Wall clock time and date at job start Mon Mar 30 2020 01:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30663 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48497 * 109.47172 * 95.01422 * 3 2 1 5 5 H 1.48502 * 109.47138 * 215.01090 * 3 2 1 6 6 H 1.48498 * 109.47319 * 335.00874 * 3 2 1 7 7 C 1.40143 * 119.99812 * 180.27496 * 2 1 3 8 8 H 1.08001 * 119.99637 * 173.59427 * 7 2 1 9 9 C 1.41097 * 120.00410 * 353.60197 * 7 2 1 10 10 N 1.33647 * 119.13103 * 6.00218 * 9 7 2 11 11 C 1.31584 * 120.82461 * 179.75952 * 10 9 7 12 12 C 1.40421 * 119.09999 * 0.51118 * 11 10 9 13 13 C 1.47952 * 120.79215 * 179.72739 * 12 11 10 14 14 C 1.39771 * 120.07294 * 179.74938 * 13 12 11 15 15 C 1.38031 * 120.14854 * 179.69552 * 14 13 12 16 16 C 1.38124 * 120.31083 * 0.59606 * 15 14 13 17 17 C 1.39741 * 120.14950 * 359.67911 * 16 15 14 18 18 C 1.47755 * 120.07654 * 180.02562 * 17 16 15 19 19 O 1.21472 * 119.99770 * 179.97438 * 18 17 16 20 20 O 1.34703 * 120.00127 * 359.97438 * 18 17 16 21 21 C 1.39365 * 119.84496 * 0.02562 * 17 16 15 22 22 C 1.40416 * 118.41545 * 359.74359 * 12 11 10 23 23 N 1.31589 * 119.09715 * 0.02562 * 22 12 11 24 24 H 0.96998 * 120.00198 * 359.72629 * 1 2 3 25 25 H 1.08003 * 120.45222 * 180.25483 * 11 10 9 26 26 H 1.08000 * 119.92385 * 359.96848 * 14 13 12 27 27 H 1.08003 * 119.84091 * 180.27588 * 15 14 13 28 28 H 1.08005 * 119.92772 * 179.69876 * 16 15 14 29 29 H 0.96708 * 117.00221 * 179.97438 * 20 18 17 30 30 H 1.07997 * 120.15367 * 180.02562 * 21 17 16 31 31 H 1.08001 * 120.45104 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5940 1.9853 1.3947 5 1 3.4812 1.4731 -0.8033 6 1 1.3891 2.6809 -0.5915 7 6 2.0073 -1.2137 -0.0058 8 1 3.0823 -1.2161 -0.1102 9 6 1.3085 -2.4325 0.1245 10 7 -0.0279 -2.4187 0.1307 11 6 -0.7132 -3.5362 0.2457 12 6 -0.0214 -4.7514 0.3735 13 6 -0.7542 -6.0293 0.5112 14 6 -0.0504 -7.2308 0.6322 15 6 -0.7325 -8.4232 0.7670 16 6 -2.1137 -8.4397 0.7710 17 6 -2.8302 -7.2466 0.6451 18 6 -4.3076 -7.2660 0.6501 19 8 -4.9290 -6.2279 0.5410 20 8 -4.9654 -8.4347 0.7756 21 6 -2.1479 -6.0383 0.5148 22 6 1.3825 -4.7249 0.3680 23 7 2.0002 -3.5696 0.2445 24 1 -0.4850 0.8400 0.0040 25 1 -1.7931 -3.5185 0.2459 26 1 1.0295 -7.2257 0.6247 27 1 -0.1837 -9.3482 0.8647 28 1 -2.6411 -9.3768 0.8720 29 1 -5.9317 -8.3971 0.7740 30 1 -2.6967 -5.1132 0.4175 31 1 1.9476 -5.6403 0.4638 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241358965.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:09 Heat of formation + Delta-G solvation = -25.817231 kcal Electronic energy + Delta-G solvation = -18818.590502 eV Core-core repulsion = 15643.672644 eV Total energy + Delta-G solvation = -3174.917858 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27640 -39.24647 -38.02910 -36.04369 -34.15178 -32.37108 -32.02747 -30.93579 -29.11809 -26.22207 -24.79865 -22.91182 -22.81630 -20.95942 -20.53637 -18.13699 -17.86896 -17.31416 -16.18314 -15.90657 -15.55211 -15.19222 -14.71107 -14.49087 -13.89085 -13.35081 -13.27799 -13.22729 -12.82044 -12.40547 -12.33457 -11.61192 -11.55606 -11.41742 -11.36740 -11.03329 -10.84772 -10.50310 -10.42760 -9.83788 -9.38007 -9.32185 -9.09856 -8.82630 -7.51893 -7.49451 -6.77427 -4.90250 0.89285 1.42322 2.42295 2.79264 2.87445 2.93944 2.98265 3.06195 3.06332 3.71585 4.10822 4.52194 5.00238 5.13626 5.20112 5.42307 5.54988 5.64128 5.72561 5.74345 5.83856 6.02925 6.13603 6.29062 6.41479 6.49950 6.58430 6.65232 6.77288 6.91838 7.13455 7.26011 7.46306 7.92961 7.93101 8.25856 8.33547 8.90213 9.87599 10.06263 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031880 B = 0.004131 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.094160 B = 6776.042802 C = 7640.561504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.058 3.942 3 Si 0.924 3.076 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.273 1.273 7 C -0.370 4.370 8 H 0.098 0.902 9 C 0.377 3.623 10 N -0.507 5.507 11 C 0.184 3.816 12 C -0.337 4.337 13 C 0.030 3.970 14 C -0.113 4.113 15 C -0.120 4.120 16 C -0.105 4.105 17 C -0.118 4.118 18 C 0.527 3.473 19 O -0.515 6.515 20 O -0.515 6.515 21 C -0.081 4.081 22 C 0.191 3.809 23 N -0.592 5.592 24 H 0.281 0.719 25 H 0.133 0.867 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.410 0.590 30 H 0.135 0.865 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 -10.930 1.256 11.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.171 4.171 3 Si 0.747 3.253 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.197 1.197 7 C -0.403 4.403 8 H 0.116 0.884 9 C 0.145 3.855 10 N -0.223 5.223 11 C 0.007 3.993 12 C -0.347 4.347 13 C 0.029 3.971 14 C -0.131 4.131 15 C -0.138 4.138 16 C -0.124 4.124 17 C -0.119 4.119 18 C 0.372 3.628 19 O -0.405 6.405 20 O -0.327 6.327 21 C -0.099 4.099 22 C 0.015 3.985 23 N -0.310 5.310 24 H 0.093 0.907 25 H 0.150 0.850 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.268 0.732 30 H 0.152 0.848 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.616 -9.419 1.101 10.149 hybrid contribution -0.960 -0.252 0.129 1.001 sum -4.576 -9.671 1.230 10.769 Atomic orbital electron populations 1.70111 1.07547 1.29031 1.24471 1.26267 0.95153 1.01903 0.93760 0.86049 0.80241 0.79154 0.79848 1.18883 1.18095 1.19750 1.19559 0.95584 0.87972 1.37168 0.88373 1.19975 0.85940 0.90891 0.88657 1.69363 1.08263 1.26456 1.18223 1.23103 0.99195 0.87925 0.89103 1.19655 0.95302 0.93176 1.26549 1.18623 0.91563 0.92798 0.94166 1.21447 1.00210 0.91741 0.99724 1.20945 0.93845 0.97947 1.01083 1.21199 0.94208 0.96853 1.00133 1.18849 0.88093 0.95309 1.09685 1.21123 0.89229 0.80560 0.71918 1.90889 1.69455 1.33904 1.46212 1.84573 1.26793 1.35758 1.85547 1.21296 0.93740 0.96769 0.98144 1.22670 0.90390 0.95777 0.89634 1.68660 1.40714 0.98734 1.22866 0.90712 0.84958 0.85639 0.85833 0.85434 0.73247 0.84769 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.41 11.43 55.56 0.64 -16.78 16 2 C 0.06 1.40 5.49 -17.33 -0.10 1.31 16 3 Si 0.92 17.48 29.56 -169.99 -5.03 12.45 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.26 -4.78 7.11 56.52 0.40 -4.37 16 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.37 -9.66 9.35 -37.78 -0.35 -10.02 16 8 H 0.10 2.43 7.86 -52.49 -0.41 2.02 16 9 C 0.38 10.26 7.35 -158.17 -1.16 9.10 16 10 N -0.51 -13.65 7.86 -12.41 -0.10 -13.75 16 11 C 0.18 4.34 10.70 -16.84 -0.18 4.16 16 12 C -0.34 -7.19 5.94 -104.28 -0.62 -7.81 16 13 C 0.03 0.55 5.88 -104.92 -0.62 -0.07 16 14 C -0.11 -1.68 9.45 -39.08 -0.37 -2.05 16 15 C -0.12 -1.53 10.02 -39.70 -0.40 -1.92 16 16 C -0.11 -1.38 9.61 -39.06 -0.38 -1.75 16 17 C -0.12 -1.81 5.87 -105.03 -0.62 -2.43 16 18 C 0.53 7.66 8.27 34.62 0.29 7.95 16 19 O -0.52 -9.00 17.13 -19.24 -0.33 -9.33 16 20 O -0.52 -5.41 12.67 -40.50 -0.51 -5.92 16 21 C -0.08 -1.40 9.00 -38.74 -0.35 -1.75 16 22 C 0.19 4.17 10.70 -16.84 -0.18 3.99 16 23 N -0.59 -15.04 10.34 -12.41 -0.13 -15.17 16 24 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 25 H 0.13 2.82 6.33 -52.48 -0.33 2.48 16 26 H 0.13 1.67 6.27 -52.49 -0.33 1.34 16 27 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 28 H 0.13 1.39 7.60 -52.48 -0.40 0.99 16 29 H 0.41 2.35 9.11 45.56 0.42 2.76 16 30 H 0.13 2.42 5.87 -52.49 -0.31 2.11 16 31 H 0.13 2.37 6.32 -52.49 -0.33 2.04 16 LS Contribution 283.62 15.07 4.27 4.27 Total: -1.00 -31.05 283.62 -7.47 -38.52 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -1.25 Total: 6.98 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -5.03 Total: -1.29 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.41 Total: -45.69 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.84 Total: -15.25 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.05 -7.47 -38.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241358965.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.703 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds