Wall clock time and date at job start Mon Mar 30 2020 00:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31103 * 1 3 3 Si 1.86795 * 120.00013 * 2 1 4 4 H 1.48502 * 109.47542 * 274.32705 * 3 2 1 5 5 H 1.48499 * 109.47423 * 34.32966 * 3 2 1 6 6 H 1.48500 * 109.47147 * 154.32562 * 3 2 1 7 7 C 1.39659 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99932 * 4.00826 * 7 2 1 9 9 C 1.40967 * 119.99682 * 184.01604 * 7 2 1 10 10 C 1.38993 * 126.93147 * 312.58180 * 9 7 2 11 11 N 1.35608 * 109.23354 * 180.02562 * 10 9 7 12 12 H 0.97002 * 124.69978 * 180.02562 * 11 10 9 13 13 C 1.38164 * 110.59156 * 359.97438 * 11 10 9 14 14 C 1.39174 * 132.72994 * 179.97438 * 13 11 10 15 15 C 1.38008 * 120.24911 * 179.97438 * 14 13 11 16 16 C 1.38358 * 120.77050 * 0.02562 * 15 14 13 17 17 C 1.39178 * 120.10011 * 359.97438 * 16 15 14 18 18 C 1.48134 * 120.28071 * 180.02562 * 17 16 15 19 19 C 1.34980 * 122.98759 * 353.22510 * 18 17 16 20 20 S 1.76172 * 107.86508 * 179.97438 * 19 18 17 21 21 C 1.70904 * 90.45233 * 0.02562 * 20 19 18 22 22 N 1.28776 * 110.52575 * 359.76691 * 21 20 19 23 23 C 1.40216 * 107.89158 * 0.02562 * 13 11 10 24 24 H 0.96999 * 119.99927 * 359.97438 * 1 2 3 25 25 H 1.08004 * 125.38194 * 0.05611 * 10 9 7 26 26 H 1.07999 * 119.87519 * 0.02562 * 14 13 11 27 27 H 1.08004 * 119.61795 * 179.74551 * 15 14 13 28 28 H 1.07998 * 119.94633 * 179.97438 * 16 15 14 29 29 H 1.07998 * 126.06373 * 359.97020 * 19 18 17 30 30 H 1.08003 * 124.73832 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2450 1.6177 0.0000 4 1 2.4011 2.0993 -1.3961 5 1 1.4913 2.6245 0.7896 6 1 3.5853 1.4155 0.6066 7 6 2.0093 -1.2095 -0.0005 8 1 1.4712 -2.1436 -0.0663 9 6 3.4164 -1.2110 0.0850 10 6 4.2988 -0.4316 -0.6538 11 7 5.5702 -0.7229 -0.2829 12 1 6.3633 -0.3079 -0.6567 13 6 5.5792 -1.6920 0.7018 14 6 6.6068 -2.3199 1.3995 15 6 6.3176 -3.2747 2.3531 16 6 5.0078 -3.6235 2.6310 17 6 3.9621 -3.0103 1.9472 18 6 2.5583 -3.3803 2.2420 19 6 2.2234 -4.3965 3.0648 20 16 0.4650 -4.4828 3.1291 21 6 0.3472 -3.1591 2.0545 22 7 1.5192 -2.7399 1.7244 23 6 4.2489 -2.0400 0.9759 24 1 -0.4850 0.8400 0.0004 25 1 4.0164 0.2921 -1.4042 26 1 7.6344 -2.0584 1.1945 27 1 7.1231 -3.7585 2.8855 28 1 4.7967 -4.3727 3.3796 29 1 2.9114 -5.0422 3.5904 30 1 -0.5806 -2.7316 1.7041 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241892287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:25 Heat of formation + Delta-G solvation = 125.397291 kcal Electronic energy + Delta-G solvation = -17860.903714 eV Core-core repulsion = 15135.295881 eV Total energy + Delta-G solvation = -2725.607833 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.052 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.15680 -38.70810 -35.94673 -33.10460 -31.56138 -30.02242 -28.37558 -27.69380 -24.99546 -24.18901 -22.13749 -20.75198 -19.68329 -18.95597 -17.80781 -16.32793 -16.15246 -15.35304 -15.27317 -14.24211 -14.08316 -13.87786 -13.25005 -13.20587 -13.03964 -12.86332 -12.40342 -11.66376 -11.37200 -11.27511 -11.07504 -10.84183 -10.68850 -10.39066 -9.96493 -9.74741 -9.17562 -8.91737 -8.71164 -8.08488 -7.76563 -7.31112 -6.49870 -6.15602 -3.80379 1.13824 2.03071 2.07771 2.39627 2.40897 3.22757 3.36142 3.49347 3.76131 3.88441 4.19572 4.36937 4.79635 4.97810 5.38291 5.44973 5.62358 5.73193 5.84632 5.94072 6.06707 6.18277 6.43588 6.51901 6.62945 6.82242 6.99902 7.23478 7.32288 7.42797 7.71472 7.89726 8.24107 8.56313 8.67531 9.00687 9.05121 9.35530 10.76495 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.011458 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.198791 B = 2443.105236 C = 4254.350091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.080 3.920 3 Si 0.874 3.126 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.246 1.246 7 C -0.381 4.381 8 H 0.110 0.890 9 C 0.034 3.966 10 C -0.124 4.124 11 N -0.588 5.588 12 H 0.397 0.603 13 C 0.095 3.905 14 C -0.147 4.147 15 C -0.108 4.108 16 C -0.165 4.165 17 C 0.035 3.965 18 C 0.114 3.886 19 C -0.261 4.261 20 S 0.029 5.971 21 C 0.045 3.955 22 N -0.370 5.370 23 C -0.095 4.095 24 H 0.269 0.731 25 H 0.144 0.856 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.169 0.831 30 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.629 -5.774 4.526 9.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.169 1.169 7 C -0.416 4.416 8 H 0.127 0.873 9 C 0.027 3.973 10 C -0.247 4.247 11 N -0.190 5.190 12 H 0.231 0.769 13 C -0.016 4.016 14 C -0.169 4.169 15 C -0.128 4.128 16 C -0.186 4.186 17 C 0.032 3.968 18 C -0.017 4.017 19 C -0.400 4.400 20 S 0.281 5.719 21 C -0.256 4.256 22 N -0.079 5.079 23 C -0.103 4.103 24 H 0.079 0.921 25 H 0.162 0.838 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.186 0.814 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.659 -5.720 4.561 8.674 hybrid contribution 1.518 1.498 -0.351 2.161 sum 6.177 -4.222 4.210 8.585 Atomic orbital electron populations 1.69666 1.06891 1.27819 1.44805 1.25616 0.94657 0.99032 0.93571 0.86857 0.81859 0.82662 0.78429 1.20662 1.22385 1.16925 1.18714 0.87722 0.94953 1.40180 0.87318 1.18364 0.93500 0.93199 0.92210 1.22038 0.82152 1.12687 1.07818 1.41037 1.07549 1.35386 1.35011 0.76894 1.18153 0.95093 0.94240 0.94121 1.19898 0.96158 1.00896 0.99992 1.20348 0.95734 0.98298 0.98388 1.20578 0.91902 1.03140 1.03025 1.17437 0.88366 0.95337 0.95668 1.19427 0.94058 0.92726 0.95445 1.26896 0.96826 1.06540 1.09690 1.83715 1.03285 1.36988 1.47899 1.29120 1.01167 0.96418 0.98936 1.67711 0.96996 1.24673 1.18497 1.19575 0.92700 0.99720 0.98260 0.92098 0.83849 0.87633 0.86796 0.86993 0.81405 0.78615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.55 13.94 55.54 0.77 -22.77 16 2 C 0.08 2.16 5.51 -17.33 -0.10 2.06 16 3 Si 0.87 21.09 25.42 -169.99 -4.32 16.77 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.25 -6.02 5.97 56.52 0.34 -5.68 16 7 C -0.38 -10.32 7.17 -38.02 -0.27 -10.59 16 8 H 0.11 3.11 5.90 -52.49 -0.31 2.80 16 9 C 0.03 0.86 5.14 -104.83 -0.54 0.32 16 10 C -0.12 -2.85 8.84 -15.60 -0.14 -2.99 16 11 N -0.59 -11.69 5.99 -9.81 -0.06 -11.75 16 12 H 0.40 6.24 8.96 -40.82 -0.37 5.87 16 13 C 0.09 1.97 7.23 -83.92 -0.61 1.36 16 14 C -0.15 -2.57 10.06 -39.32 -0.40 -2.97 16 15 C -0.11 -1.77 10.00 -39.62 -0.40 -2.17 16 16 C -0.16 -2.93 9.49 -39.19 -0.37 -3.30 16 17 C 0.04 0.76 5.89 -104.73 -0.62 0.14 16 18 C 0.11 2.40 6.63 -84.64 -0.56 1.84 16 19 C -0.26 -4.48 10.63 29.57 0.31 -4.16 16 20 S 0.03 0.45 23.21 -107.50 -2.49 -2.04 16 21 C 0.04 0.87 12.12 51.48 0.62 1.50 16 22 N -0.37 -8.46 5.03 -12.30 -0.06 -8.52 16 23 C -0.10 -2.25 6.17 -104.64 -0.65 -2.89 16 24 H 0.27 6.98 8.30 -40.82 -0.34 6.64 16 25 H 0.14 3.15 6.30 -52.48 -0.33 2.82 16 26 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 28 H 0.11 1.66 6.71 -52.49 -0.35 1.31 16 29 H 0.17 2.37 6.96 -52.49 -0.37 2.00 16 30 H 0.20 3.66 8.06 -52.48 -0.42 3.24 16 LS Contribution 265.98 15.07 4.01 4.01 Total: -1.00 -29.96 265.98 -8.05 -38.00 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -2.19 Total: 8.15 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -3.70 Total: -21.84 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.65 Total: -43.05 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.32 Total: 16.77 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.49 Total: -2.04 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.96 -8.05 -38.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241892287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.400 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds