Wall clock time and date at job start Mon Mar 30 2020 01:32:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30732 * 1
3 3 Si 1.86796 * 120.00490 * 2 1
4 4 H 1.48498 * 109.46803 * 359.97438 * 3 2 1
5 5 H 1.48499 * 109.47336 * 119.99482 * 3 2 1
6 6 H 1.48500 * 109.47063 * 239.99368 * 3 2 1
7 7 C 1.40051 * 119.99664 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00304 * 173.74060 * 7 2 1
9 9 C 1.41339 * 120.00001 * 353.73659 * 7 2 1
10 10 C 1.40856 * 120.14623 * 186.03618 * 9 7 2
11 11 N 1.31861 * 119.95649 * 179.77913 * 10 9 7
12 12 C 1.32201 * 120.28391 * 0.48288 * 11 10 9
13 13 C 1.39987 * 120.29905 * 359.76996 * 12 11 10
14 14 C 1.48316 * 119.98391 * 179.97438 * 13 12 11
15 15 C 1.39518 * 120.05262 * 180.02562 * 14 13 12
16 16 C 1.38109 * 120.17524 * 179.97438 * 15 14 13
17 17 C 1.38059 * 120.28684 * 359.97438 * 16 15 14
18 18 C 1.39691 * 120.10012 * 0.02562 * 17 16 15
19 19 C 1.47739 * 120.08661 * 179.97438 * 18 17 16
20 20 O 1.21473 * 120.00205 * 180.02562 * 19 18 17
21 21 O 1.34706 * 120.00324 * 0.02562 * 19 18 17
22 22 C 1.39109 * 120.05157 * 359.74727 * 14 13 12
23 23 N 1.32533 * 120.03340 * 359.97438 * 13 12 11
24 24 H 0.97002 * 119.99388 * 0.02562 * 1 2 3
25 25 H 1.07998 * 120.02054 * 0.02562 * 10 9 7
26 26 H 1.08003 * 119.85352 * 179.75520 * 12 11 10
27 27 H 1.07994 * 119.91254 * 359.95507 * 15 14 13
28 28 H 1.08005 * 119.85774 * 179.97438 * 16 15 14
29 29 H 1.08004 * 119.95139 * 180.02562 * 17 16 15
30 30 H 0.96702 * 117.00042 * 179.97438 * 21 19 18
31 31 H 1.07997 * 120.14245 * 0.02562 * 22 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3073 0.0000 0.0000
3 14 2.2414 1.6176 0.0000
4 1 1.2765 2.7464 -0.0006
5 1 3.0951 1.6963 1.2125
6 1 3.0953 1.6961 -1.2124
7 6 2.0075 -1.2129 0.0005
8 1 3.0827 -1.2159 -0.1014
9 6 1.3071 -2.4332 0.1346
10 6 2.0144 -3.6444 0.2633
11 7 1.3572 -4.7802 0.3925
12 6 0.0352 -4.7893 0.3925
13 6 -0.6792 -3.5927 0.2600
14 6 -2.1622 -3.6110 0.2603
15 6 -2.8757 -2.4194 0.1279
16 6 -4.2567 -2.4335 0.1273
17 6 -4.9409 -3.6256 0.2571
18 6 -4.2383 -4.8256 0.3904
19 6 -4.9708 -6.1011 0.5298
20 8 -4.3583 -7.1436 0.6461
21 8 -6.3178 -6.1080 0.5279
22 6 -2.8440 -4.8169 0.3868
23 7 -0.0310 -2.4435 0.1344
24 1 -0.4849 0.8401 -0.0004
25 1 3.0944 -3.6424 0.2600
26 1 -0.4960 -5.7240 0.4948
27 1 -2.3467 -1.4834 0.0259
28 1 -4.8039 -1.5080 0.0249
29 1 -6.0209 -3.6304 0.2555
30 1 -6.7526 -6.9667 0.6215
31 1 -2.2958 -5.7421 0.4854
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001241357655.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:07
Heat of formation + Delta-G solvation = -48.187675 kcal
Electronic energy + Delta-G solvation = -19119.341848 eV
Core-core repulsion = 15943.453935 eV
Total energy + Delta-G solvation = -3175.887913 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 270.079 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-41.50363 -40.89991 -39.39616 -37.07618 -35.97699 -34.50507 -33.12880 -32.27997
-30.70013 -27.96786 -25.76082 -25.18068 -24.10785 -22.49282 -21.76497 -19.59784
-18.91532 -18.56935 -17.54937 -17.36759 -16.85541 -16.65393 -16.59153 -15.92269
-15.42903 -15.11813 -14.85887 -14.54883 -14.22710 -13.69803 -13.41409 -13.31565
-12.99220 -12.74562 -12.58271 -12.46946 -12.27319 -11.99326 -11.74859 -11.67144
-11.51583 -11.25373 -10.30490 -10.05651 -9.41792 -9.22102 -8.42925 -6.68685
-0.37308 -0.08813 0.83306 1.11123 1.43337 1.53852 1.55638 1.62439
2.01763 2.19791 2.66535 2.92351 3.47175 3.79302 3.84790 3.96105
4.06869 4.20951 4.23810 4.33038 4.50098 4.69681 4.80048 4.89866
5.03581 5.10547 5.15984 5.24522 5.45130 5.55838 5.63650 5.71781
5.87817 6.09539 6.44618 6.68190 6.98208 7.24077 7.80720 8.28845
Molecular weight = 270.08amu
Principal moments of inertia in cm(-1)
A = 0.026921 B = 0.004981 C = 0.004212
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1039.816934 B = 5619.617927 C = 6646.060868
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.738 5.738
2 C 0.025 3.975
3 Si 0.994 3.006
4 H -0.265 1.265
5 H -0.260 1.260
6 H -0.257 1.257
7 C -0.433 4.433
8 H 0.104 0.896
9 C 0.176 3.824
10 C -0.081 4.081
11 N -0.439 5.439
12 C -0.125 4.125
13 C 0.128 3.872
14 C -0.060 4.060
15 C -0.053 4.053
16 C -0.131 4.131
17 C -0.041 4.041
18 C -0.148 4.148
19 C 0.541 3.459
20 O -0.550 6.550
21 O -0.496 6.496
22 C -0.047 4.047
23 N -0.466 5.466
24 H 0.288 0.712
25 H 0.151 0.849
26 H 0.148 0.852
27 H 0.133 0.867
28 H 0.166 0.834
29 H 0.173 0.827
30 H 0.435 0.565
31 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.413 0.215 0.106 12.415
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.359 5.359
2 C -0.199 4.199
3 Si 0.814 3.186
4 H -0.190 1.190
5 H -0.184 1.184
6 H -0.181 1.181
7 C -0.465 4.465
8 H 0.122 0.878
9 C 0.050 3.950
10 C -0.251 4.251
11 N -0.151 5.151
12 C -0.283 4.283
13 C -0.019 4.019
14 C -0.061 4.061
15 C -0.072 4.072
16 C -0.148 4.148
17 C -0.060 4.060
18 C -0.149 4.149
19 C 0.387 3.613
20 O -0.443 6.443
21 O -0.310 6.310
22 C -0.066 4.066
23 N -0.184 5.184
24 H 0.099 0.901
25 H 0.169 0.831
26 H 0.165 0.835
27 H 0.151 0.849
28 H 0.183 0.817
29 H 0.191 0.809
30 H 0.297 0.703
31 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -12.266 0.435 0.092 12.274
hybrid contribution 0.597 -0.304 0.095 0.677
sum -11.669 0.131 0.187 11.672
Atomic orbital electron populations
1.70089 1.08974 1.30162 1.26678 1.27051 0.95863 1.04629 0.92377
0.85061 0.78614 0.74775 0.80160 1.18955 1.18420 1.18129 1.20075
0.95936 0.89752 1.40694 0.87826 1.19828 0.89365 0.94558 0.91222
1.23490 1.00233 0.89248 1.12116 1.67673 1.09444 1.30228 1.07720
1.22894 0.90652 0.98105 1.16670 1.21094 0.94255 0.91398 0.95138
1.18558 0.90160 0.94092 1.03309 1.21931 0.95172 0.98285 0.91834
1.21473 0.92689 0.99815 1.00869 1.21823 1.01800 0.89906 0.92426
1.18956 0.92189 0.92281 1.11486 1.20688 0.81162 0.88261 0.71229
1.90886 1.70133 1.35232 1.48030 1.84487 1.19030 1.42943 1.84539
1.21256 0.93150 0.97490 0.94728 1.69499 1.08244 1.23999 1.16657
0.90125 0.83124 0.83517 0.84869 0.81662 0.80923 0.70316 0.85217
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.74 -35.75 11.51 21.84 0.25 -35.50 16
2 C 0.03 1.16 5.49 85.30 0.47 1.63 16
3 Si 0.99 34.49 29.56 68.60 2.03 36.52 16
4 H -0.27 -8.68 7.11 99.48 0.71 -7.97 16
5 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16
6 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16
7 C -0.43 -21.94 9.15 23.47 0.21 -21.72 16
8 H 0.10 4.77 7.86 -2.91 -0.02 4.75 16
9 C 0.18 9.60 6.54 40.25 0.26 9.86 16
10 C -0.08 -4.21 10.98 85.33 0.94 -3.27 16
11 N -0.44 -22.73 10.47 -192.06 -2.01 -24.74 16
12 C -0.13 -6.18 10.61 85.06 0.90 -5.27 16
13 C 0.13 6.37 6.74 42.15 0.28 6.65 16
14 C -0.06 -2.45 5.87 -20.08 -0.12 -2.57 16
15 C -0.05 -1.95 9.58 22.55 0.22 -1.73 16
16 C -0.13 -3.40 10.02 22.20 0.22 -3.18 16
17 C -0.04 -0.96 9.61 22.58 0.22 -0.75 16
18 C -0.15 -4.27 5.87 -20.13 -0.12 -4.39 16
19 C 0.54 14.12 8.27 70.33 0.58 14.71 16
20 O -0.55 -18.11 17.13 19.93 0.34 -17.77 16
21 O -0.50 -8.10 12.67 -56.15 -0.71 -8.81 16
22 C -0.05 -1.67 8.97 22.77 0.20 -1.47 16
23 N -0.47 -25.20 7.15 -177.65 -1.27 -26.47 16
24 H 0.29 12.34 8.29 -92.71 -0.77 11.57 16
25 H 0.15 6.97 8.06 -2.91 -0.02 6.95 16
26 H 0.15 6.49 6.18 -2.91 -0.02 6.47 16
27 H 0.13 5.55 7.54 -2.91 -0.02 5.53 16
28 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16
29 H 0.17 2.69 7.60 -2.91 -0.02 2.67 16
30 H 0.43 2.93 9.11 -74.06 -0.67 2.25 16
31 H 0.13 4.79 5.77 -2.91 -0.02 4.77 16
Total: -1.00 -67.73 285.98 3.43 -64.30
By element:
Atomic # 1 Polarization: 23.43 SS G_CDS: 0.53 Total: 23.96 kcal
Atomic # 6 Polarization: -15.77 SS G_CDS: 4.27 Total: -11.49 kcal
Atomic # 7 Polarization: -83.68 SS G_CDS: -3.03 Total: -86.71 kcal
Atomic # 8 Polarization: -26.21 SS G_CDS: -0.37 Total: -26.58 kcal
Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.52 kcal
Total: -67.73 3.43 -64.30 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241357655.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.113 kcal
(2) G-P(sol) polarization free energy of solvation -67.732 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.619 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.301 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.188 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds