Wall clock time and date at job start Mon Mar 30 2020 01:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86805 * 120.00217 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72653 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72562 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.72487 * 3 2 1 7 7 C 1.40115 * 119.99883 * 179.72675 * 2 1 3 8 8 H 1.08000 * 119.99546 * 179.97438 * 7 2 1 9 9 C 1.40979 * 120.00007 * 0.02562 * 7 2 1 10 10 N 1.33687 * 119.12495 * 359.72339 * 9 7 2 11 11 C 1.31552 * 120.83159 * 179.75391 * 10 9 7 12 12 C 1.40515 * 119.08920 * 0.51532 * 11 10 9 13 13 C 1.47798 * 120.79785 * 179.76061 * 12 11 10 14 14 C 1.39786 * 120.08165 * 179.70191 * 13 12 11 15 15 C 1.37786 * 119.99970 * 179.70736 * 14 13 12 16 16 C 1.38884 * 120.20983 * 0.58376 * 15 14 13 17 17 C 1.39619 * 120.05981 * 359.69956 * 16 15 14 18 18 C 1.38129 * 119.98166 * 0.02562 * 17 16 15 19 19 O 1.36524 * 108.58021 * 180.02562 * 17 16 15 20 20 C 1.43981 * 105.47104 * 342.68788 * 19 17 16 21 21 O 1.36424 * 131.36658 * 179.72843 * 16 15 14 22 22 C 1.40508 * 118.40728 * 359.74521 * 12 11 10 23 23 N 1.31553 * 119.08851 * 359.97438 * 22 12 11 24 24 H 0.97000 * 119.99610 * 0.27113 * 1 2 3 25 25 H 1.08003 * 120.45758 * 180.23629 * 11 10 9 26 26 H 1.08007 * 119.99783 * 0.02562 * 14 13 12 27 27 H 1.08001 * 119.89613 * 180.27860 * 15 14 13 28 28 H 1.07999 * 120.04755 * 179.97438 * 18 17 16 29 29 H 1.08992 * 110.55863 * 268.63916 * 20 19 17 30 30 H 1.08995 * 110.55811 * 145.78898 * 20 19 17 31 31 H 1.08005 * 120.45911 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4941 2.0430 -1.4001 5 1 1.4354 2.6543 0.6942 6 1 3.5354 1.4418 0.7058 7 6 2.0073 -1.2134 0.0058 8 1 3.0873 -1.2134 0.0054 9 6 1.3024 -2.4343 0.0111 10 7 -0.0343 -2.4139 0.0161 11 6 -0.7257 -3.5330 0.0162 12 6 -0.0402 -4.7596 0.0221 13 6 -0.7792 -6.0395 0.0278 14 6 -0.0820 -7.2511 0.0272 15 6 -0.7726 -8.4433 0.0386 16 6 -2.1614 -8.4465 0.0385 17 6 -2.8635 -7.2397 0.0330 18 6 -2.1764 -6.0414 0.0273 19 8 -4.2008 -7.5144 0.0346 20 6 -4.3106 -8.8912 -0.3719 21 8 -3.0607 -9.4723 0.0434 22 6 1.3648 -4.7401 0.0220 23 7 1.9883 -3.5817 0.0161 24 1 -0.4849 0.8401 -0.0040 25 1 -1.8055 -3.5094 0.0165 26 1 0.9981 -7.2526 0.0231 27 1 -0.2322 -9.3784 0.0428 28 1 -2.7184 -5.1073 0.0227 29 1 -4.4252 -8.9630 -1.4534 30 1 -5.1452 -9.3748 0.1356 31 1 1.9251 -5.6634 0.0260 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240900172.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:07 Heat of formation + Delta-G solvation = -8.884740 kcal Electronic energy + Delta-G solvation = -19036.485277 eV Core-core repulsion = 15862.301667 eV Total energy + Delta-G solvation = -3174.183610 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.00520 -40.92797 -38.68060 -37.20940 -35.80031 -33.92041 -33.20304 -31.44383 -30.32672 -27.93168 -26.48310 -25.16467 -24.46050 -23.17080 -22.57463 -19.95059 -18.85140 -18.69442 -18.38952 -17.56154 -17.39962 -16.74493 -16.24194 -15.55140 -15.30474 -15.04318 -14.89156 -14.62923 -14.41908 -14.00469 -13.91932 -13.75639 -13.48515 -13.07756 -12.94922 -12.73355 -12.06568 -12.01207 -11.95446 -11.33257 -11.17168 -11.09960 -10.29925 -9.62739 -9.32330 -8.71885 -8.51793 -6.74477 -0.17859 0.31199 0.93227 1.07620 1.40353 1.52047 1.57227 1.87914 2.17250 2.57668 2.60331 2.89552 3.55131 3.85919 3.89577 3.89949 3.96312 4.02890 4.15695 4.21663 4.27792 4.37048 4.39523 4.62070 4.89195 5.02491 5.12368 5.16708 5.24600 5.33191 5.47851 5.75418 5.76603 6.07165 6.22182 6.44011 6.51905 7.11344 8.13470 8.26978 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046699 B = 0.003873 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.444256 B = 7227.179008 C = 7804.712147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.020 3.980 3 Si 1.003 2.997 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.254 1.254 7 C -0.412 4.412 8 H 0.097 0.903 9 C 0.350 3.650 10 N -0.541 5.541 11 C 0.163 3.837 12 C -0.315 4.315 13 C 0.028 3.972 14 C -0.127 4.127 15 C -0.079 4.079 16 C -0.012 4.012 17 C 0.030 3.970 18 C -0.134 4.134 19 O -0.329 6.329 20 C 0.205 3.795 21 O -0.322 6.322 22 C 0.181 3.819 23 N -0.617 5.617 24 H 0.289 0.711 25 H 0.149 0.851 26 H 0.157 0.843 27 H 0.161 0.839 28 H 0.128 0.872 29 H 0.100 0.900 30 H 0.162 0.838 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.998 -11.506 -1.122 12.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.205 4.205 3 Si 0.821 3.179 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.177 1.177 7 C -0.446 4.446 8 H 0.115 0.885 9 C 0.117 3.883 10 N -0.258 5.258 11 C -0.012 4.012 12 C -0.325 4.325 13 C 0.026 3.974 14 C -0.145 4.145 15 C -0.097 4.097 16 C -0.056 4.056 17 C -0.014 4.014 18 C -0.153 4.153 19 O -0.246 6.246 20 C 0.094 3.906 21 O -0.239 6.239 22 C 0.008 3.992 23 N -0.336 5.336 24 H 0.100 0.900 25 H 0.166 0.834 26 H 0.174 0.826 27 H 0.179 0.821 28 H 0.145 0.855 29 H 0.117 0.883 30 H 0.179 0.821 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.816 -10.444 -1.012 11.546 hybrid contribution -0.740 -0.194 -0.056 0.767 sum -5.556 -10.638 -1.068 12.049 Atomic orbital electron populations 1.70187 1.09134 1.30302 1.25773 1.27192 0.95930 1.04949 0.92468 0.84895 0.78838 0.74261 0.79876 1.18249 1.18603 1.17720 1.19844 0.95439 0.88982 1.40289 0.88529 1.20364 0.86579 0.91963 0.89394 1.69327 1.08246 1.28370 1.19809 1.23507 1.00060 0.88288 0.89370 1.19829 0.95314 0.93387 1.23972 1.18288 0.90854 0.92344 0.95939 1.21169 1.01085 0.89636 1.02660 1.20200 0.88434 0.99987 1.01128 1.20046 0.92708 0.84926 1.07963 1.19710 0.82692 0.95018 1.04017 1.20062 0.93113 0.95353 1.06783 1.87311 1.20856 1.31032 1.85420 1.26059 0.87618 0.75262 1.01656 1.87245 1.19426 1.31781 1.85400 1.23361 0.91009 0.96373 0.88494 1.68689 1.41243 0.99111 1.24510 0.90027 0.83435 0.82574 0.82105 0.85457 0.88251 0.82126 0.80816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.77 11.40 21.85 0.25 -37.53 16 2 C 0.02 0.96 5.50 85.32 0.47 1.43 16 3 Si 1.00 36.07 29.56 68.60 2.03 38.10 16 4 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 5 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 6 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 7 C -0.41 -22.29 9.35 23.40 0.22 -22.07 16 8 H 0.10 4.99 7.85 -2.91 -0.02 4.96 16 9 C 0.35 19.69 7.35 134.86 0.99 20.68 16 10 N -0.54 -29.89 7.82 -193.16 -1.51 -31.40 16 11 C 0.16 7.75 10.70 85.29 0.91 8.66 16 12 C -0.32 -13.35 5.94 -19.64 -0.12 -13.47 16 13 C 0.03 0.97 5.88 -20.01 -0.12 0.85 16 14 C -0.13 -3.61 9.44 22.54 0.21 -3.39 16 15 C -0.08 -2.03 10.04 22.32 0.22 -1.81 16 16 C -0.01 -0.36 7.16 22.76 0.16 -0.19 16 17 C 0.03 0.95 7.14 22.58 0.16 1.11 16 18 C -0.13 -4.59 9.46 22.60 0.21 -4.38 16 19 O -0.33 -9.43 11.40 -76.34 -0.87 -10.30 16 20 C 0.20 4.04 8.88 113.37 1.01 5.05 16 21 O -0.32 -8.25 11.40 -75.16 -0.86 -9.11 16 22 C 0.18 7.82 10.70 85.29 0.91 8.73 16 23 N -0.62 -31.88 10.34 -193.16 -2.00 -33.87 16 24 H 0.29 13.17 8.29 -92.71 -0.77 12.40 16 25 H 0.15 6.24 6.33 -2.91 -0.02 6.22 16 26 H 0.16 3.67 6.28 -2.91 -0.02 3.65 16 27 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.13 4.33 6.28 -2.91 -0.02 4.32 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.16 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.18 5.81 6.33 -2.91 -0.02 5.79 16 Total: -1.00 -67.11 276.47 3.49 -63.62 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 1.19 Total: 19.28 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.25 Total: 1.20 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -3.26 Total: -102.79 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -1.73 Total: -19.41 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Total: -67.11 3.49 -63.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240900172.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.736 kcal (2) G-P(sol) polarization free energy of solvation -67.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds