Wall clock time and date at job start Mon Mar 30 2020 00:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31103 * 1 3 3 Si 1.86795 * 120.00013 * 2 1 4 4 H 1.48502 * 109.47542 * 274.32705 * 3 2 1 5 5 H 1.48499 * 109.47423 * 34.32966 * 3 2 1 6 6 H 1.48500 * 109.47147 * 154.32562 * 3 2 1 7 7 C 1.39659 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99932 * 4.00826 * 7 2 1 9 9 C 1.40967 * 119.99682 * 184.01604 * 7 2 1 10 10 C 1.38993 * 126.93147 * 312.58180 * 9 7 2 11 11 N 1.35608 * 109.23354 * 180.02562 * 10 9 7 12 12 H 0.97002 * 124.69978 * 180.02562 * 11 10 9 13 13 C 1.38164 * 110.59156 * 359.97438 * 11 10 9 14 14 C 1.39174 * 132.72994 * 179.97438 * 13 11 10 15 15 C 1.38008 * 120.24911 * 179.97438 * 14 13 11 16 16 C 1.38358 * 120.77050 * 0.02562 * 15 14 13 17 17 C 1.39178 * 120.10011 * 359.97438 * 16 15 14 18 18 C 1.48134 * 120.28071 * 180.02562 * 17 16 15 19 19 C 1.34980 * 122.98759 * 353.22510 * 18 17 16 20 20 S 1.76172 * 107.86508 * 179.97438 * 19 18 17 21 21 C 1.70904 * 90.45233 * 0.02562 * 20 19 18 22 22 N 1.28776 * 110.52575 * 359.76691 * 21 20 19 23 23 C 1.40216 * 107.89158 * 0.02562 * 13 11 10 24 24 H 0.96999 * 119.99927 * 359.97438 * 1 2 3 25 25 H 1.08004 * 125.38194 * 0.05611 * 10 9 7 26 26 H 1.07999 * 119.87519 * 0.02562 * 14 13 11 27 27 H 1.08004 * 119.61795 * 179.74551 * 15 14 13 28 28 H 1.07998 * 119.94633 * 179.97438 * 16 15 14 29 29 H 1.07998 * 126.06373 * 359.97020 * 19 18 17 30 30 H 1.08003 * 124.73832 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2450 1.6177 0.0000 4 1 2.4011 2.0993 -1.3961 5 1 1.4913 2.6245 0.7896 6 1 3.5853 1.4155 0.6066 7 6 2.0093 -1.2095 -0.0005 8 1 1.4712 -2.1436 -0.0663 9 6 3.4164 -1.2110 0.0850 10 6 4.2988 -0.4316 -0.6538 11 7 5.5702 -0.7229 -0.2829 12 1 6.3633 -0.3079 -0.6567 13 6 5.5792 -1.6920 0.7018 14 6 6.6068 -2.3199 1.3995 15 6 6.3176 -3.2747 2.3531 16 6 5.0078 -3.6235 2.6310 17 6 3.9621 -3.0103 1.9472 18 6 2.5583 -3.3803 2.2420 19 6 2.2234 -4.3965 3.0648 20 16 0.4650 -4.4828 3.1291 21 6 0.3472 -3.1591 2.0545 22 7 1.5192 -2.7399 1.7244 23 6 4.2489 -2.0400 0.9759 24 1 -0.4850 0.8400 0.0004 25 1 4.0164 0.2921 -1.4042 26 1 7.6344 -2.0584 1.1945 27 1 7.1231 -3.7585 2.8855 28 1 4.7967 -4.3727 3.3796 29 1 2.9114 -5.0422 3.5904 30 1 -0.5806 -2.7316 1.7041 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241892287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:25 Heat of formation + Delta-G solvation = 106.715921 kcal Electronic energy + Delta-G solvation = -17861.713799 eV Core-core repulsion = 15135.295881 eV Total energy + Delta-G solvation = -2726.417918 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.052 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.71582 -40.21248 -37.43153 -34.97555 -33.08747 -31.67393 -29.93624 -29.17520 -26.63017 -25.82059 -23.64378 -22.25648 -21.37211 -20.54844 -19.26750 -18.10047 -17.68397 -16.88745 -16.73934 -16.01332 -15.59631 -15.44612 -14.81093 -14.71269 -14.62233 -14.52035 -13.88685 -13.24150 -13.14307 -12.89151 -12.65812 -12.46032 -12.18460 -12.04900 -11.65357 -11.54053 -10.86876 -10.53798 -10.12764 -9.68946 -9.28741 -8.84283 -8.32009 -7.91738 -5.76206 -0.28058 0.54377 0.73299 0.94444 0.97429 1.29606 1.39867 1.53728 2.03836 2.32728 2.42062 2.68773 3.20470 3.49566 3.61745 4.09617 4.28990 4.36182 4.48695 4.56337 4.62368 4.70515 4.99502 5.03919 5.13332 5.31320 5.51577 5.66109 5.78252 5.91442 6.06580 6.18184 6.57233 6.88556 7.11260 7.21619 7.28234 7.39337 8.85001 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.011458 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.198791 B = 2443.105236 C = 4254.350091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.033 3.967 3 Si 0.926 3.074 4 H -0.268 1.268 5 H -0.304 1.304 6 H -0.252 1.252 7 C -0.382 4.382 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.108 4.108 11 N -0.581 5.581 12 H 0.418 0.582 13 C 0.081 3.919 14 C -0.141 4.141 15 C -0.098 4.098 16 C -0.152 4.152 17 C 0.004 3.996 18 C 0.072 3.928 19 C -0.247 4.247 20 S 0.127 5.873 21 C 0.007 3.993 22 N -0.419 5.419 23 C -0.140 4.140 24 H 0.266 0.734 25 H 0.149 0.851 26 H 0.144 0.856 27 H 0.163 0.837 28 H 0.147 0.853 29 H 0.206 0.794 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.991 -7.593 6.451 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.170 4.170 3 Si 0.754 3.246 4 H -0.194 1.194 5 H -0.233 1.233 6 H -0.175 1.175 7 C -0.417 4.417 8 H 0.097 0.903 9 C -0.019 4.019 10 C -0.232 4.232 11 N -0.185 5.185 12 H 0.256 0.744 13 C -0.028 4.028 14 C -0.163 4.163 15 C -0.116 4.116 16 C -0.173 4.173 17 C 0.001 3.999 18 C -0.058 4.058 19 C -0.386 4.386 20 S 0.380 5.620 21 C -0.293 4.293 22 N -0.130 5.130 23 C -0.147 4.147 24 H 0.075 0.925 25 H 0.167 0.833 26 H 0.162 0.838 27 H 0.181 0.819 28 H 0.164 0.836 29 H 0.223 0.777 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 8.066 -7.548 6.480 12.807 hybrid contribution 0.658 1.768 -0.799 2.049 sum 8.724 -5.780 5.680 11.907 Atomic orbital electron populations 1.69758 1.07763 1.27820 1.48522 1.26124 0.95233 1.01218 0.94440 0.86053 0.80181 0.79783 0.78627 1.19372 1.23269 1.17546 1.18587 0.88747 0.93951 1.40463 0.90344 1.18566 0.93372 0.95761 0.94169 1.22092 0.83411 1.10930 1.06804 1.40940 1.07208 1.35449 1.34932 0.74435 1.18559 0.95147 0.94598 0.94545 1.20402 0.97063 0.99886 0.98933 1.20968 0.96397 0.97003 0.97275 1.21068 0.91650 1.02452 1.02166 1.17883 0.89740 0.96057 0.96264 1.19607 0.93926 0.94686 0.97626 1.27413 0.98709 1.05009 1.07509 1.83234 1.01401 1.32910 1.44437 1.28886 1.00353 0.98953 1.01113 1.67574 0.98289 1.26922 1.20166 1.19823 0.93692 1.01410 0.99774 0.92459 0.83348 0.83835 0.81919 0.83579 0.77728 0.79781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.07 13.94 21.79 0.30 -52.77 16 2 C 0.03 1.88 5.51 85.14 0.47 2.35 16 3 Si 0.93 45.55 25.42 68.60 1.74 47.29 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 6 H -0.25 -12.38 5.97 99.48 0.59 -11.79 16 7 C -0.38 -22.01 7.17 23.28 0.17 -21.84 16 8 H 0.08 4.90 5.90 -2.91 -0.02 4.88 16 9 C -0.01 -0.62 5.14 -20.00 -0.10 -0.72 16 10 C -0.11 -4.99 8.84 84.29 0.75 -4.24 16 11 N -0.58 -22.25 5.99 -184.94 -1.11 -23.36 16 12 H 0.42 12.12 8.96 -92.71 -0.83 11.29 16 13 C 0.08 3.23 7.23 38.85 0.28 3.51 16 14 C -0.14 -4.29 10.06 22.44 0.23 -4.06 16 15 C -0.10 -2.64 10.00 22.24 0.22 -2.41 16 16 C -0.15 -4.80 9.49 22.52 0.21 -4.58 16 17 C 0.00 0.16 5.89 -19.93 -0.12 0.04 16 18 C 0.07 3.04 6.63 40.91 0.27 3.31 16 19 C -0.25 -7.89 10.63 67.07 0.71 -7.18 16 20 S 0.13 3.78 23.21 -56.49 -1.31 2.47 16 21 C 0.01 0.28 12.12 130.69 1.58 1.86 16 22 N -0.42 -20.16 5.03 -192.83 -0.97 -21.13 16 23 C -0.14 -6.64 6.17 -19.88 -0.12 -6.76 16 24 H 0.27 14.81 8.30 -92.71 -0.77 14.04 16 25 H 0.15 6.55 6.30 -2.91 -0.02 6.53 16 26 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 27 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.15 3.49 6.71 -2.91 -0.02 3.47 16 29 H 0.21 4.76 6.96 -2.91 -0.02 4.74 16 30 H 0.19 7.62 8.06 -2.91 -0.02 7.60 16 Total: -1.00 -70.98 265.98 3.47 -67.51 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.26 Total: 20.73 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 4.55 Total: -40.75 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -1.77 Total: -97.26 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.74 Total: 47.29 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.31 Total: 2.47 kcal Total: -70.98 3.47 -67.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241892287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.223 kcal (2) G-P(sol) polarization free energy of solvation -70.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds