Wall clock time and date at job start Mon Mar 30 2020 00:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31104 * 1 3 3 Si 1.86802 * 119.99669 * 2 1 4 4 H 1.48505 * 109.46887 * 266.50539 * 3 2 1 5 5 H 1.48496 * 109.47176 * 26.51013 * 3 2 1 6 6 H 1.48503 * 109.46713 * 146.51125 * 3 2 1 7 7 C 1.39635 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00423 * 350.00645 * 7 2 1 9 9 C 1.40988 * 119.99499 * 170.00080 * 7 2 1 10 10 C 1.39019 * 126.93207 * 335.32766 * 9 7 2 11 11 N 1.35600 * 109.22674 * 179.77080 * 10 9 7 12 12 H 0.97002 * 124.70695 * 180.28555 * 11 10 9 13 13 C 1.38176 * 110.58517 * 0.42622 * 11 10 9 14 14 C 1.39176 * 132.72384 * 179.87258 * 13 11 10 15 15 C 1.38051 * 120.28806 * 179.70262 * 14 13 11 16 16 C 1.38277 * 120.80203 * 0.02562 * 15 14 13 17 17 C 1.39390 * 120.07712 * 359.95312 * 16 15 14 18 18 C 1.47625 * 120.30365 * 180.02562 * 17 16 15 19 19 C 1.35202 * 126.10994 * 303.53332 * 18 17 16 20 20 N 1.31404 * 114.20156 * 179.97438 * 19 18 17 21 21 C 1.29143 * 117.29700 * 0.02562 * 20 19 18 22 22 S 1.70947 * 110.39287 * 359.74621 * 21 20 19 23 23 C 1.40205 * 107.88572 * 359.58019 * 13 11 10 24 24 H 0.96999 * 120.00255 * 0.02562 * 1 2 3 25 25 H 1.07999 * 125.39116 * 0.06559 * 10 9 7 26 26 H 1.07998 * 119.85832 * 359.68375 * 14 13 11 27 27 H 1.08007 * 119.59591 * 179.97438 * 15 14 13 28 28 H 1.08008 * 119.96333 * 179.97438 * 16 15 14 29 29 H 1.08006 * 122.89741 * 359.96444 * 19 18 17 30 30 H 1.07996 * 124.80305 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2450 1.6178 0.0000 4 1 2.5663 2.0038 -1.3975 5 1 1.4074 2.6729 0.6249 6 1 3.5037 1.4626 0.7726 7 6 2.0092 -1.2093 0.0005 8 1 1.4815 -2.1375 0.1633 9 6 3.4030 -1.2186 -0.2115 10 6 4.1524 -0.2586 -0.8820 11 7 5.4585 -0.6229 -0.8696 12 1 6.1783 -0.1114 -1.2711 13 6 5.6213 -1.8253 -0.2086 14 6 6.7390 -2.6073 0.0674 15 6 6.6060 -3.7889 0.7688 16 6 5.3663 -4.2162 1.2077 17 6 4.2307 -3.4517 0.9451 18 6 2.9048 -3.9028 1.4118 19 6 2.3196 -5.0874 1.1249 20 7 1.1326 -5.2469 1.6656 21 6 0.6761 -4.2787 2.3881 22 16 1.8049 -2.9963 2.4478 23 6 4.3595 -2.2484 0.2326 24 1 -0.4850 0.8400 -0.0004 25 1 3.7575 0.6380 -1.3364 26 1 7.7145 -2.2886 -0.2688 27 1 7.4808 -4.3873 0.9764 28 1 5.2778 -5.1431 1.7549 29 1 2.7874 -5.8377 0.5046 30 1 -0.2813 -4.2810 2.8879 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241500628.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:23 Heat of formation + Delta-G solvation = 82.259317 kcal Electronic energy + Delta-G solvation = -17679.962307 eV Core-core repulsion = 14952.483871 eV Total energy + Delta-G solvation = -2727.478436 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.052 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.65427 -40.24385 -37.56032 -35.42251 -33.55952 -31.56196 -29.98704 -29.24975 -26.74542 -25.82769 -23.47679 -22.70766 -21.38553 -20.70037 -19.52077 -18.26981 -18.06937 -17.13976 -16.53638 -16.06830 -15.81942 -15.31458 -15.01058 -14.90332 -14.68893 -14.54105 -14.23889 -13.44328 -13.21072 -12.85795 -12.62273 -12.51851 -12.28671 -12.00715 -11.79215 -11.53489 -11.07022 -10.58308 -10.29309 -9.88694 -9.54939 -8.89554 -8.60287 -8.40452 -6.04746 -0.33439 0.36464 0.75575 0.93169 1.15506 1.23713 1.36943 1.48900 1.94530 2.02663 2.22173 2.68539 3.03839 3.44360 3.58169 3.91476 4.18155 4.31087 4.45307 4.56306 4.57823 4.68607 4.89689 4.94391 5.13692 5.25053 5.35449 5.46435 5.72339 5.83262 5.91371 6.06875 6.45197 6.52653 6.84242 6.87048 7.06730 7.18422 8.49004 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.011818 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.922030 B = 2368.628573 C = 4067.541980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.043 3.957 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.254 1.254 7 C -0.435 4.435 8 H 0.064 0.936 9 C -0.004 4.004 10 C -0.152 4.152 11 N -0.577 5.577 12 H 0.419 0.581 13 C 0.094 3.906 14 C -0.138 4.138 15 C -0.093 4.093 16 C -0.147 4.147 17 C 0.013 3.987 18 C -0.177 4.177 19 C 0.019 3.981 20 N -0.494 5.494 21 C -0.023 4.023 22 S 0.187 5.813 23 C -0.151 4.151 24 H 0.282 0.718 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.163 0.837 28 H 0.138 0.862 29 H 0.186 0.814 30 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.692 -3.453 3.313 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.167 4.167 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.178 1.178 7 C -0.469 4.469 8 H 0.082 0.918 9 C -0.011 4.011 10 C -0.275 4.275 11 N -0.181 5.181 12 H 0.256 0.744 13 C -0.017 4.017 14 C -0.160 4.160 15 C -0.112 4.112 16 C -0.169 4.169 17 C 0.010 3.990 18 C -0.299 4.299 19 C -0.135 4.135 20 N -0.209 5.209 21 C -0.317 4.317 22 S 0.446 5.554 23 C -0.159 4.159 24 H 0.092 0.908 25 H 0.165 0.835 26 H 0.164 0.836 27 H 0.180 0.820 28 H 0.156 0.844 29 H 0.203 0.797 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 9.992 -2.717 3.753 11.014 hybrid contribution 0.070 0.619 -0.994 1.173 sum 10.061 -2.097 2.760 10.642 Atomic orbital electron populations 1.69799 1.08436 1.29938 1.42428 1.26418 0.95280 1.02906 0.92073 0.85704 0.79043 0.77790 0.79217 1.18930 1.21935 1.17803 1.18631 0.90217 0.94592 1.43467 0.91827 1.18449 0.92656 0.92885 0.97121 1.21815 0.84217 1.05500 1.15972 1.40840 1.07560 1.18921 1.50804 0.74352 1.18475 0.95206 0.88858 0.99151 1.20415 0.95952 0.95789 1.03815 1.20966 0.97452 0.95533 0.97234 1.21099 0.91150 1.00534 1.04144 1.17450 0.90043 0.93587 0.97882 1.24507 1.00784 0.97923 1.06708 1.22145 0.91067 0.97173 1.03085 1.66154 1.13156 1.30333 1.11229 1.28743 1.06419 0.92650 1.03909 1.84339 1.10144 1.19422 1.41454 1.19530 0.93988 0.97475 1.04882 0.90786 0.83479 0.83597 0.81994 0.84423 0.79739 0.76501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.60 13.94 21.78 0.30 -48.30 16 2 C 0.04 2.29 5.51 85.14 0.47 2.75 16 3 Si 0.96 42.63 24.56 68.60 1.68 44.31 16 4 H -0.26 -11.01 6.59 99.48 0.66 -10.36 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.25 -11.38 6.63 99.48 0.66 -10.72 16 7 C -0.44 -23.84 8.04 23.28 0.19 -23.65 16 8 H 0.06 3.75 5.75 -2.91 -0.02 3.74 16 9 C 0.00 -0.22 5.59 -20.00 -0.11 -0.34 16 10 C -0.15 -6.78 9.22 84.30 0.78 -6.00 16 11 N -0.58 -21.28 5.99 -184.93 -1.11 -22.39 16 12 H 0.42 11.65 8.96 -92.71 -0.83 10.82 16 13 C 0.09 3.55 7.23 38.85 0.28 3.83 16 14 C -0.14 -3.98 10.06 22.45 0.23 -3.75 16 15 C -0.09 -2.44 9.99 22.23 0.22 -2.22 16 16 C -0.15 -4.61 9.76 22.56 0.22 -4.39 16 17 C 0.01 0.54 5.79 -19.99 -0.12 0.42 16 18 C -0.18 -7.25 4.92 24.05 0.12 -7.13 16 19 C 0.02 0.74 11.28 84.06 0.95 1.69 16 20 N -0.49 -19.31 10.52 -202.79 -2.13 -21.44 16 21 C -0.02 -0.85 12.21 130.64 1.60 0.75 16 22 S 0.19 7.58 20.18 -56.49 -1.14 6.44 16 23 C -0.15 -6.79 6.19 -19.85 -0.12 -6.91 16 24 H 0.28 14.44 8.30 -92.71 -0.77 13.67 16 25 H 0.15 6.42 4.33 -2.91 -0.01 6.41 16 26 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 27 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 29 H 0.19 6.15 8.06 -2.91 -0.02 6.12 16 30 H 0.22 6.27 8.06 -2.91 -0.02 6.24 16 Total: -1.00 -65.47 268.93 2.58 -62.89 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.27 Total: 23.43 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 4.69 Total: -44.95 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -2.94 Total: -92.13 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.68 Total: 44.31 kcal Atomic # 16 Polarization: 7.58 SS G_CDS: -1.14 Total: 6.44 kcal Total: -65.47 2.58 -62.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241500628.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.150 kcal (2) G-P(sol) polarization free energy of solvation -65.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds