Wall clock time and date at job start Mon Mar 30 2020 01:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86803 * 119.99525 * 2 1 4 4 H 1.48497 * 109.46961 * 269.99680 * 3 2 1 5 5 H 1.48497 * 109.47233 * 29.99957 * 3 2 1 6 6 H 1.48504 * 109.47022 * 149.99985 * 3 2 1 7 7 C 1.40171 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00394 * 180.02562 * 7 2 1 9 9 C 1.40801 * 119.99698 * 0.02562 * 7 2 1 10 10 N 1.33971 * 120.28708 * 10.24392 * 9 7 2 11 11 C 1.31611 * 119.89903 * 180.02562 * 10 9 7 12 12 C 1.39196 * 120.50265 * 359.97438 * 11 10 9 13 13 N 1.32009 * 120.58541 * 0.03120 * 12 11 10 14 14 C 1.32852 * 120.08244 * 359.96752 * 13 12 11 15 15 C 1.47812 * 120.25166 * 179.97438 * 14 13 12 16 16 C 1.39813 * 120.07970 * 43.84957 * 15 14 13 17 17 C 1.38018 * 120.14827 * 179.74106 * 16 15 14 18 18 C 1.38134 * 120.31222 * 0.51553 * 17 16 15 19 19 C 1.39736 * 120.15820 * 359.76864 * 18 17 16 20 20 C 1.47750 * 120.07502 * 179.97438 * 19 18 17 21 21 O 1.21467 * 120.00174 * 179.97438 * 20 19 18 22 22 O 1.34710 * 119.99786 * 359.97438 * 20 19 18 23 23 C 1.39349 * 119.85033 * 359.97144 * 19 18 17 24 24 H 0.97000 * 120.00235 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.74976 * 180.27871 * 11 10 9 26 26 H 1.07995 * 119.71160 * 180.02562 * 12 11 10 27 27 H 1.07998 * 119.92659 * 359.97438 * 16 15 14 28 28 H 1.07996 * 119.84599 * 180.26610 * 17 16 15 29 29 H 1.08007 * 119.91881 * 179.73968 * 18 17 16 30 30 H 0.96704 * 116.99622 * 180.02562 * 22 20 19 31 31 H 1.08008 * 120.15463 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5383 1.4404 0.7001 7 6 2.0078 -1.2139 0.0005 8 1 3.0878 -1.2138 0.0010 9 6 1.3038 -2.4333 0.0005 10 7 -0.0198 -2.4493 -0.2057 11 6 -0.6703 -3.5934 -0.2036 12 6 0.0066 -4.7906 0.0111 13 7 1.3106 -4.7974 0.2164 14 6 1.9903 -3.6560 0.2191 15 6 3.4504 -3.6592 0.4492 16 6 4.2583 -4.6051 -0.1891 17 6 5.6225 -4.6061 0.0205 18 6 6.1980 -3.6808 0.8696 19 6 5.4021 -2.7334 1.5189 20 6 6.0195 -1.7450 2.4270 21 8 5.3265 -0.9218 2.9904 22 8 7.3512 -1.7569 2.6303 23 6 4.0247 -2.7230 1.3078 24 1 -0.4850 0.8400 -0.0004 25 1 -1.7366 -3.6039 -0.3746 26 1 -0.5398 -5.7221 0.0097 27 1 3.8144 -5.3342 -0.8507 28 1 6.2424 -5.3362 -0.4784 29 1 7.2657 -3.6900 1.0323 30 1 7.7091 -1.0910 3.2333 31 1 3.4048 -1.9931 1.8075 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241356734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:05 Heat of formation + Delta-G solvation = -26.909379 kcal Electronic energy + Delta-G solvation = -19638.784303 eV Core-core repulsion = 16463.819086 eV Total energy + Delta-G solvation = -3174.965217 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.11012 -39.21444 -37.83898 -35.85384 -34.24703 -32.66832 -31.51396 -30.86420 -28.85096 -26.31934 -24.31826 -23.42567 -22.14426 -21.11805 -20.39446 -17.81071 -17.72773 -17.14165 -16.14116 -15.53875 -15.35668 -15.12038 -14.88387 -14.27302 -14.16445 -13.60809 -13.05007 -12.95163 -12.75927 -12.20050 -12.01562 -11.58251 -11.42065 -11.35699 -11.20491 -11.02172 -10.57614 -10.34950 -10.27490 -9.92857 -9.67121 -9.30838 -8.65361 -8.50671 -7.71019 -7.49156 -6.68613 -4.81210 1.10752 1.67327 2.42693 2.79532 2.98946 3.00292 3.05380 3.13951 3.25186 3.78676 4.26416 4.52302 5.14895 5.25623 5.36247 5.53341 5.59742 5.79534 5.89439 5.92763 6.08468 6.29018 6.30679 6.45663 6.60123 6.62005 6.74486 6.82920 6.88478 6.97812 7.19030 7.35048 7.53212 7.90636 8.12134 8.24424 8.50491 9.08214 9.68220 9.96219 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.008967 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.884799 B = 3121.737369 C = 4760.638448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.400 4.400 8 H 0.098 0.902 9 C 0.221 3.779 10 N -0.452 5.452 11 C 0.091 3.909 12 C -0.117 4.117 13 N -0.409 5.409 14 C -0.039 4.039 15 C 0.018 3.982 16 C -0.073 4.073 17 C -0.139 4.139 18 C -0.084 4.084 19 C -0.138 4.138 20 C 0.526 3.474 21 O -0.511 6.511 22 O -0.517 6.517 23 C -0.036 4.036 24 H 0.281 0.719 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.408 0.592 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.153 -2.180 0.963 9.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.161 4.161 3 Si 0.728 3.272 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.429 4.429 8 H 0.116 0.884 9 C 0.097 3.903 10 N -0.168 5.168 11 C -0.081 4.081 12 C -0.279 4.279 13 N -0.121 5.121 14 C -0.185 4.185 15 C 0.017 3.983 16 C -0.092 4.092 17 C -0.157 4.157 18 C -0.102 4.102 19 C -0.139 4.139 20 C 0.371 3.629 21 O -0.400 6.400 22 O -0.329 6.329 23 C -0.056 4.056 24 H 0.092 0.908 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.266 0.734 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.578 -2.058 0.851 8.862 hybrid contribution 0.339 1.092 0.358 1.198 sum 8.917 -0.967 1.210 9.050 Atomic orbital electron populations 1.70016 1.07520 1.29010 1.25639 1.26190 0.94996 1.01673 0.93243 0.86288 0.81176 0.79999 0.79688 1.18938 1.19614 1.17504 1.19873 0.95159 0.89087 1.38812 0.88372 1.19200 0.88997 0.92236 0.89845 1.69529 1.07496 1.24690 1.15060 1.23563 0.99961 0.90306 0.94253 1.22561 0.91205 0.98023 1.16089 1.67645 1.08389 1.29219 1.06857 1.19977 0.92216 0.90658 1.15680 1.18248 0.91682 0.93841 0.94551 1.21555 0.92881 0.97257 0.97537 1.20944 0.94906 0.99780 1.00102 1.21269 0.99472 0.93864 0.95639 1.18842 0.93973 0.98695 1.02405 1.21073 0.79604 0.82747 0.79476 1.90902 1.63116 1.38128 1.47837 1.84569 1.24602 1.58693 1.65001 1.21623 0.92361 0.97112 0.94461 0.90759 0.85064 0.85268 0.85692 0.85830 0.85366 0.73432 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.80 11.54 55.56 0.64 -17.16 16 2 C 0.07 1.64 5.49 -17.31 -0.10 1.55 16 3 Si 0.91 18.33 29.56 -169.99 -5.03 13.31 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.25 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.40 -10.18 7.45 -37.89 -0.28 -10.46 16 8 H 0.10 2.38 5.37 -52.49 -0.28 2.10 16 9 C 0.22 5.84 6.51 -84.56 -0.55 5.29 16 10 N -0.45 -11.96 8.12 -10.73 -0.09 -12.05 16 11 C 0.09 2.10 11.22 -17.29 -0.19 1.91 16 12 C -0.12 -2.60 11.22 -17.12 -0.19 -2.79 16 13 N -0.41 -9.76 10.30 -8.97 -0.09 -9.85 16 14 C -0.04 -0.96 6.41 -82.10 -0.53 -1.49 16 15 C 0.02 0.39 5.28 -104.95 -0.55 -0.16 16 16 C -0.07 -1.32 9.66 -39.07 -0.38 -1.70 16 17 C -0.14 -2.07 10.02 -39.70 -0.40 -2.47 16 18 C -0.08 -1.26 9.61 -39.06 -0.38 -1.63 16 19 C -0.14 -2.44 5.87 -105.04 -0.62 -3.06 16 20 C 0.53 8.82 8.27 34.62 0.29 9.11 16 21 O -0.51 -10.19 17.13 -19.24 -0.33 -10.52 16 22 O -0.52 -6.32 12.67 -40.52 -0.51 -6.83 16 23 C -0.04 -0.75 7.08 -38.73 -0.27 -1.03 16 24 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 25 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 26 H 0.13 2.44 8.06 -52.49 -0.42 2.02 16 27 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.13 1.58 7.60 -52.48 -0.40 1.18 16 30 H 0.41 3.02 9.11 45.56 0.42 3.44 16 31 H 0.15 3.36 6.31 -52.48 -0.33 3.03 16 LS Contribution 283.65 15.07 4.27 4.27 Total: -1.00 -30.86 283.65 -6.70 -37.57 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -1.42 Total: 8.19 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -4.15 Total: -6.93 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.46 Total: -39.06 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.84 Total: -17.35 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.86 -6.70 -37.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241356734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.658 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds