Wall clock time and date at job start Mon Mar 30 2020 01:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30663 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48497 * 109.47172 * 95.01422 * 3 2 1 5 5 H 1.48502 * 109.47138 * 215.01090 * 3 2 1 6 6 H 1.48498 * 109.47319 * 335.00874 * 3 2 1 7 7 C 1.40143 * 119.99812 * 180.27496 * 2 1 3 8 8 H 1.08001 * 119.99637 * 173.59427 * 7 2 1 9 9 C 1.41097 * 120.00410 * 353.60197 * 7 2 1 10 10 N 1.33647 * 119.13103 * 6.00218 * 9 7 2 11 11 C 1.31584 * 120.82461 * 179.75952 * 10 9 7 12 12 C 1.40421 * 119.09999 * 0.51118 * 11 10 9 13 13 C 1.47952 * 120.79215 * 179.72739 * 12 11 10 14 14 C 1.39771 * 120.07294 * 179.74938 * 13 12 11 15 15 C 1.38031 * 120.14854 * 179.69552 * 14 13 12 16 16 C 1.38124 * 120.31083 * 0.59606 * 15 14 13 17 17 C 1.39741 * 120.14950 * 359.67911 * 16 15 14 18 18 C 1.47755 * 120.07654 * 180.02562 * 17 16 15 19 19 O 1.21472 * 119.99770 * 179.97438 * 18 17 16 20 20 O 1.34703 * 120.00127 * 359.97438 * 18 17 16 21 21 C 1.39365 * 119.84496 * 0.02562 * 17 16 15 22 22 C 1.40416 * 118.41545 * 359.74359 * 12 11 10 23 23 N 1.31589 * 119.09715 * 0.02562 * 22 12 11 24 24 H 0.96998 * 120.00198 * 359.72629 * 1 2 3 25 25 H 1.08003 * 120.45222 * 180.25483 * 11 10 9 26 26 H 1.08000 * 119.92385 * 359.96848 * 14 13 12 27 27 H 1.08003 * 119.84091 * 180.27588 * 15 14 13 28 28 H 1.08005 * 119.92772 * 179.69876 * 16 15 14 29 29 H 0.96708 * 117.00221 * 179.97438 * 20 18 17 30 30 H 1.07997 * 120.15367 * 180.02562 * 21 17 16 31 31 H 1.08001 * 120.45104 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5940 1.9853 1.3947 5 1 3.4812 1.4731 -0.8033 6 1 1.3891 2.6809 -0.5915 7 6 2.0073 -1.2137 -0.0058 8 1 3.0823 -1.2161 -0.1102 9 6 1.3085 -2.4325 0.1245 10 7 -0.0279 -2.4187 0.1307 11 6 -0.7132 -3.5362 0.2457 12 6 -0.0214 -4.7514 0.3735 13 6 -0.7542 -6.0293 0.5112 14 6 -0.0504 -7.2308 0.6322 15 6 -0.7325 -8.4232 0.7670 16 6 -2.1137 -8.4397 0.7710 17 6 -2.8302 -7.2466 0.6451 18 6 -4.3076 -7.2660 0.6501 19 8 -4.9290 -6.2279 0.5410 20 8 -4.9654 -8.4347 0.7756 21 6 -2.1479 -6.0383 0.5148 22 6 1.3825 -4.7249 0.3680 23 7 2.0002 -3.5696 0.2445 24 1 -0.4850 0.8400 0.0040 25 1 -1.7931 -3.5185 0.2459 26 1 1.0295 -7.2257 0.6247 27 1 -0.1837 -9.3482 0.8647 28 1 -2.6411 -9.3768 0.8720 29 1 -5.9317 -8.3971 0.7740 30 1 -2.6967 -5.1132 0.4175 31 1 1.9476 -5.6403 0.4638 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241358965.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:09 Heat of formation + Delta-G solvation = -46.098435 kcal Electronic energy + Delta-G solvation = -18819.469961 eV Core-core repulsion = 15643.672644 eV Total energy + Delta-G solvation = -3175.797317 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.46544 -40.90062 -39.35068 -37.09486 -35.89269 -34.01695 -33.72480 -32.16957 -30.73845 -27.92387 -26.08482 -24.47633 -24.43971 -22.38878 -21.78256 -19.89684 -19.00528 -18.54742 -17.90135 -17.31232 -16.78760 -16.66676 -16.11875 -15.86974 -15.23908 -15.09032 -14.65216 -14.49401 -14.36064 -13.92311 -13.69640 -13.18930 -12.98598 -12.75973 -12.61260 -12.60654 -12.24205 -11.96778 -11.67134 -11.46388 -11.25500 -11.08168 -10.67407 -9.99765 -9.35183 -9.10643 -8.54432 -6.77547 -0.31146 0.02833 0.94415 1.04365 1.38377 1.47737 1.55023 1.65862 2.05106 2.15691 2.62704 2.98703 3.82478 3.83410 3.88465 3.90160 4.03475 4.13830 4.30094 4.32080 4.41572 4.50975 4.84047 4.96403 5.06678 5.07774 5.21836 5.32528 5.46976 5.56508 5.70866 5.76422 5.97535 6.05637 6.41682 6.49986 6.96628 7.07838 8.10880 8.25227 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031880 B = 0.004131 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.094160 B = 6776.042802 C = 7640.561504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.019 3.981 3 Si 1.005 2.995 4 H -0.259 1.259 5 H -0.252 1.252 6 H -0.262 1.262 7 C -0.415 4.415 8 H 0.098 0.902 9 C 0.350 3.650 10 N -0.542 5.542 11 C 0.158 3.842 12 C -0.318 4.318 13 C -0.003 4.003 14 C -0.101 4.101 15 C -0.110 4.110 16 C -0.078 4.078 17 C -0.135 4.135 18 C 0.534 3.466 19 O -0.555 6.555 20 O -0.497 6.497 21 C -0.093 4.093 22 C 0.179 3.821 23 N -0.615 5.615 24 H 0.288 0.712 25 H 0.141 0.859 26 H 0.145 0.855 27 H 0.170 0.830 28 H 0.162 0.838 29 H 0.433 0.567 30 H 0.112 0.888 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 -14.183 1.693 14.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.206 4.206 3 Si 0.823 3.177 4 H -0.183 1.183 5 H -0.175 1.175 6 H -0.186 1.186 7 C -0.449 4.449 8 H 0.116 0.884 9 C 0.117 3.883 10 N -0.259 5.259 11 C -0.016 4.016 12 C -0.327 4.327 13 C -0.005 4.005 14 C -0.119 4.119 15 C -0.128 4.128 16 C -0.096 4.096 17 C -0.136 4.136 18 C 0.380 3.620 19 O -0.448 6.448 20 O -0.311 6.311 21 C -0.112 4.112 22 C 0.006 3.994 23 N -0.334 5.334 24 H 0.099 0.901 25 H 0.158 0.842 26 H 0.163 0.837 27 H 0.187 0.813 28 H 0.180 0.820 29 H 0.295 0.705 30 H 0.130 0.870 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.559 -12.779 1.545 13.355 hybrid contribution -1.205 0.259 0.037 1.233 sum -4.764 -12.520 1.583 13.489 Atomic orbital electron populations 1.70187 1.09259 1.30352 1.25967 1.27231 0.95891 1.05058 0.92376 0.84890 0.78784 0.74082 0.79990 1.18341 1.17494 1.18594 1.19847 0.95803 0.89034 1.40178 0.88434 1.20386 0.86402 0.92032 0.89506 1.69310 1.08600 1.28088 1.19868 1.23429 0.99818 0.88627 0.89775 1.19948 0.95488 0.94058 1.23214 1.18513 0.91753 0.92441 0.97782 1.21747 1.01294 0.91243 0.97619 1.21429 0.93786 0.98660 0.98907 1.21680 0.94647 0.97010 0.96259 1.18994 0.88907 0.95390 1.10291 1.21000 0.89103 0.80863 0.71045 1.90887 1.70164 1.35542 1.48162 1.84495 1.28857 1.33241 1.84486 1.21203 0.93768 0.97209 0.98979 1.23350 0.91017 0.96242 0.88832 1.68680 1.41218 0.99426 1.24069 0.90055 0.84176 0.83734 0.81262 0.82020 0.70535 0.86989 0.80698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.12 11.43 21.86 0.25 -38.87 16 2 C 0.02 0.97 5.49 85.33 0.47 1.43 16 3 Si 1.00 36.90 29.56 68.60 2.03 38.93 16 4 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 5 H -0.25 -8.87 7.11 99.48 0.71 -8.17 16 6 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 7 C -0.42 -22.88 9.35 23.43 0.22 -22.66 16 8 H 0.10 5.11 7.86 -2.91 -0.02 5.09 16 9 C 0.35 20.13 7.35 134.91 0.99 21.12 16 10 N -0.54 -30.97 7.86 -193.17 -1.52 -32.49 16 11 C 0.16 7.89 10.70 85.26 0.91 8.80 16 12 C -0.32 -13.79 5.94 -19.64 -0.12 -13.90 16 13 C 0.00 -0.11 5.88 -20.06 -0.12 -0.23 16 14 C -0.10 -2.62 9.45 22.59 0.21 -2.41 16 15 C -0.11 -2.16 10.02 22.19 0.22 -1.94 16 16 C -0.08 -1.64 9.61 22.61 0.22 -1.42 16 17 C -0.13 -3.80 5.87 -20.13 -0.12 -3.92 16 18 C 0.53 14.47 8.27 70.34 0.58 15.05 16 19 O -0.55 -19.29 17.13 19.93 0.34 -18.95 16 20 O -0.50 -8.56 12.67 -56.12 -0.71 -9.28 16 21 C -0.09 -3.19 9.00 22.81 0.21 -2.99 16 22 C 0.18 7.83 10.70 85.26 0.91 8.74 16 23 N -0.61 -32.29 10.34 -193.18 -2.00 -34.28 16 24 H 0.29 13.61 8.29 -92.71 -0.77 12.85 16 25 H 0.14 6.47 6.33 -2.91 -0.02 6.45 16 26 H 0.15 3.19 6.27 -2.91 -0.02 3.17 16 27 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 28 H 0.16 2.39 7.60 -2.91 -0.02 2.37 16 29 H 0.43 3.42 9.11 -74.05 -0.67 2.74 16 30 H 0.11 4.27 5.87 -2.91 -0.02 4.26 16 31 H 0.18 5.87 6.32 -2.91 -0.02 5.85 16 Total: -1.00 -73.05 283.62 3.52 -69.53 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.54 Total: 19.72 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 4.59 Total: 5.69 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -3.26 Total: -105.64 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.37 Total: -28.22 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -73.05 3.52 -69.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241358965.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.428 kcal (2) G-P(sol) polarization free energy of solvation -73.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds