Wall clock time and date at job start Mon Mar 30 2020 00:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31104 * 1 3 3 Si 1.86802 * 119.99669 * 2 1 4 4 H 1.48505 * 109.46887 * 266.50539 * 3 2 1 5 5 H 1.48496 * 109.47176 * 26.51013 * 3 2 1 6 6 H 1.48503 * 109.46713 * 146.51125 * 3 2 1 7 7 C 1.39635 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00423 * 350.00645 * 7 2 1 9 9 C 1.40988 * 119.99499 * 170.00080 * 7 2 1 10 10 C 1.39019 * 126.93207 * 335.32766 * 9 7 2 11 11 N 1.35600 * 109.22674 * 179.77080 * 10 9 7 12 12 H 0.97002 * 124.70695 * 180.28555 * 11 10 9 13 13 C 1.38176 * 110.58517 * 0.42622 * 11 10 9 14 14 C 1.39176 * 132.72384 * 179.87258 * 13 11 10 15 15 C 1.38051 * 120.28806 * 179.70262 * 14 13 11 16 16 C 1.38277 * 120.80203 * 0.02562 * 15 14 13 17 17 C 1.39390 * 120.07712 * 359.95312 * 16 15 14 18 18 C 1.47625 * 120.30365 * 180.02562 * 17 16 15 19 19 C 1.35202 * 126.10994 * 303.53332 * 18 17 16 20 20 N 1.31404 * 114.20156 * 179.97438 * 19 18 17 21 21 C 1.29143 * 117.29700 * 0.02562 * 20 19 18 22 22 S 1.70947 * 110.39287 * 359.74621 * 21 20 19 23 23 C 1.40205 * 107.88572 * 359.58019 * 13 11 10 24 24 H 0.96999 * 120.00255 * 0.02562 * 1 2 3 25 25 H 1.07999 * 125.39116 * 0.06559 * 10 9 7 26 26 H 1.07998 * 119.85832 * 359.68375 * 14 13 11 27 27 H 1.08007 * 119.59591 * 179.97438 * 15 14 13 28 28 H 1.08008 * 119.96333 * 179.97438 * 16 15 14 29 29 H 1.08006 * 122.89741 * 359.96444 * 19 18 17 30 30 H 1.07996 * 124.80305 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2450 1.6178 0.0000 4 1 2.5663 2.0038 -1.3975 5 1 1.4074 2.6729 0.6249 6 1 3.5037 1.4626 0.7726 7 6 2.0092 -1.2093 0.0005 8 1 1.4815 -2.1375 0.1633 9 6 3.4030 -1.2186 -0.2115 10 6 4.1524 -0.2586 -0.8820 11 7 5.4585 -0.6229 -0.8696 12 1 6.1783 -0.1114 -1.2711 13 6 5.6213 -1.8253 -0.2086 14 6 6.7390 -2.6073 0.0674 15 6 6.6060 -3.7889 0.7688 16 6 5.3663 -4.2162 1.2077 17 6 4.2307 -3.4517 0.9451 18 6 2.9048 -3.9028 1.4118 19 6 2.3196 -5.0874 1.1249 20 7 1.1326 -5.2469 1.6656 21 6 0.6761 -4.2787 2.3881 22 16 1.8049 -2.9963 2.4478 23 6 4.3595 -2.2484 0.2326 24 1 -0.4850 0.8400 -0.0004 25 1 3.7575 0.6380 -1.3364 26 1 7.7145 -2.2886 -0.2688 27 1 7.4808 -4.3873 0.9764 28 1 5.2778 -5.1431 1.7549 29 1 2.7874 -5.8377 0.5046 30 1 -0.2813 -4.2810 2.8879 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241500628.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:24 Heat of formation + Delta-G solvation = 100.502997 kcal Electronic energy + Delta-G solvation = -17679.171202 eV Core-core repulsion = 14952.483871 eV Total energy + Delta-G solvation = -2726.687331 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.052 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.10068 -38.74839 -36.08607 -33.62112 -32.01873 -29.89996 -28.46618 -27.74754 -25.10956 -24.21472 -21.97127 -21.19314 -19.73267 -19.17023 -17.97796 -16.54944 -16.48687 -15.59509 -15.05350 -14.42051 -14.26814 -13.81497 -13.43848 -13.24480 -13.18343 -13.02746 -12.77022 -11.77395 -11.61382 -11.21973 -11.05008 -10.93470 -10.60620 -10.49461 -10.25242 -9.75482 -9.29601 -9.03674 -8.76056 -8.26977 -8.02022 -7.38164 -6.82757 -6.68355 -4.16361 1.14704 1.84001 2.21667 2.39791 2.65446 3.02196 3.18171 3.27770 3.51226 3.71807 4.04255 4.18420 4.55827 4.98581 5.28598 5.34604 5.51312 5.69324 5.83056 5.91338 6.03756 6.15713 6.36567 6.48259 6.57358 6.80237 6.83827 7.07388 7.14503 7.31757 7.53067 7.69175 8.09824 8.35973 8.37795 8.59046 8.76518 8.96699 10.32552 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.011818 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.922030 B = 2368.628573 C = 4067.541980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.084 3.916 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.248 1.248 7 C -0.422 4.422 8 H 0.094 0.906 9 C 0.035 3.965 10 C -0.164 4.164 11 N -0.583 5.583 12 H 0.398 0.602 13 C 0.105 3.895 14 C -0.148 4.148 15 C -0.104 4.104 16 C -0.160 4.160 17 C 0.041 3.959 18 C -0.166 4.166 19 C 0.025 3.975 20 N -0.480 5.480 21 C -0.033 4.033 22 S 0.221 5.779 23 C -0.114 4.114 24 H 0.280 0.720 25 H 0.146 0.854 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.167 0.833 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.436 -2.759 3.308 8.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.131 4.131 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.172 1.172 7 C -0.454 4.454 8 H 0.111 0.889 9 C 0.029 3.971 10 C -0.287 4.287 11 N -0.185 5.185 12 H 0.232 0.768 13 C -0.006 4.006 14 C -0.171 4.171 15 C -0.123 4.123 16 C -0.183 4.183 17 C 0.038 3.962 18 C -0.289 4.289 19 C -0.129 4.129 20 N -0.194 5.194 21 C -0.327 4.327 22 S 0.480 5.520 23 C -0.122 4.122 24 H 0.090 0.910 25 H 0.163 0.837 26 H 0.125 0.875 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.184 0.816 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.684 -2.014 3.763 7.931 hybrid contribution 0.880 0.598 -1.006 1.464 sum 7.565 -1.416 2.757 8.175 Atomic orbital electron populations 1.69737 1.07357 1.29297 1.39354 1.25825 0.94736 1.00477 0.92066 0.86492 0.80491 0.80845 0.78845 1.20279 1.22312 1.17207 1.18724 0.89220 0.95428 1.42040 0.88859 1.18248 0.92693 0.90720 0.95467 1.21737 0.82827 1.06383 1.17704 1.40928 1.08140 1.18664 1.50767 0.76774 1.18081 0.94878 0.88518 0.99122 1.19914 0.95442 0.96474 1.05262 1.20393 0.96659 0.95875 0.99384 1.20674 0.91498 1.00474 1.05619 1.17176 0.88969 0.93176 0.96833 1.24373 1.00353 0.97823 1.06325 1.21823 0.91112 0.96859 1.03114 1.66105 1.12868 1.29848 1.10574 1.28238 1.05870 0.93875 1.04702 1.84278 1.08921 1.18035 1.40773 1.19284 0.93310 0.96548 1.03031 0.91005 0.83716 0.87525 0.86704 0.86814 0.81580 0.79555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.01 13.94 55.53 0.77 -21.23 16 2 C 0.08 2.16 5.51 -17.34 -0.10 2.06 16 3 Si 0.90 20.34 24.56 -169.99 -4.17 16.16 16 4 H -0.28 -6.00 6.59 56.52 0.37 -5.62 16 5 H -0.30 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.25 -5.65 6.63 56.52 0.37 -5.28 16 7 C -0.42 -11.07 8.04 -38.02 -0.31 -11.38 16 8 H 0.09 2.59 5.75 -52.49 -0.30 2.29 16 9 C 0.04 0.87 5.59 -104.84 -0.59 0.28 16 10 C -0.16 -3.74 9.22 -15.60 -0.14 -3.88 16 11 N -0.58 -11.41 5.99 -9.80 -0.06 -11.47 16 12 H 0.40 6.16 8.96 -40.82 -0.37 5.79 16 13 C 0.11 2.13 7.23 -83.92 -0.61 1.53 16 14 C -0.15 -2.51 10.06 -39.30 -0.40 -2.90 16 15 C -0.10 -1.64 9.99 -39.64 -0.40 -2.04 16 16 C -0.16 -2.78 9.76 -39.14 -0.38 -3.16 16 17 C 0.04 0.85 5.79 -104.81 -0.61 0.25 16 18 C -0.17 -3.38 4.92 -36.83 -0.18 -3.56 16 19 C 0.03 0.49 11.28 -18.82 -0.21 0.28 16 20 N -0.48 -9.38 10.52 -15.45 -0.16 -9.54 16 21 C -0.03 -0.60 12.21 51.63 0.63 0.03 16 22 S 0.22 4.32 20.18 -107.50 -2.17 2.15 16 23 C -0.11 -2.58 6.19 -104.60 -0.65 -3.23 16 24 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 25 H 0.15 3.23 4.33 -52.49 -0.23 3.00 16 26 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 28 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.17 2.84 8.06 -52.48 -0.42 2.41 16 30 H 0.19 2.73 8.06 -52.49 -0.42 2.31 16 LS Contribution 268.93 15.07 4.05 4.05 Total: -1.00 -29.10 268.93 -7.87 -36.97 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -2.20 Total: 8.63 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -3.93 Total: -25.72 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.55 Total: -42.24 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.17 Total: 16.16 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -2.17 Total: 2.15 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.10 -7.87 -36.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241500628.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.468 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds