Wall clock time and date at job start Mon Mar 30 2020 01:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86796 * 120.00490 * 2 1 4 4 H 1.48498 * 109.46803 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47336 * 119.99482 * 3 2 1 6 6 H 1.48500 * 109.47063 * 239.99368 * 3 2 1 7 7 C 1.40051 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00304 * 173.74060 * 7 2 1 9 9 C 1.41339 * 120.00001 * 353.73659 * 7 2 1 10 10 C 1.40856 * 120.14623 * 186.03618 * 9 7 2 11 11 N 1.31861 * 119.95649 * 179.77913 * 10 9 7 12 12 C 1.32201 * 120.28391 * 0.48288 * 11 10 9 13 13 C 1.39987 * 120.29905 * 359.76996 * 12 11 10 14 14 C 1.48316 * 119.98391 * 179.97438 * 13 12 11 15 15 C 1.39518 * 120.05262 * 180.02562 * 14 13 12 16 16 C 1.38109 * 120.17524 * 179.97438 * 15 14 13 17 17 C 1.38059 * 120.28684 * 359.97438 * 16 15 14 18 18 C 1.39691 * 120.10012 * 0.02562 * 17 16 15 19 19 C 1.47739 * 120.08661 * 179.97438 * 18 17 16 20 20 O 1.21473 * 120.00205 * 180.02562 * 19 18 17 21 21 O 1.34706 * 120.00324 * 0.02562 * 19 18 17 22 22 C 1.39109 * 120.05157 * 359.74727 * 14 13 12 23 23 N 1.32533 * 120.03340 * 359.97438 * 13 12 11 24 24 H 0.97002 * 119.99388 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.02054 * 0.02562 * 10 9 7 26 26 H 1.08003 * 119.85352 * 179.75520 * 12 11 10 27 27 H 1.07994 * 119.91254 * 359.95507 * 15 14 13 28 28 H 1.08005 * 119.85774 * 179.97438 * 16 15 14 29 29 H 1.08004 * 119.95139 * 180.02562 * 17 16 15 30 30 H 0.96702 * 117.00042 * 179.97438 * 21 19 18 31 31 H 1.07997 * 120.14245 * 0.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0951 1.6963 1.2125 6 1 3.0953 1.6961 -1.2124 7 6 2.0075 -1.2129 0.0005 8 1 3.0827 -1.2159 -0.1014 9 6 1.3071 -2.4332 0.1346 10 6 2.0144 -3.6444 0.2633 11 7 1.3572 -4.7802 0.3925 12 6 0.0352 -4.7893 0.3925 13 6 -0.6792 -3.5927 0.2600 14 6 -2.1622 -3.6110 0.2603 15 6 -2.8757 -2.4194 0.1279 16 6 -4.2567 -2.4335 0.1273 17 6 -4.9409 -3.6256 0.2571 18 6 -4.2383 -4.8256 0.3904 19 6 -4.9708 -6.1011 0.5298 20 8 -4.3583 -7.1436 0.6461 21 8 -6.3178 -6.1080 0.5279 22 6 -2.8440 -4.8169 0.3868 23 7 -0.0310 -2.4435 0.1344 24 1 -0.4849 0.8401 -0.0004 25 1 3.0944 -3.6424 0.2600 26 1 -0.4960 -5.7240 0.4948 27 1 -2.3467 -1.4834 0.0259 28 1 -4.8039 -1.5080 0.0249 29 1 -6.0209 -3.6304 0.2555 30 1 -6.7526 -6.9667 0.6215 31 1 -2.2958 -5.7421 0.4854 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241357655.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:07 Heat of formation + Delta-G solvation = -28.900171 kcal Electronic energy + Delta-G solvation = -19118.505479 eV Core-core repulsion = 15943.453935 eV Total energy + Delta-G solvation = -3175.051544 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29902 -39.25387 -38.02543 -36.05173 -34.17339 -32.84207 -31.42919 -30.97192 -29.07170 -26.17289 -24.48882 -23.58460 -22.41933 -20.99957 -20.48369 -18.06709 -17.62259 -17.19314 -15.90996 -15.82611 -15.56426 -15.18800 -14.99317 -14.55756 -14.03036 -13.48626 -13.32291 -13.24954 -12.88000 -12.32390 -11.74602 -11.62415 -11.55492 -11.42316 -11.28629 -10.94396 -10.82724 -10.53787 -10.37766 -9.95839 -9.64988 -9.61669 -8.77872 -8.62452 -7.58312 -7.55566 -6.65711 -4.80481 0.91722 1.34137 2.44027 2.72466 2.95960 2.97575 3.00088 3.04235 3.10445 3.76245 4.11001 4.59236 4.93484 5.07961 5.19354 5.35838 5.60324 5.67006 5.68904 5.89736 6.05166 6.14665 6.24675 6.30886 6.43714 6.56000 6.64609 6.81951 6.87098 6.97720 7.13104 7.18801 7.52564 7.91567 7.92382 8.28715 8.53359 9.11527 9.66664 10.01020 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.004981 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.816934 B = 5619.617927 C = 6646.060868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.068 3.932 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.412 4.412 8 H 0.092 0.908 9 C 0.208 3.792 10 C -0.057 4.057 11 N -0.429 5.429 12 C -0.105 4.105 13 C 0.133 3.867 14 C -0.028 4.028 15 C -0.040 4.040 16 C -0.145 4.145 17 C -0.068 4.068 18 C -0.144 4.144 19 C 0.530 3.470 20 O -0.517 6.517 21 O -0.515 6.515 22 C -0.042 4.042 23 N -0.442 5.442 24 H 0.278 0.722 25 H 0.136 0.864 26 H 0.130 0.870 27 H 0.158 0.842 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.410 0.590 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.977 -0.999 0.146 10.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.158 4.158 3 Si 0.738 3.262 4 H -0.200 1.200 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.443 4.443 8 H 0.110 0.890 9 C 0.082 3.918 10 C -0.227 4.227 11 N -0.140 5.140 12 C -0.263 4.263 13 C -0.014 4.014 14 C -0.030 4.030 15 C -0.059 4.059 16 C -0.163 4.163 17 C -0.086 4.086 18 C -0.145 4.145 19 C 0.375 3.625 20 O -0.407 6.407 21 O -0.326 6.326 22 C -0.062 4.062 23 N -0.160 5.160 24 H 0.089 0.911 25 H 0.153 0.847 26 H 0.147 0.853 27 H 0.176 0.824 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.268 0.732 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.803 -0.751 0.133 9.832 hybrid contribution 0.060 0.108 0.085 0.150 sum -9.743 -0.643 0.218 9.766 Atomic orbital electron populations 1.70013 1.07489 1.28564 1.27453 1.26111 0.94999 1.01459 0.93251 0.86250 0.80076 0.79677 0.80152 1.20036 1.18697 1.18709 1.19620 0.95069 0.89139 1.40516 0.89013 1.19349 0.88630 0.93478 0.90374 1.23271 0.99424 0.89348 1.10677 1.67696 1.08724 1.30037 1.07521 1.22557 0.90737 0.97084 1.15944 1.20516 0.92082 0.91951 0.96841 1.18634 0.91983 0.92377 0.99964 1.22033 0.93341 0.99984 0.90515 1.21154 0.94504 0.97789 1.02849 1.21399 1.00004 0.91428 0.95784 1.18778 0.93004 0.90563 1.12144 1.20996 0.80066 0.89432 0.71975 1.90882 1.69077 1.34278 1.46456 1.84567 1.21514 1.40978 1.85588 1.21357 0.91792 0.98753 0.94265 1.69469 1.08188 1.22981 1.15344 0.91096 0.84685 0.85253 0.82416 0.85326 0.85052 0.73184 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.03 11.51 55.55 0.64 -16.39 16 2 C 0.07 1.58 5.49 -17.34 -0.10 1.48 16 3 Si 0.91 17.04 29.56 -169.99 -5.03 12.01 16 4 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.41 -10.15 9.15 -37.72 -0.35 -10.49 16 8 H 0.09 2.07 7.86 -52.48 -0.41 1.66 16 9 C 0.21 5.43 6.54 -84.84 -0.56 4.87 16 10 C -0.06 -1.40 10.98 -16.55 -0.18 -1.58 16 11 N -0.43 -10.61 10.47 -12.06 -0.13 -10.74 16 12 C -0.10 -2.47 10.61 -16.74 -0.18 -2.65 16 13 C 0.13 3.15 6.74 -82.76 -0.56 2.59 16 14 C -0.03 -0.56 5.87 -104.95 -0.62 -1.18 16 15 C -0.04 -0.73 9.58 -39.15 -0.37 -1.11 16 16 C -0.14 -2.10 10.02 -39.69 -0.40 -2.50 16 17 C -0.07 -0.92 9.61 -39.10 -0.38 -1.30 16 18 C -0.14 -2.23 5.87 -105.03 -0.62 -2.85 16 19 C 0.53 7.63 8.27 34.61 0.29 7.92 16 20 O -0.52 -8.85 17.13 -19.25 -0.33 -9.18 16 21 O -0.51 -5.33 12.67 -40.51 -0.51 -5.84 16 22 C -0.04 -0.75 8.97 -38.81 -0.35 -1.10 16 23 N -0.44 -11.42 7.15 -7.50 -0.05 -11.47 16 24 H 0.28 5.95 8.29 -40.82 -0.34 5.61 16 25 H 0.14 2.98 8.06 -52.49 -0.42 2.56 16 26 H 0.13 2.72 6.18 -52.48 -0.32 2.40 16 27 H 0.16 3.19 7.54 -52.49 -0.40 2.79 16 28 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 29 H 0.13 1.44 7.60 -52.48 -0.40 1.05 16 30 H 0.41 2.27 9.11 45.56 0.42 2.69 16 31 H 0.14 2.48 5.77 -52.49 -0.30 2.18 16 LS Contribution 285.98 15.07 4.31 4.31 Total: -1.00 -29.86 285.98 -6.85 -36.71 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -1.40 Total: 8.48 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -4.35 Total: -7.90 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.46 Total: -38.60 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.84 Total: -15.02 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.86 -6.85 -36.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241357655.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.814 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds