Wall clock time and date at job start Mon Mar 30 2020 01:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86803 * 119.99525 * 2 1 4 4 H 1.48497 * 109.46961 * 269.99680 * 3 2 1 5 5 H 1.48497 * 109.47233 * 29.99957 * 3 2 1 6 6 H 1.48504 * 109.47022 * 149.99985 * 3 2 1 7 7 C 1.40171 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00394 * 180.02562 * 7 2 1 9 9 C 1.40801 * 119.99698 * 0.02562 * 7 2 1 10 10 N 1.33971 * 120.28708 * 10.24392 * 9 7 2 11 11 C 1.31611 * 119.89903 * 180.02562 * 10 9 7 12 12 C 1.39196 * 120.50265 * 359.97438 * 11 10 9 13 13 N 1.32009 * 120.58541 * 0.03120 * 12 11 10 14 14 C 1.32852 * 120.08244 * 359.96752 * 13 12 11 15 15 C 1.47812 * 120.25166 * 179.97438 * 14 13 12 16 16 C 1.39813 * 120.07970 * 43.84957 * 15 14 13 17 17 C 1.38018 * 120.14827 * 179.74106 * 16 15 14 18 18 C 1.38134 * 120.31222 * 0.51553 * 17 16 15 19 19 C 1.39736 * 120.15820 * 359.76864 * 18 17 16 20 20 C 1.47750 * 120.07502 * 179.97438 * 19 18 17 21 21 O 1.21467 * 120.00174 * 179.97438 * 20 19 18 22 22 O 1.34710 * 119.99786 * 359.97438 * 20 19 18 23 23 C 1.39349 * 119.85033 * 359.97144 * 19 18 17 24 24 H 0.97000 * 120.00235 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.74976 * 180.27871 * 11 10 9 26 26 H 1.07995 * 119.71160 * 180.02562 * 12 11 10 27 27 H 1.07998 * 119.92659 * 359.97438 * 16 15 14 28 28 H 1.07996 * 119.84599 * 180.26610 * 17 16 15 29 29 H 1.08007 * 119.91881 * 179.73968 * 18 17 16 30 30 H 0.96704 * 116.99622 * 180.02562 * 22 20 19 31 31 H 1.08008 * 120.15463 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5383 1.4404 0.7001 7 6 2.0078 -1.2139 0.0005 8 1 3.0878 -1.2138 0.0010 9 6 1.3038 -2.4333 0.0005 10 7 -0.0198 -2.4493 -0.2057 11 6 -0.6703 -3.5934 -0.2036 12 6 0.0066 -4.7906 0.0111 13 7 1.3106 -4.7974 0.2164 14 6 1.9903 -3.6560 0.2191 15 6 3.4504 -3.6592 0.4492 16 6 4.2583 -4.6051 -0.1891 17 6 5.6225 -4.6061 0.0205 18 6 6.1980 -3.6808 0.8696 19 6 5.4021 -2.7334 1.5189 20 6 6.0195 -1.7450 2.4270 21 8 5.3265 -0.9218 2.9904 22 8 7.3512 -1.7569 2.6303 23 6 4.0247 -2.7230 1.3078 24 1 -0.4850 0.8400 -0.0004 25 1 -1.7366 -3.6039 -0.3746 26 1 -0.5398 -5.7221 0.0097 27 1 3.8144 -5.3342 -0.8507 28 1 6.2424 -5.3362 -0.4784 29 1 7.2657 -3.6900 1.0323 30 1 7.7091 -1.0910 3.2333 31 1 3.4048 -1.9931 1.8075 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241356734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:05 Heat of formation + Delta-G solvation = -47.732776 kcal Electronic energy + Delta-G solvation = -19639.687273 eV Core-core repulsion = 16463.819086 eV Total energy + Delta-G solvation = -3175.868187 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.47168 -40.88792 -39.27284 -37.05988 -36.06675 -34.37367 -33.24465 -32.24327 -30.48175 -28.13829 -25.67323 -25.07085 -23.93108 -22.59167 -21.77075 -19.62830 -19.03693 -18.49014 -17.92631 -16.99838 -16.77209 -16.63200 -16.45985 -15.88371 -15.70221 -15.00073 -14.71011 -14.46636 -14.27118 -13.65976 -13.56845 -13.34276 -13.06713 -12.68416 -12.58828 -12.55636 -12.14437 -11.99770 -11.69470 -11.64685 -11.53583 -11.11002 -10.22391 -9.92699 -9.49239 -9.23496 -8.49708 -6.68189 -0.25890 0.15915 0.72956 1.11624 1.31489 1.42526 1.47986 1.61382 2.06493 2.11008 2.68136 2.88511 3.63844 3.74222 4.00559 4.10781 4.14407 4.22738 4.34111 4.40878 4.62229 4.65674 4.83387 4.94445 5.05614 5.10637 5.18348 5.34111 5.49261 5.58630 5.70864 5.75763 5.96470 6.05932 6.40897 6.65148 6.99941 7.24965 7.83840 8.19182 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.008967 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.884799 B = 3121.737369 C = 4760.638448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.028 3.972 3 Si 0.974 3.026 4 H -0.252 1.252 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.424 4.424 8 H 0.099 0.901 9 C 0.191 3.809 10 N -0.488 5.488 11 C 0.077 3.923 12 C -0.115 4.115 13 N -0.423 5.423 14 C -0.047 4.047 15 C -0.016 4.016 16 C -0.074 4.074 17 C -0.122 4.122 18 C -0.059 4.059 19 C -0.148 4.148 20 C 0.534 3.466 21 O -0.553 6.553 22 O -0.495 6.495 23 C -0.055 4.055 24 H 0.288 0.712 25 H 0.162 0.838 26 H 0.166 0.834 27 H 0.128 0.872 28 H 0.172 0.828 29 H 0.170 0.830 30 H 0.432 0.568 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.963 -3.094 0.608 12.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.176 1.176 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.454 4.454 8 H 0.117 0.883 9 C 0.066 3.934 10 N -0.205 5.205 11 C -0.094 4.094 12 C -0.276 4.276 13 N -0.135 5.135 14 C -0.193 4.193 15 C -0.017 4.017 16 C -0.093 4.093 17 C -0.139 4.139 18 C -0.077 4.077 19 C -0.150 4.150 20 C 0.380 3.620 21 O -0.445 6.445 22 O -0.309 6.309 23 C -0.075 4.075 24 H 0.099 0.901 25 H 0.180 0.820 26 H 0.184 0.816 27 H 0.146 0.854 28 H 0.190 0.810 29 H 0.187 0.813 30 H 0.294 0.706 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.404 -2.998 0.498 11.802 hybrid contribution -0.422 1.196 0.508 1.366 sum 10.982 -1.802 1.006 11.174 Atomic orbital electron populations 1.70075 1.08821 1.30185 1.26933 1.26992 0.95715 1.04505 0.92441 0.85307 0.79248 0.76054 0.80089 1.17614 1.18461 1.18577 1.20064 0.95359 0.89788 1.40225 0.88342 1.19625 0.89515 0.93566 0.90686 1.69461 1.08065 1.26511 1.16443 1.24098 1.01425 0.89939 0.93903 1.23169 0.91063 0.99250 1.14156 1.67752 1.09089 1.29022 1.07643 1.20430 0.94093 0.90197 1.14545 1.18269 0.90568 0.96045 0.96834 1.21691 0.94315 0.96230 0.97104 1.21413 0.93631 0.99900 0.98957 1.21731 1.01017 0.91679 0.93317 1.19000 0.93046 0.99842 1.03062 1.20907 0.80682 0.81752 0.78609 1.90895 1.64461 1.39716 1.49441 1.84486 1.21701 1.59383 1.65297 1.21320 0.93728 0.96969 0.95439 0.90089 0.82049 0.81644 0.85420 0.81044 0.81282 0.70608 0.86988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.03 11.54 21.86 0.25 -38.78 16 2 C 0.03 1.42 5.49 85.33 0.47 1.89 16 3 Si 0.97 38.84 29.56 68.60 2.03 40.87 16 4 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 5 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.42 -22.78 7.45 23.37 0.17 -22.61 16 8 H 0.10 5.08 5.37 -2.91 -0.02 5.07 16 9 C 0.19 10.56 6.51 40.35 0.26 10.82 16 10 N -0.49 -26.90 8.12 -187.85 -1.53 -28.43 16 11 C 0.08 3.59 11.22 84.96 0.95 4.55 16 12 C -0.11 -5.11 11.22 84.90 0.95 -4.16 16 13 N -0.42 -20.42 10.30 -182.29 -1.88 -22.30 16 14 C -0.05 -2.38 6.41 42.44 0.27 -2.11 16 15 C -0.02 -0.68 5.28 -20.08 -0.11 -0.79 16 16 C -0.07 -2.57 9.66 22.60 0.22 -2.35 16 17 C -0.12 -3.09 10.02 22.19 0.22 -2.87 16 18 C -0.06 -1.53 9.61 22.61 0.22 -1.31 16 19 C -0.15 -5.05 5.87 -20.13 -0.12 -5.17 16 20 C 0.53 17.13 8.27 70.34 0.58 17.72 16 21 O -0.55 -22.23 17.13 19.94 0.34 -21.89 16 22 O -0.50 -10.28 12.67 -56.19 -0.71 -10.99 16 23 C -0.05 -2.34 7.08 22.82 0.16 -2.18 16 24 H 0.29 13.62 8.29 -92.71 -0.77 12.85 16 25 H 0.16 6.30 8.06 -2.91 -0.02 6.27 16 26 H 0.17 5.96 8.06 -2.91 -0.02 5.94 16 27 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 28 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 29 H 0.17 3.05 7.60 -2.91 -0.02 3.03 16 30 H 0.43 4.83 9.11 -74.05 -0.67 4.15 16 31 H 0.11 5.51 6.31 -2.91 -0.02 5.49 16 Total: -1.00 -71.41 283.65 3.29 -68.12 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.53 Total: 21.97 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 4.26 Total: -8.56 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -3.15 Total: -89.51 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.37 Total: -32.88 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -71.41 3.29 -68.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241356734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.383 kcal (2) G-P(sol) polarization free energy of solvation -71.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds