -2.91 -0.02 4.72 16 9 C 0.18 9.49 6.54 40.23 0.26 9.76 16 10 C -0.08 -4.03 10.98 85.33 0.94 -3.09 16 11 N -0.44 -21.81 10.47 -192.02 -2.01 -23.82 16 12 C -0.12 -5.54 10.62 85.08 0.90 -4.64 16 13 C 0.13 6.36 6.73 42.12 0.28 6.64 16 14 C -0.03 -1.37 5.88 -20.04 -0.12 -1.49 16 15 C -0.07 -2.87 9.57 22.49 0.22 -2.65 16 16 C -0.10 -3.28 10.04 22.31 0.22 -3.06 16 17 C 0.03 0.92 7.15 22.68 0.16 1.08 16 18 C 0.02 0.60 7.14 22.57 0.16 0.76 16 19 C -0.09 -3.01 9.44 22.57 0.21 -2.80 16 20 O -0.32 -8.80 11.40 -76.33 -0.87 -9.67 16 21 C 0.20 3.88 8.89 113.37 1.01 4.89 16 22 O -0.32 -8.40 11.40 -75.73 -0.86 -9.26 16 23 N -0.47 -24.93 7.16 -177.68 -1.27 -26.20 16 24 H 0.29 12.41 8.29 -92.71 -0.77 11.64 16 25 H 0.15 6.78 8.06 -2.91 -0.02 6.75 16 26 H 0.16 6.20 6.18 -2.91 -0.02 6.18 16 27 H 0.14 6.23 7.54 -2.91 -0.02 6.20 16 28 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 29 H 0.15 4.74 6.18 -2.91 -0.02 4.72 16 30 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.17 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -62.76 278.89 3.38 -59.38 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 1.19 Total: 23.13 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 4.93 Total: -14.53 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -3.03 Total: -85.80 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -1.73 Total: -18.93 kcal Atomic # 14 Polarization: 34.73 SS G_CDS: 2.03 Total: 36.76 kcal Total: -62.76 3.38 -59.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240897623.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.725 kcal (2) G-P(sol) polarization free energy of solvation -62.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds