Wall clock time and date at job start Mon Mar 30 2020 01:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86805 * 120.00217 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72653 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72562 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.72487 * 3 2 1 7 7 C 1.40115 * 119.99883 * 179.72675 * 2 1 3 8 8 H 1.08000 * 119.99546 * 179.97438 * 7 2 1 9 9 C 1.40979 * 120.00007 * 0.02562 * 7 2 1 10 10 N 1.33687 * 119.12495 * 359.72339 * 9 7 2 11 11 C 1.31552 * 120.83159 * 179.75391 * 10 9 7 12 12 C 1.40515 * 119.08920 * 0.51532 * 11 10 9 13 13 C 1.47798 * 120.79785 * 179.76061 * 12 11 10 14 14 C 1.39786 * 120.08165 * 179.70191 * 13 12 11 15 15 C 1.37786 * 119.99970 * 179.70736 * 14 13 12 16 16 C 1.38884 * 120.20983 * 0.58376 * 15 14 13 17 17 C 1.39619 * 120.05981 * 359.69956 * 16 15 14 18 18 C 1.38129 * 119.98166 * 0.02562 * 17 16 15 19 19 O 1.36524 * 108.58021 * 180.02562 * 17 16 15 20 20 C 1.43981 * 105.47104 * 342.68788 * 19 17 16 21 21 O 1.36424 * 131.36658 * 179.72843 * 16 15 14 22 22 C 1.40508 * 118.40728 * 359.74521 * 12 11 10 23 23 N 1.31553 * 119.08851 * 359.97438 * 22 12 11 24 24 H 0.97000 * 119.99610 * 0.27113 * 1 2 3 25 25 H 1.08003 * 120.45758 * 180.23629 * 11 10 9 26 26 H 1.08007 * 119.99783 * 0.02562 * 14 13 12 27 27 H 1.08001 * 119.89613 * 180.27860 * 15 14 13 28 28 H 1.07999 * 120.04755 * 179.97438 * 18 17 16 29 29 H 1.08992 * 110.55863 * 268.63916 * 20 19 17 30 30 H 1.08995 * 110.55811 * 145.78898 * 20 19 17 31 31 H 1.08005 * 120.45911 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4941 2.0430 -1.4001 5 1 1.4354 2.6543 0.6942 6 1 3.5354 1.4418 0.7058 7 6 2.0073 -1.2134 0.0058 8 1 3.0873 -1.2134 0.0054 9 6 1.3024 -2.4343 0.0111 10 7 -0.0343 -2.4139 0.0161 11 6 -0.7257 -3.5330 0.0162 12 6 -0.0402 -4.7596 0.0221 13 6 -0.7792 -6.0395 0.0278 14 6 -0.0820 -7.2511 0.0272 15 6 -0.7726 -8.4433 0.0386 16 6 -2.1614 -8.4465 0.0385 17 6 -2.8635 -7.2397 0.0330 18 6 -2.1764 -6.0414 0.0273 19 8 -4.2008 -7.5144 0.0346 20 6 -4.3106 -8.8912 -0.3719 21 8 -3.0607 -9.4723 0.0434 22 6 1.3648 -4.7401 0.0220 23 7 1.9883 -3.5817 0.0161 24 1 -0.4849 0.8401 -0.0040 25 1 -1.8055 -3.5094 0.0165 26 1 0.9981 -7.2526 0.0231 27 1 -0.2322 -9.3784 0.0428 28 1 -2.7184 -5.1073 0.0227 29 1 -4.4252 -8.9630 -1.4534 30 1 -5.1452 -9.3748 0.1356 31 1 1.9251 -5.6634 0.0260 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240900172.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:07 Heat of formation + Delta-G solvation = 9.386037 kcal Electronic energy + Delta-G solvation = -19035.692996 eV Core-core repulsion = 15862.301667 eV Total energy + Delta-G solvation = -3173.391329 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.83974 -39.18374 -37.31387 -36.05020 -34.07036 -32.13715 -31.60074 -30.13924 -28.77909 -26.42470 -25.28892 -23.57906 -22.91988 -21.72695 -21.05232 -18.25477 -17.60546 -17.37908 -17.11789 -16.13435 -15.91335 -15.21241 -14.69568 -14.25237 -13.96459 -13.61438 -13.30220 -13.25280 -12.85391 -12.75610 -12.55665 -12.41732 -12.05122 -11.47387 -11.44029 -10.95686 -10.84287 -10.67877 -10.44458 -9.68886 -9.34164 -9.33338 -8.83370 -8.25915 -7.49972 -7.26071 -6.77271 -4.90163 1.25853 1.58646 2.52587 2.86101 2.93400 2.94604 2.98583 3.07174 3.64017 3.70778 4.04950 4.52008 4.74398 4.80367 4.93123 5.33301 5.40301 5.48605 5.56335 5.68143 5.73549 5.75274 5.89341 6.14538 6.31242 6.43944 6.53970 6.63886 6.74037 6.76749 6.93764 7.28730 7.40793 7.49349 7.92464 8.25221 8.33312 8.90638 9.86648 10.06034 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046699 B = 0.003873 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.444256 B = 7227.179008 C = 7804.712147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.058 3.942 3 Si 0.924 3.076 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.369 4.369 8 H 0.098 0.902 9 C 0.377 3.623 10 N -0.508 5.508 11 C 0.185 3.815 12 C -0.333 4.333 13 C 0.055 3.945 14 C -0.142 4.142 15 C -0.081 4.081 16 C -0.021 4.021 17 C 0.045 3.955 18 C -0.129 4.129 19 O -0.314 6.314 20 C 0.215 3.785 21 O -0.316 6.316 22 C 0.193 3.807 23 N -0.592 5.592 24 H 0.281 0.719 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 -9.388 -1.003 10.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.171 4.171 3 Si 0.747 3.253 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.401 4.401 8 H 0.116 0.884 9 C 0.145 3.855 10 N -0.223 5.223 11 C 0.007 3.993 12 C -0.343 4.343 13 C 0.053 3.947 14 C -0.161 4.161 15 C -0.100 4.100 16 C -0.065 4.065 17 C 0.001 3.999 18 C -0.148 4.148 19 O -0.231 6.231 20 C 0.102 3.898 21 O -0.233 6.233 22 C 0.017 3.983 23 N -0.310 5.310 24 H 0.092 0.908 25 H 0.150 0.850 26 H 0.152 0.848 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.094 0.906 30 H 0.141 0.859 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.493 -8.244 -0.889 9.431 hybrid contribution -0.590 -0.420 -0.080 0.729 sum -5.083 -8.664 -0.969 10.092 Atomic orbital electron populations 1.70125 1.07528 1.28930 1.24561 1.26265 0.95171 1.01907 0.93759 0.86040 0.80394 0.79242 0.79664 1.18948 1.19707 1.18028 1.19556 0.95258 0.87879 1.37422 0.88360 1.19961 0.86010 0.90903 0.88600 1.69365 1.08042 1.26748 1.18192 1.23098 0.99138 0.87884 0.89158 1.19604 0.95203 0.92642 1.26892 1.18393 0.90590 0.92782 0.92924 1.20908 0.99943 0.90378 1.04871 1.19856 0.88718 0.99018 1.02395 1.19722 0.91950 0.84862 1.09932 1.19646 0.81755 0.94953 1.03529 1.20044 0.93044 0.94816 1.06907 1.87328 1.21652 1.28920 1.85172 1.25453 0.87801 0.76950 0.99570 1.87248 1.18693 1.31939 1.85404 1.22704 0.90321 0.95922 0.89336 1.68666 1.40687 0.98439 1.23206 0.90771 0.85015 0.84812 0.85531 0.85042 0.90590 0.85897 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.13 11.40 55.55 0.63 -16.50 16 2 C 0.06 1.38 5.50 -17.34 -0.10 1.28 16 3 Si 0.92 17.25 29.56 -169.99 -5.02 12.23 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 6 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 7 C -0.37 -9.52 9.35 -37.84 -0.35 -9.87 16 8 H 0.10 2.41 7.85 -52.49 -0.41 2.00 16 9 C 0.38 10.14 7.35 -158.14 -1.16 8.98 16 10 N -0.51 -13.43 7.82 -12.40 -0.10 -13.52 16 11 C 0.19 4.26 10.70 -16.81 -0.18 4.08 16 12 C -0.33 -7.05 5.94 -104.28 -0.62 -7.67 16 13 C 0.06 1.01 5.88 -104.85 -0.62 0.39 16 14 C -0.14 -2.24 9.44 -39.17 -0.37 -2.61 16 15 C -0.08 -1.20 10.04 -39.51 -0.40 -1.60 16 16 C -0.02 -0.34 7.16 -38.83 -0.28 -0.62 16 17 C 0.05 0.76 7.14 -39.11 -0.28 0.48 16 18 C -0.13 -2.26 9.46 -39.07 -0.37 -2.63 16 19 O -0.31 -4.84 11.40 -45.77 -0.52 -5.36 16 20 C 0.21 2.49 8.88 101.05 0.90 3.39 16 21 O -0.32 -4.63 11.40 -45.44 -0.52 -5.15 16 22 C 0.19 4.19 10.70 -16.82 -0.18 4.01 16 23 N -0.59 -14.93 10.34 -12.41 -0.13 -15.06 16 24 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 25 H 0.13 2.68 6.33 -52.48 -0.33 2.34 16 26 H 0.13 1.84 6.28 -52.48 -0.33 1.52 16 27 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.13 2.21 6.28 -52.49 -0.33 1.88 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.13 2.39 6.33 -52.48 -0.33 2.05 16 LS Contribution 276.47 15.07 4.17 4.17 Total: -1.00 -29.65 276.47 -7.63 -37.28 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -2.14 Total: 4.30 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -4.00 Total: -2.39 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.41 Total: -45.08 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.04 Total: -10.51 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.02 Total: 12.23 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.65 -7.63 -37.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240900172.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.671 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds