Wall clock time and date at job start Mon Mar 30 2020 01:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86796 * 120.00490 * 2 1 4 4 H 1.48498 * 109.46803 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47336 * 119.99482 * 3 2 1 6 6 H 1.48500 * 109.47063 * 239.99368 * 3 2 1 7 7 C 1.40051 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00304 * 173.74060 * 7 2 1 9 9 C 1.41339 * 120.00001 * 353.73659 * 7 2 1 10 10 C 1.40856 * 120.14623 * 186.03618 * 9 7 2 11 11 N 1.31861 * 119.95649 * 179.77913 * 10 9 7 12 12 C 1.32201 * 120.28391 * 0.48288 * 11 10 9 13 13 C 1.39987 * 120.29905 * 359.76996 * 12 11 10 14 14 C 1.48316 * 119.98391 * 179.97438 * 13 12 11 15 15 C 1.39518 * 120.05262 * 180.02562 * 14 13 12 16 16 C 1.38109 * 120.17524 * 179.97438 * 15 14 13 17 17 C 1.38059 * 120.28684 * 359.97438 * 16 15 14 18 18 C 1.39691 * 120.10012 * 0.02562 * 17 16 15 19 19 C 1.47739 * 120.08661 * 179.97438 * 18 17 16 20 20 O 1.21473 * 120.00205 * 180.02562 * 19 18 17 21 21 O 1.34706 * 120.00324 * 0.02562 * 19 18 17 22 22 C 1.39109 * 120.05157 * 359.74727 * 14 13 12 23 23 N 1.32533 * 120.03340 * 359.97438 * 13 12 11 24 24 H 0.97002 * 119.99388 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.02054 * 0.02562 * 10 9 7 26 26 H 1.08003 * 119.85352 * 179.75520 * 12 11 10 27 27 H 1.07994 * 119.91254 * 359.95507 * 15 14 13 28 28 H 1.08005 * 119.85774 * 179.97438 * 16 15 14 29 29 H 1.08004 * 119.95139 * 180.02562 * 17 16 15 30 30 H 0.96702 * 117.00042 * 179.97438 * 21 19 18 31 31 H 1.07997 * 120.14245 * 0.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0951 1.6963 1.2125 6 1 3.0953 1.6961 -1.2124 7 6 2.0075 -1.2129 0.0005 8 1 3.0827 -1.2159 -0.1014 9 6 1.3071 -2.4332 0.1346 10 6 2.0144 -3.6444 0.2633 11 7 1.3572 -4.7802 0.3925 12 6 0.0352 -4.7893 0.3925 13 6 -0.6792 -3.5927 0.2600 14 6 -2.1622 -3.6110 0.2603 15 6 -2.8757 -2.4194 0.1279 16 6 -4.2567 -2.4335 0.1273 17 6 -4.9409 -3.6256 0.2571 18 6 -4.2383 -4.8256 0.3904 19 6 -4.9708 -6.1011 0.5298 20 8 -4.3583 -7.1436 0.6461 21 8 -6.3178 -6.1080 0.5279 22 6 -2.8440 -4.8169 0.3868 23 7 -0.0310 -2.4435 0.1344 24 1 -0.4849 0.8401 -0.0004 25 1 3.0944 -3.6424 0.2600 26 1 -0.4960 -5.7240 0.4948 27 1 -2.3467 -1.4834 0.0259 28 1 -4.8039 -1.5080 0.0249 29 1 -6.0209 -3.6304 0.2555 30 1 -6.7526 -6.9667 0.6215 31 1 -2.2958 -5.7421 0.4854 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241357655.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:07 Heat of formation + Delta-G solvation = -48.187675 kcal Electronic energy + Delta-G solvation = -19119.341848 eV Core-core repulsion = 15943.453935 eV Total energy + Delta-G solvation = -3175.887913 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.50363 -40.89991 -39.39616 -37.07618 -35.97699 -34.50507 -33.12880 -32.27997 -30.70013 -27.96786 -25.76082 -25.18068 -24.10785 -22.49282 -21.76497 -19.59784 -18.91532 -18.56935 -17.54937 -17.36759 -16.85541 -16.65393 -16.59153 -15.92269 -15.42903 -15.11813 -14.85887 -14.54883 -14.22710 -13.69803 -13.41409 -13.31565 -12.99220 -12.74562 -12.58271 -12.46946 -12.27319 -11.99326 -11.74859 -11.67144 -11.51583 -11.25373 -10.30490 -10.05651 -9.41792 -9.22102 -8.42925 -6.68685 -0.37308 -0.08813 0.83306 1.11123 1.43337 1.53852 1.55638 1.62439 2.01763 2.19791 2.66535 2.92351 3.47175 3.79302 3.84790 3.96105 4.06869 4.20951 4.23810 4.33038 4.50098 4.69681 4.80048 4.89866 5.03581 5.10547 5.15984 5.24522 5.45130 5.55838 5.63650 5.71781 5.87817 6.09539 6.44618 6.68190 6.98208 7.24077 7.80720 8.28845 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.004981 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.816934 B = 5619.617927 C = 6646.060868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.025 3.975 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.260 1.260 6 H -0.257 1.257 7 C -0.433 4.433 8 H 0.104 0.896 9 C 0.176 3.824 10 C -0.081 4.081 11 N -0.439 5.439 12 C -0.125 4.125 13 C 0.128 3.872 14 C -0.060 4.060 15 C -0.053 4.053 16 C -0.131 4.131 17 C -0.041 4.041 18 C -0.148 4.148 19 C 0.541 3.459 20 O -0.550 6.550 21 O -0.496 6.496 22 C -0.047 4.047 23 N -0.466 5.466 24 H 0.288 0.712 25 H 0.151 0.849 26 H 0.148 0.852 27 H 0.133 0.867 28 H 0.166 0.834 29 H 0.173 0.827 30 H 0.435 0.565 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.413 0.215 0.106 12.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.199 4.199 3 Si 0.814 3.186 4 H -0.190 1.190 5 H -0.184 1.184 6 H -0.181 1.181 7 C -0.465 4.465 8 H 0.122 0.878 9 C 0.050 3.950 10 C -0.251 4.251 11 N -0.151 5.151 12 C -0.283 4.283 13 C -0.019 4.019 14 C -0.061 4.061 15 C -0.072 4.072 16 C -0.148 4.148 17 C -0.060 4.060 18 C -0.149 4.149 19 C 0.387 3.613 20 O -0.443 6.443 21 O -0.310 6.310 22 C -0.066 4.066 23 N -0.184 5.184 24 H 0.099 0.901 25 H 0.169 0.831 26 H 0.165 0.835 27 H 0.151 0.849 28 H 0.183 0.817 29 H 0.191 0.809 30 H 0.297 0.703 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.266 0.435 0.092 12.274 hybrid contribution 0.597 -0.304 0.095 0.677 sum -11.669 0.131 0.187 11.672 Atomic orbital electron populations 1.70089 1.08974 1.30162 1.26678 1.27051 0.95863 1.04629 0.92377 0.85061 0.78614 0.74775 0.80160 1.18955 1.18420 1.18129 1.20075 0.95936 0.89752 1.40694 0.87826 1.19828 0.89365 0.94558 0.91222 1.23490 1.00233 0.89248 1.12116 1.67673 1.09444 1.30228 1.07720 1.22894 0.90652 0.98105 1.16670 1.21094 0.94255 0.91398 0.95138 1.18558 0.90160 0.94092 1.03309 1.21931 0.95172 0.98285 0.91834 1.21473 0.92689 0.99815 1.00869 1.21823 1.01800 0.89906 0.92426 1.18956 0.92189 0.92281 1.11486 1.20688 0.81162 0.88261 0.71229 1.90886 1.70133 1.35232 1.48030 1.84487 1.19030 1.42943 1.84539 1.21256 0.93150 0.97490 0.94728 1.69499 1.08244 1.23999 1.16657 0.90125 0.83124 0.83517 0.84869 0.81662 0.80923 0.70316 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -35.75 11.51 21.84 0.25 -35.50 16 2 C 0.03 1.16 5.49 85.30 0.47 1.63 16 3 Si 0.99 34.49 29.56 68.60 2.03 36.52 16 4 H -0.27 -8.68 7.11 99.48 0.71 -7.97 16 5 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 6 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 7 C -0.43 -21.94 9.15 23.47 0.21 -21.72 16 8 H 0.10 4.77 7.86 -2.91 -0.02 4.75 16 9 C 0.18 9.60 6.54 40.25 0.26 9.86 16 10 C -0.08 -4.21 10.98 85.33 0.94 -3.27 16 11 N -0.44 -22.73 10.47 -192.06 -2.01 -24.74 16 12 C -0.13 -6.18 10.61 85.06 0.90 -5.27 16 13 C 0.13 6.37 6.74 42.15 0.28 6.65 16 14 C -0.06 -2.45 5.87 -20.08 -0.12 -2.57 16 15 C -0.05 -1.95 9.58 22.55 0.22 -1.73 16 16 C -0.13 -3.40 10.02 22.20 0.22 -3.18 16 17 C -0.04 -0.96 9.61 22.58 0.22 -0.75 16 18 C -0.15 -4.27 5.87 -20.13 -0.12 -4.39 16 19 C 0.54 14.12 8.27 70.33 0.58 14.71 16 20 O -0.55 -18.11 17.13 19.93 0.34 -17.77 16 21 O -0.50 -8.10 12.67 -56.15 -0.71 -8.81 16 22 C -0.05 -1.67 8.97 22.77 0.20 -1.47 16 23 N -0.47 -25.20 7.15 -177.65 -1.27 -26.47 16 24 H 0.29 12.34 8.29 -92.71 -0.77 11.57 16 25 H 0.15 6.97 8.06 -2.91 -0.02 6.95 16 26 H 0.15 6.49 6.18 -2.91 -0.02 6.47 16 27 H 0.13 5.55 7.54 -2.91 -0.02 5.53 16 28 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.17 2.69 7.60 -2.91 -0.02 2.67 16 30 H 0.43 2.93 9.11 -74.06 -0.67 2.25 16 31 H 0.13 4.79 5.77 -2.91 -0.02 4.77 16 Total: -1.00 -67.73 285.98 3.43 -64.30 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.53 Total: 23.96 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 4.27 Total: -11.49 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -3.03 Total: -86.71 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.37 Total: -26.58 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.52 kcal Total: -67.73 3.43 -64.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241357655.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.113 kcal (2) G-P(sol) polarization free energy of solvation -67.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds